BAC Information

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BAC

Clone NameB6Ng01-029E24
Chromosome14 (Build37)
Map Location 118,578,671 - 118,743,010
singlet/doubletdoublet
Overlap geneLOC100043824, LOC100043539, Sox21, LOC100043825, EG668814
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180
Downstream geneLOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029E24.bB6Ng01-029E24.g
ACCDH859550DH859551
length4291,083
definitionDH859550|Mus musculus domesticus DNA, BAC clone: B6Ng01-029E24, 5' end.DH859551|Mus musculus domesticus DNA, BAC clone: B6Ng01-029E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,742,576 - 118,743,010)(118,578,671 - 118,579,762)
sequence
aggtgacatcgacatcatagattagtggttctgagacagtggacaaaggt
agagactatatagcctccaagctttctgccataatgataatagactaact
ttctgaaactgtaagcaaccctagttaaatgctttcttccttaagttgcc
ttggccatgatgcctcttcattcatacacacacacacacacacacacaca
cacacacacacacacacacacacatacatgtatgtatgtatgtatgtatg
tatgtatgtatgtatgtatgtatgtatgtgtgtccgggagtctgttaatt
cctgagcaggaaagaagtgatggaagagacctgtgtgcatttattctcca
atctctttaacaaatgtgtctccagacccttacacatgcccgctgccacc
accttagacaatgcagtcatccccacttg
gaattccaacttactcccacacaaagtaaacttttacatctcttgcctag
cctgtgagctttatagatctttgaaaagattagtgtttaagacttactca
gaagccagttttttttaaaaagtccccccaggggcaaggtagagtgaata
aagttgggcttatttatttatttatttatttatttatttttgttagtttt
aacatggaaactgtcttcttcttgggtacaccatgcatgttgtaattcac
attcgtcatcagattcgtgcactgcgatcaattttattttattctctaaa
ggtgtggggctttgtgggcataaatgactttcaatggttgtgaaagtttc
tcttaccaagcttacagtcctgtgatacaggtttgaactctgtctctgac
agtttctcagaagtgtgtattagagagtaggtcatgaggctagcctgaga
actggagacggaccacattcctgccagaaagaattcaggttttaagtgca
gagcaaacattacagattatgacttccatttagattttgttactttctga
attataaacgcccttcccaagagcgacatccctctgcctgctcttcagct
tctgagaagtcatctcccaaatctgccattttttcatgttatccagtaag
cggcttcacgggacaaaaaaagtcactgcttgctctcaacctgatgtcgc
ccccacccccaccccaccccaccccaccccagggttctgctttaaagcgg
gcgggcgggctttatttcctgccctttgtcttctcaaagctcctccttga
ctctgtatcacactgctgctttggtgtttctgattcttgatcgcgctcca
ccaccggctcaagcttccactgagtttcaacagctgcgacatgtctaaac
tgcattatcttgcaactgttggctccggtgagaacgagaaggagccaggt
gactaaaacaaaacatttcaccgggttctatgggatacgcctgcatcagg
aagcgcgccgctgggcgggctgacttcttcagctccgatgctcttctgcg
tgttggtcctttgaacattcgtatgagtgcccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118742576_118743010
seq2: B6Ng01-029E24.b_46_480 (reverse)

seq1  CACGTGGGGATGACTGCATTGTCTAAGGTGGTGGCAGCGGGCATGTGTAA  50
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGGGATGACTGCATTGTCTAAGGTGGTGGCAGCGGGCATGTGTAA  50

seq1  GGGTCTGGAGACACATTTGTTAAAGAGATTGGAGAATAAATGCACACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGGAGACACATTTGTTAAAGAGATTGGAGAATAAATGCACACAGG  100

seq1  TCTCTTCCATCACTTCTTTCCTGCTCAGGAATTAACAGACTCCAGGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  TCTCTTCCATCACTTCTTTCCTGCTCAGGAATTAACAGACTCCCGGACAC  150

seq1  ACATACATACATACATACATACATACATACATACATACATACATACATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATACATACATACATACATACATACATACATACATACATACATAC  200

seq1  ATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  250

seq1  GTGTATGAATGAAGAGGCATCATGGCCAAGGCAACTTAAGGAAGAAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGAATGAAGAGGCATCATGGCCAAGGCAACTTAAGGAAGAAAGCA  300

seq1  TTTAACTAGGGTTGCTTACAGTTTCAGAAAGTTAGTCTATTATCATTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTAGGGTTGCTTACAGTTTCAGAAAGTTAGTCTATTATCATTATG  350

seq1  GCAGAAAGCTTGGAGGCTATATAGTCTCTACCTTTGTCCACTGTCTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGCTTGGAGGCTATATAGTCTCTACCTTTGTCCACTGTCTCAGA  400

seq1  ACCACTAATCTATGATGTCGATGTCACCTGAATTC  435
      |||||||||||||||||||||||||||||||||||
seq2  ACCACTAATCTATGATGTCGATGTCACCTGAATTC  435

seq1: chr14_118578671_118579762
seq2: B6Ng01-029E24.g_65_1147

seq1  GAATTCCAACTTACTCCCACACAAAGTAAACTTTTACATCTCTTGCCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTTACTCCCACACAAAGTAAACTTTTACATCTCTTGCCTAG  50

seq1  CCTGTGAGCTTTATAGATCTTTGAAAAGATTAGTGTTTAAGACTTACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGCTTTATAGATCTTTGAAAAGATTAGTGTTTAAGACTTACTCA  100

seq1  GAAGCCAGTTTTTTTTAAAAAGTCCCCCCAGGGGCAAGGTAGAGTGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGTTTTTTTTAAAAAGTCCCCCCAGGGGCAAGGTAGAGTGAATA  150

seq1  AAGTTGGGCTTATTTATTTATTTATTTATTTATTTATTTTTGTTAGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGGCTTATTTATTTATTTATTTATTTATTTATTTTTGTTAGTTTT  200

seq1  AACATGGAAACTGTCTTCTTCTTGGGTACACCATGCATGTTGTAATTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGAAACTGTCTTCTTCTTGGGTACACCATGCATGTTGTAATTCAC  250

seq1  ATTCGTCATCAGATTCGTGCACTGCGATCAATTTTATTTTATTCTCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTCATCAGATTCGTGCACTGCGATCAATTTTATTTTATTCTCTAAA  300

seq1  GGTGTGGGGCTTTGTGGGCATAAATGACTTTCAATGGTTGTGAAAGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGGGCTTTGTGGGCATAAATGACTTTCAATGGTTGTGAAAGTTTC  350

seq1  TCTTACCAAGCTTACAGTCCTGTGATACAGGTTTGAACTCTGTCTCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCAAGCTTACAGTCCTGTGATACAGGTTTGAACTCTGTCTCTGAC  400

seq1  AGTTTCTCAGAAGTGTGTATTAGAGAGTAGGTCATGAGGCTAGCCTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCAGAAGTGTGTATTAGAGAGTAGGTCATGAGGCTAGCCTGAGA  450

seq1  ACTGGAGACGGACCACATTCCTGCCAGAAAGAATTCAGGTTTTAAGTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGACGGACCACATTCCTGCCAGAAAGAATTCAGGTTTTAAGTGCA  500

seq1  GAGCAAACATTACAGATTATGACTTCCATTTAGATTTTGTTACTTTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAACATTACAGATTATGACTTCCATTTAGATTTTGTTACTTTCTGA  550

seq1  ATTATAAACGCCCTTCCCAAGAGCGACATCCCTCTGCCTGCTCTTCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAACGCCCTTCCCAAGAGCGACATCCCTCTGCCTGCTCTTCAGCT  600

seq1  TCTGAGAAGTCATCTCCCAAATCTGCCATTTTTTCATGTTATCCAGTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAAGTCATCTCCCAAATCTGCCATTTTTTCATGTTATCCAGTAAG  650

seq1  CGGCTTCACGGGACAAAAAAAGTCACTGCTTGCTCTCAACCTGATGTCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTCACGGGACAAAAAAAGTCACTGCTTGCTCTCAACCTGATGTCGC  700

seq1  CCCCACCCCCACCCCACCCCACCCCACCCCAGGGTTCTGCTTTAAAGCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCCACCCCACCCCACCCCACCCCAGGGTTCTGCTTTAAAGCGG  750

seq1  GCGGGCGGGCTTTATTTCCTGCCCTTTGTCTTCTCAAAGCTCCTCCTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCGGGCTTTATTTCCTGCCCTTTGTCTTCTCAAAGCTCCTCCTTGA  800

seq1  CTCTGTATCACACTGCTGCTTTGGTGTTTCTGATTCTTGATCGCGCTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATCACACTGCTGCTTTGGTGTTTCTGATTCTTGATCGCGCTCCA  850

seq1  CCACCGGCTCAAGCTTCCACTGAGTTTCAACAGCTGCGACATGTCTAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGGCTCAAGCTTCCACTGAGTTTCAACAGCTGCGACATGTCTAAAC  900

seq1  TGCATTATCTTGCAACTGTTGGCTCCGGTGAGAACGAGAAAGGAGCCAAG  950
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  TGCATTATCTTGCAACTGTTGGCTCCGGTGAGAACGAG-AAGGAGCCAGG  949

seq1  TGACTAAAACAAAACATTTCACCGGGTTCCTAT-GGATACGCCCTGCCAC  999
      |||||||||||||||||||||||||||| |||| ||||||| |||| || 
seq2  TGACTAAAACAAAACATTTCACCGGGTT-CTATGGGATACG-CCTG-CAT  996

seq1  CAGGAAGCGCG-CGCTGGGCGGGGCTGACTCCTTCAGCCTCCGATGGCCT  1048
      ||||||||||| |||||||| ||||||||| |||||| ||||||||  ||
seq2  CAGGAAGCGCGCCGCTGGGC-GGGCTGACTTCTTCAG-CTCCGATG--CT  1042

seq1  CTTCTGCGTGTTGCGTCCTTTGAGCATTCTGTAATGAGTGCCCG  1092
      ||||||||||||| ||||||||| ||||| || |||||||||||
seq2  CTTCTGCGTGTTG-GTCCTTTGAACATTC-GT-ATGAGTGCCCG  1083