BAC Information

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BAC

Clone NameB6Ng01-029K08
Chromosome14 (Build37)
Map Location 6,601,538 - 6,763,911
singlet/doubletdoublet
Overlap geneLOC100041442, LOC100041848, LOC100041456, LOC100041758, LOC100041470, LOC100041804
Upstream geneLOC100041515, LOC100041184, EG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215, LOC100041226, ENSMUSG00000057445, LOC100041598, LOC100041243, EG666684, LOC100041268, LOC100041279, LOC100041651, LOC100041287, LOC100041299, LOC666637, EG622640, LOC100041333, LOC100041678, LOC100041702, LOC100041363, LOC100041721, LOC100041784, LOC100041735, LOC100041406, LOC100041825, LOC100041421, LOC100041817, LOC100041431, LOC100041438
Downstream geneLOC100041487, LOC100041747, LOC100041507, LOC100041836, LOC100041728, LOC100041774, LOC100041530, LOC100041540, LOC100041840, EG666844, LOC666851, LOC100041569, LOC100041970, LOC100042000, EG666874, B930046C15Rik, LOC100041600, LOC100041958, LOC100041964, LOC546590, LOC666906, LOC100042024, LOC100041664, LOC100042077, LOC100041675, LOC666329, EG666833, LOC100042043, EG666918, LOC100041700, LOC100042054, LOC100042100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029K08.bB6Ng01-029K08.g
ACCDH859792DH859793
length1,1751,045
definitionDH859792|Mus musculus domesticus DNA, BAC clone: B6Ng01-029K08, 5' end.DH859793|Mus musculus domesticus DNA, BAC clone: B6Ng01-029K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,762,711 - 6,763,911)(6,601,538 - 6,602,224)
sequence
gaattcaacatcattaaatcacaacatgagaagacaatgttggatatgga
taaaatgacccagtccataattgcttccatgaagttctccgaggaactgt
taaaagataactattcctacaggtgagtcagtgacacaactgagaccccc
agaactaggtaggaaatgcttctgtccttttaggactttgaaaaaacgca
agggctctggttctatgttatcttttttttatttaggaaacctgccctga
ggcaagggtcttggatttgtacctcttggactcagttgtcctaagtgtga
aaagtgtccaagaccctccaatctttattcttccaaattcaaggacctct
acatagaaaacttttccaccacgctgggaatatccaggaaccctgaacct
ctaggtttctgaccacagattaaaagatctaggtttccagacaaaaatgg
aaagagtgtacaaatgttgggtcagctcaactctctcagaggagataagc
cctctccctgctgaaggttttatggtcccacagacctataatcaaccatg
aagaacatttcctcttctgtgatgtatagggtgcactcttggtgtcaggg
ctttcagaagtttgttgagtcctgtggaacatgggcggtatcttgatttg
acctgcctctgtttgctgctgctatgtatactgtagactcttctgggact
gtctggggttcagggcccttgtgggaccatgggacttgtagtagtggcaa
gccaatggaatctggctgggaatcaccaattttttttttttgtggatcag
catcaagcagaaacaccacctccgtgagtgcactcaaataaaggaaaaag
tgaggatattaccgaatgagaacagaaaggtgctgttggagcagctggaa
tgcaagtgtcccgtggggaagaaagaggttctgtgagaggccagcaagaa
catgtgtgtctcagtgccaagagcagcagtagatgtgtggtatcagagca
gattgcctcatgtctaacataacatagacaatccatgcaacagtccacca
acttctcaggcctcacttggtctcctcaagggtttgttatgtgatcatct
tacaggctctcttggagggagctgtcagaactgcatgtatggcatgcaat
gttccgtctgctagatcataaggga
gaattccttgatccacttagatttgaccttagtacaaggagataggaatg
gatcaattcccattcttctacatgttacccgccagtagtgccagcaccat
tttttgaaaatgctgtcttttctccactggatggttttagctcccttgtc
aaggatcaaatgaccataggtgtgtgggttcatttctgtgtattcaattt
tattccattggtctacttgtctatcgttataccaagaccatgcaattttt
gatcacaatgctctgtagtacagctttaggtcaggctaacaacaacaatt
tttaaaaaaccttctgagggatggaattacaagcttgtaccaaatctggt
caacttttgtatgtatttccaccagaggttcttttatcctggagaatggt
ttttgctatcctaggttttttgtaattccagatgaatttgcagattgccc
tttctaattcattgaagaattgagttggaattttgatgaagattgcattg
aatctgtagattgcatttgacaagatagccatttttactatattgatcct
gccaatccatgagcatagaagatctttccatcttctgagatcttctttaa
tttctttcttcagagacttgaagttcttatcatacagatcttttacttcc
ttagttagagtcacaccaaggtattttctattggtttttactcttgtgaa
cagtgttgtttccctaatttctttctcagcccatttcaaaagaccaagtc
agaatcagtgtcaatctcttactccctgcagatcaggatgttagttagct
cttagctgttgctctagcactaggcctgcctgtctgcggccatacttcca
ccatgatgaccttgggactatatgaaactctaagcaagccctcagttaaa
agcttcattgtatcttacattgtttgtagtatttcatcacagtaatagaa
cagtgactaccacaggcaaggaaagagtttctctcagcttacagttatag
accatcatgaactggagtcgcgcatgcgcaatggtggaccctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_6762711_6763911
seq2: B6Ng01-029K08.b_47_1221 (reverse)

seq1  TCCCTTAGTGATTCTAGCAGAGCAGGAACATTTGCATGACAAACATGCAG  50
      ||||||| ||| |||||||||   |||||| ||||||| || ||||||||
seq2  TCCCTTA-TGA-TCTAGCAGA--CGGAACA-TTGCATGCCATACATGCAG  45

seq1  TTTCTTGAACCAGGCTACCTCCACAGAGAGTCCTGT-AGATGATCACATA  99
      ||   |||  || ||| |||||| |||||| ||||| |||||||||||| 
seq2  TT--CTGA--CA-GCTCCCTCCA-AGAGAG-CCTGTAAGATGATCACAT-  87

seq1  AACAAACACTTGGAGGAGACATAGGTGAGTGCCTGGAGAAGTTGGTGGAC  149
      ||||||| ||| ||||||||  | ||||| |||| |||||||||||||||
seq2  AACAAACCCTT-GAGGAGAC-CAAGTGAG-GCCT-GAGAAGTTGGTGGAC  133

seq1  TGTGACATTGGATTGTCTATGTTTATGTTTAGACATGAGGGCAATCTGCC  199
      |||  || ||||||||||||| ||||| |||||||||| ||||||||| |
seq2  TGTTGCA-TGGATTGTCTATG-TTATG-TTAGACATGA-GGCAATCTG-C  178

seq1  TCTGATA-CACATCATCCTACCTGCTGCTCCTTGGCACTTGAGGCACAGA  248
      ||||||| |||| ||| ||| |||||||| |||||||| |||| |||| |
seq2  TCTGATACCACA-CAT-CTA-CTGCTGCT-CTTGGCAC-TGAGACACACA  223

seq1  TGTTCTTGCTGGCCTCCTCACAGAACCTCTTTTCTTCCCCATGGGACACT  298
      ||||||||||||||| ||||||||||||| ||||||||||| ||||||||
seq2  TGTTCTTGCTGGCCT-CTCACAGAACCTC-TTTCTTCCCCACGGGACACT  271

seq1  TGCCTTCCAGCCTGCTCCACCAGCAGCTTTCTGTTCTCATTCAGTAATAT  348
      ||| |||||| |||||||| ||||| |||||||||||||||| |||||||
seq2  TGCATTCCAG-CTGCTCCAACAGCACCTTTCTGTTCTCATTCGGTAATAT  320

seq1  CCTCACTTTTTCCTTTAGTTGAGAGCACTCACGGAGGCGGTGTTTCTGCT  398
      ||||||||||||||||| ||||| ||||||||||||| ||||||||||||
seq2  CCTCACTTTTTCCTTTATTTGAGTGCACTCACGGAGGTGGTGTTTCTGCT  370

seq1  TGATGCTGATCCAC---AAAGAAAAATTGGTGATTCCCAGCCAGATTCCA  445
      ||||||||||||||   ||| |||||||||||||||||||||||||||||
seq2  TGATGCTGATCCACAAAAAAAAAAAATTGGTGATTCCCAGCCAGATTCCA  420

seq1  TTGGCTTTCCACTCCTACAAGTCCCATGGTCCCACTAGGGCCCTGAACCC  495
      ||||||| ||||| ||||||||||||||||||||| ||||||||||||||
seq2  TTGGCTTGCCACTACTACAAGTCCCATGGTCCCACAAGGGCCCTGAACCC  470

seq1  CTGACAGTCCCAGAAGAGTCTACAGTATATGTAGCAGCACCAAACAGAGG  545
      | |||||||||||||||||||||||||||  |||||||| ||||||||||
seq2  CAGACAGTCCCAGAAGAGTCTACAGTATACATAGCAGCAGCAAACAGAGG  520

seq1  CAGGTCAAATCAAGATACCAGCCATATTCCACAGGACTCAACAAACTTCT  595
      |||||||||||||||||||  |||| ||||||||||||||||||||||||
seq2  CAGGTCAAATCAAGATACCGCCCATGTTCCACAGGACTCAACAAACTTCT  570

seq1  GAAAGCCCTGACACCAAGAGTGCACCCTATACATCACAGAAGAGGAAATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCCTGACACCAAGAGTGCACCCTATACATCACAGAAGAGGAAATG  620

seq1  TTCTTCATGGTTGATTATAGGTCTGTGGGACCATAAAACCTTCAGCAGGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATGGTTGATTATAGGTCTGTGGGACCATAAAACCTTCAGCAGGG  670

seq1  AGAGGGCTTATCTCCTCTGAGAGAGGTGAGCTGACCCAACAAGTGTACAC  745
      ||||||||||||||||||||||||| |||||||||||||||  |||||||
seq2  AGAGGGCTTATCTCCTCTGAGAGAGTTGAGCTGACCCAACATTTGTACAC  720

seq1  TCTTTCCATTTTTGTCGGGAATCCTAGATCTTTTAATCTGTGGTCAGAAC  795
      |||||||||||||||| |||| ||||||||||||||||||||||||||| 
seq2  TCTTTCCATTTTTGTCTGGAAACCTAGATCTTTTAATCTGTGGTCAGAAA  770

seq1  CCTAGAGGTTCAGGGTTCCTGGATATTCCCAGCGTGGTGGAAAAGTTTTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGGTTCAGGGTTCCTGGATATTCCCAGCGTGGTGGAAAAGTTTTC  820

seq1  TATATAGAGGGCCTTGAATTTGGAAGAATAAAGATTGGAGGGTCTTGGAC  895
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGAGGTCCTTGAATTTGGAAGAATAAAGATTGGAGGGTCTTGGAC  870

seq1  ACTCTTCACACTTAGGACAACTGAGTCCAAGAGGTACAAATCCAAGACCC  945
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCACACTTAGGACAACTGAGTCCAAGAGGTACAAATCCAAGACCC  920

seq1  TTGCCTCAGGGCAGTGTTCCTAAATAAAAAAACAGATAACATAGAACCAG  995
      ||||||||||||||  |||||||||||||||| |||||||||||||||||
seq2  TTGCCTCAGGGCAGGTTTCCTAAATAAAAAAA-AGATAACATAGAACCAG  969

seq1  AGCCCTTGTGTTTTTTCAAAGTCGTAAAAGGACAGAAGCATTCCCTGCCT  1045
      |||||||| |||||||||||||| |||||||||||||||||| ||| |||
seq2  AGCCCTTGCGTTTTTTCAAAGTCCTAAAAGGACAGAAGCATTTCCTACCT  1019

seq1  AGTTCTGGGGGTCTCAGTTGTGTCACTGACTCACCTGTAGGAATAGTTAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGGGGGTCTCAGTTGTGTCACTGACTCACCTGTAGGAATAGTTAT  1069

seq1  CTTTTAACAGTTCCTCGGAGAACTTCATGGAAATAATTATGGACTGGGTC  1145
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  CTTTTAACAGTTCCTCGGAGAACTTCATGGAAGCAATTATGGACTGGGTC  1119

seq1  ATTTTATCCATATCCAACATTGTCTTCTCATGTTGTGATTTAATGATGTT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCCATATCCAACATTGTCTTCTCATGTTGTGATTTAATGATGTT  1169

seq1  GAATTC  1201
      ||||||
seq2  GAATTC  1175

seq1: chr14_6601538_6602224
seq2: B6Ng01-029K08.g_427_1110

seq1  TGTATTTCCACCAGAGGTTCTTTTATCCTGGAGAACAGTTTTTGCTATCC  50
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  TGTATTTCCACCAGAGGTTCTTTTATCCTGGAGAATGGTTTTTGCTATCC  50

seq1  TAGGTTTTTTGTAATTCCAGATGAATTTGCAGATTGCCCTTTCTAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTTTGTAATTCCAGATGAATTTGCAGATTGCCCTTTCTAATTCA  100

seq1  TTGAAGAATTGAGTTGGAATTTTGATGAAGATTGCATTGAATCTGTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAATTGAGTTGGAATTTTGATGAAGATTGCATTGAATCTGTAGAT  150

seq1  TGCATTTGACAAGATAGCCATTTTTACTATATTGATCCTGCTAATCCATG  200
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGCATTTGACAAGATAGCCATTTTTACTATATTGATCCTGCCAATCCATG  200

seq1  AGCATAGAAGACCTTTCCATCTTCTGAGATCTTCTTTAATATCTTTCTTC  250
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  AGCATAGAAGATCTTTCCATCTTCTGAGATCTTCTTTAATTTCTTTCTTC  250

seq1  AGAGACTTGAAGTTCATATCATACAGATCTTTTACTTCCTTAGTTAGAGT  300
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAGACTTGAAGTTCTTATCATACAGATCTTTTACTTCCTTAGTTAGAGT  300

seq1  AACACGAAGGTATTTTCTATTGGTTTTTACTCTTGTGAACAGTGTTGTTT  350
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAAGGTATTTTCTATTGGTTTTTACTCTTGTGAACAGTGTTGTTT  350

seq1  CCGTAAGTTCTTTCTCAGCCCATTTCAAAAGACCAAGTCAGAATCAGTGT  400
      || ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATTTCTTTCTCAGCCCATTTCAAAAGACCAAGTCAGAATCAGTGT  400

seq1  CAATCTCTTTCTCCCTCCAGATCAGGATGTTAGTAAGCTCTTAGCTGTTG  450
      ||||||||| |||||| ||||||||||||||||| |||||||||||||||
seq2  CAATCTCTTACTCCCTGCAGATCAGGATGTTAGTTAGCTCTTAGCTGTTG  450

seq1  CTCTAGCACTAGGCCTGCCTGTCTGGGGGCCATACTTCCAAACATGATGA  500
      |||||||||||||||||||||||| | |||||||||||| | ||||||||
seq2  CTCTAGCACTAGGCCTGCCTGTCT-GCGGCCATACTTCC-ACCATGATGA  498

seq1  CCAT-GGACTCTATGAAACTCTAAGCAAGCCCTCAGATAAAAGCTTCATT  549
      || | ||||| ||||||||||||||||||||||||| |||||||||||||
seq2  CCTTGGGACTATATGAAACTCTAAGCAAGCCCTCAGTTAAAAGCTTCATT  548

seq1  GTATGTTACCTTGTTTATAGTATTTCATCACAGCAATAGAACAGTGACTA  599
      |||| |||| |||||| |||||||||||||||| ||||||||||||||||
seq2  GTATCTTACATTGTTTGTAGTATTTCATCACAGTAATAGAACAGTGACTA  598

seq1  CCACAGGC-AGTAAAGAATTTCTCCCAGCTTACAGTTATAGACCATCATG  648
      |||||||| || ||||| |||||| |||||||||||||||||||||||||
seq2  CCACAGGCAAGGAAAGAGTTTCTCTCAGCTTACAGTTATAGACCATCATG  648

seq1  AACTGAAGTCAGTGCAGGACGCCATGGTGGAGCCCTGCT  687
      ||||| |||| | ||| | ||| |||||||| |||||||
seq2  AACTGGAGTC-GCGCATG-CGCAATGGTGGA-CCCTGCT  684