BAC Information

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BAC

Clone NameB6Ng01-029M05
Chromosome14 (Build37)
Map Location 5,266,393 - 5,383,609
singlet/doubletdoublet
Overlap geneLOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740
Upstream geneLOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765
Downstream geneLOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515, LOC100041184, EG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215, LOC100041226, ENSMUSG00000057445, LOC100041598, LOC100041243, EG666684, LOC100041268, LOC100041279, LOC100041651, LOC100041287, LOC100041299, LOC666637, EG622640, LOC100041333, LOC100041678, LOC100041702, LOC100041363, LOC100041721
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029M05.bB6Ng01-029M05.g
ACCDH859870DH859871
length1,1351,104
definitionDH859870|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M05, 5' end.DH859871|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,382,464 - 5,383,609)(5,266,393 - 5,267,511)
sequence
gaattctccagctttggaaggagaggttgccaaaggggatcccacgggtc
catgagaggttccaggagaggcaccccagaaaaggaccaagctgggcaga
actagttagcaggtagatcatggcagttgctagtgacatcatcagtaatg
ccttccttggagaatctcttgtatctaggagagaactagaatcctctgtg
ttgtcacctgtgttgtggtgacagcaactgcctgtgtttcatcccttctg
tttgctctgggttcaccagcaggaatgttttcctggctgctcaggctatg
tcagaaagagaatggcaatgaaggagagaccagaccaaaaaagaaggaag
agggaatcctttctcatgaaaaaggaagaaggaaattgttctggagaagg
cacagtgagtcctgggcaaggttggggaacttcctggtagaggtaggctt
gagctgggccttccaggagtaggtcttacaagctgaagccttggactttg
tcaatgtcagacaaagagtcaagaatttctgataattagtttaacagagc
caggaattgacaaacctgcagctacttttctgggagctatttaatttcat
tttgagtggcaaagaatgccaggagtgggcactatgagaataacagtaca
tcctttcatggaagggagttgaagcacttcaccttccagattactgtaag
taacttgaatctctgatgaaaagaacagagaaggatgctcccctggtcat
gtcatgtggtgaggtctcagacactttggatttgaagacacatgattaat
tagggcttgatagtgctaagcactatgaactccaggatttccctgcatca
catctgatatgacctgacaatgttccccatatctttatgtttgaggcagc
ttatagatttcagggcaaggggcctgtaacaggagtgtggcatatgtctg
acaatggttgttaggaagaggaacatatcttacaaacagctagaaaatac
ctttctgctcttttatggattcaccctgtctttacctttctctccctcag
tcttcttcttgggactctgaatgacctccctgccactgagcatcagtatg
caatcatttttgttatcaatctggcagggtctgct
gaattctccagctttggaaggagaggttgccaaaggggatcacacgggtc
catgagaggctccaggagaggcaccccagaaaaggaccaagctgggcaga
actagttaacaggtaggtcatggcagttgctagtgacatcatcagtaatg
ccttccttggagaatctcttgtatctaggatagaactagaatcttctgtg
ttgtcacctgtgttgtggtgacagcaactgcctgtggttcatcccttctg
tttgctctgggttcaccagcaggaatgttttcctggctgctcaggctatt
tcagaaagagaatggctatgaaggagagaccagaccaacagagaaggaag
agggaatcctttctcatgaaaaaggaagaaggaaatggttatggagaagg
cacagtgagtcctgggcagagttggggaaattcctggtagaggtaggctt
gagctgggccttccaggagtaggtcttacaagctgaagccttggactttg
tcaatgtcaaagagtcaagaatttctgatgattagtttgacagagccagg
aattgacaaacctgcagctacttttctgggagctatttaatttcattttg
agtggcaaaaaatgccaggagtgggcactatgagaataacagtgtgtcct
ttcatggaagggagttgaagcacttcatcttccagattactgtaggtaac
ttgagtctctgatgaaaagaacagagaaggatgctcccctggtcatgtca
tgtggtgaggactcagacactttggatttgaagacacacgattaattagt
gcttgatagtgctaagcactatgaacttcagatttccctgcgtcccatct
gatatgacctgacaatgttcccatatctttatgtctgaggcagcttatac
atttcaaggcaccgggcctgtacagggagtgtggcatatgtctgacatgg
tggttaggagaggaacatagcttagcaaaccagctggagatagcttttct
gctctttaggattcactgtttttatctttttctctcctccacttcttctt
gggactcagaatgtctcctctgcctctgggcatcaagatgcaattctttg
tgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_5382464_5383609
seq2: B6Ng01-029M05.b_45_1179 (reverse)

seq1  AGCAGACCCTG-CAGATAGATAAACACAAATGAATTTGCATACTTGATGG  49
      ||||||||||| ||||| ||| |||| ||||||  |||||||| |||| |
seq2  AGCAGACCCTGCCAGATTGAT-AACAAAAATGA--TTGCATAC-TGAT-G  45

seq1  CCCAGTGGCAGGGGAGACCATTCAGAGTCCCAAGAAGAAGACTGAGGGAG  99
      | |||||||| |||||  ||||||||||||||||||||||||||||||||
seq2  CTCAGTGGCA-GGGAGGTCATTCAGAGTCCCAAGAAGAAGACTGAGGGAG  94

seq1  AGAAAAGGTAAAGACAGGGTGAATCCATAAAAGAGCAGGAAAGCTATCTT  149
      || |||||||||||||||||||||||||||||||||| ||||| ||| ||
seq2  AG-AAAGGTAAAGACAGGGTGAATCCATAAAAGAGCA-GAAAGGTATTTT  142

seq1  CTAGCTGGTTTGCTAAGCTATGTTCCTCTTCCTAACAACCATTGTCAGAC  199
      |||||| ||||| |||| ||||||||||||||||||||||||||||||||
seq2  CTAGCT-GTTTG-TAAGATATGTTCCTCTTCCTAACAACCATTGTCAGAC  190

seq1  ATATGCCACACTCCCTGTTACAGGCCCCCTTGCCCTGAAATCTATAAGCT  249
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  ATATGCCACACT-CCTGTTACAGG-CCCCTTGCCCTGAAATCTATAAGCT  238

seq1  GCCTCAAACATAAAGATATGGGGAACATTGTCAGGTCATATCAGATGTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAACATAAAGATATGGGGAACATTGTCAGGTCATATCAGATGTGA  288

seq1  TGCAGGGAAATCCTGGAGTTCATAGTGCTTAGCACTATCAAGCCCTAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGAAATCCTGGAGTTCATAGTGCTTAGCACTATCAAGCCCTAATT  338

seq1  AATCATGTGTCTTCAAATCCAAAGTGTCTGAGACCTCACCACATGACATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGTGTCTTCAAATCCAAAGTGTCTGAGACCTCACCACATGACATG  388

seq1  ACCAGGGGAGCATCCTTCTCTGTTCTTTTCATCAGAGATTCAAGTTACTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGGAGCATCCTTCTCTGTTCTTTTCATCAGAGATTCAAGTTACTT  438

seq1  ACAGTAATCTGGAAGGTGAAGTGCTTCAACTCCCTTCCATGAAAGGATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATCTGGAAGGTGAAGTGCTTCAACTCCCTTCCATGAAAGGATGT  488

seq1  ACTGTTATTCTCATAGTGCCCACTCCTGGCATTCTTTGCCACTCAAAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTATTCTCATAGTGCCCACTCCTGGCATTCTTTGCCACTCAAAATG  538

seq1  AAATTAAATAGCTCCCAGAAAAGTAGCTGCAGGTTTGTCAATTCCTGGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATAGCTCCCAGAAAAGTAGCTGCAGGTTTGTCAATTCCTGGCT  588

seq1  CTGTTAAACTAATTATCAGAAATTCTTGACTCTTTGTCTGACATTGACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAACTAATTATCAGAAATTCTTGACTCTTTGTCTGACATTGACAA  638

seq1  AGTCCAAGGCTTCAGCTTGTAAGACCTACTCCTGGAAGGCCCAGCTCAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAGGCTTCAGCTTGTAAGACCTACTCCTGGAAGGCCCAGCTCAAG  688

seq1  CCTACCTCTACCAGGAAGTTCCCCAACCTTGCCCAGGACTCACTGTGCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTCTACCAGGAAGTTCCCCAACCTTGCCCAGGACTCACTGTGCCT  738

seq1  TCTCCAGAACAATTTCCTTCTTCCTTTTTCATGAGAAAGGATTCCCTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAACAATTTCCTTCTTCCTTTTTCATGAGAAAGGATTCCCTCTT  788

seq1  CCTTCTTTTTTGGTCTGGTCTCTCCTTCATTGCCATTCTCTTTCTGACAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTTTTGGTCTGGTCTCTCCTTCATTGCCATTCTCTTTCTGACAT  838

seq1  AGCCTGAGCAGCCAGGAAAACATTCCTGCTGGTGAACCCAGAGCAAACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGCAGCCAGGAAAACATTCCTGCTGGTGAACCCAGAGCAAACAG  888

seq1  AAGGGATGAAACACAGGCAGTTGCTGTCACCACAACACAGGTGACAACAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATGAAACACAGGCAGTTGCTGTCACCACAACACAGGTGACAACAC  938

seq1  AGAGGATTCTAGTTCTCTCCTAGATACAAGAGATTCTCCAAGGAAGGCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATTCTAGTTCTCTCCTAGATACAAGAGATTCTCCAAGGAAGGCAT  988

seq1  TACTGATGATGTCACTAGCAACTGCCATGATCTACCTGCTAACTAGTTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATGATGTCACTAGCAACTGCCATGATCTACCTGCTAACTAGTTCT  1038

seq1  GCCCAGCTTGGTCCTTTTCTGGGGTGCCTCTCCTGGAACCTCTCATGGAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCTTGGTCCTTTTCTGGGGTGCCTCTCCTGGAACCTCTCATGGAC  1088

seq1  CCGTGGGATCCCCTTTGGCAACCTCTCCTTCCAAAGCTGGAGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGGATCCCCTTTGGCAACCTCTCCTTCCAAAGCTGGAGAATTC  1135

seq1: chr14_5266393_5267511
seq2: B6Ng01-029M05.g_67_1170

seq1  GAATTCTCCAGCTTTGGAAGGAGAGGTTGCCAAAGGGGATCACACGGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGCTTTGGAAGGAGAGGTTGCCAAAGGGGATCACACGGGTC  50

seq1  CATGAGAGGCTCCAGGAGAGGCACCCCAGAAAAGGACCAAGCTGGGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAGGCTCCAGGAGAGGCACCCCAGAAAAGGACCAAGCTGGGCAGA  100

seq1  ACTAGTTAACAGGTAGGTCATGGCAGTTGCTAGTGACATCATCAGTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTAACAGGTAGGTCATGGCAGTTGCTAGTGACATCATCAGTAATG  150

seq1  CCTTCCTTGGAGAATCTCTTGTATCTAGGATAGAACTAGAATCTTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTGGAGAATCTCTTGTATCTAGGATAGAACTAGAATCTTCTGTG  200

seq1  TTGTCACCTGTGTTGTGGTGACAGCAACTGCCTGTGGTTCATCCCTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACCTGTGTTGTGGTGACAGCAACTGCCTGTGGTTCATCCCTTCTG  250

seq1  TTTGCTCTGGGTTCACCAGCAGGAATGTTTTCCTGGCTGCTCAGGCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTGGGTTCACCAGCAGGAATGTTTTCCTGGCTGCTCAGGCTATT  300

seq1  TCAGAAAGAGAATGGCTATGAAGGAGAGACCAGACCAACAGAGAAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGAGAATGGCTATGAAGGAGAGACCAGACCAACAGAGAAGGAAG  350

seq1  AGGGAATCCTTTCTCATGAAAAAGGAAGAAGGAAATGGTTATGGAGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATCCTTTCTCATGAAAAAGGAAGAAGGAAATGGTTATGGAGAAGG  400

seq1  CACAGTGAGTCCTGGGCAGAGTTGGGGAAATTCCTGGTAGAGGTAGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGAGTCCTGGGCAGAGTTGGGGAAATTCCTGGTAGAGGTAGGCTT  450

seq1  GAGCTGGGCCTTCCAGGAGTAGGTCTTACAAGCTGAAGCCTTGGACTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGGCCTTCCAGGAGTAGGTCTTACAAGCTGAAGCCTTGGACTTTG  500

seq1  TCAATGTCAAAGAGTCAAGAATTTCTGATGATTAGTTTGACAGAGCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTCAAAGAGTCAAGAATTTCTGATGATTAGTTTGACAGAGCCAGG  550

seq1  AATTGACAAACCTGCAGCTACTTTTCTGGGAGCTATTTAATTTCATTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACAAACCTGCAGCTACTTTTCTGGGAGCTATTTAATTTCATTTTG  600

seq1  AGTGGCAAAAAATGCCAGGAGTGGGCACTATGAGAATAACAGTGTGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAAAAAATGCCAGGAGTGGGCACTATGAGAATAACAGTGTGTCCT  650

seq1  TTCATGGAAGGGAGTTGAAGCACTTCATCTTCCAGATTACTGTAGGTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGAAGGGAGTTGAAGCACTTCATCTTCCAGATTACTGTAGGTAAC  700

seq1  TTGAGTCTCTGATGAAAAGAACAGAGAAGGATGCTCCCCTGGTCATGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCTCTGATGAAAAGAACAGAGAAGGATGCTCCCCTGGTCATGTCA  750

seq1  TGTGGTGAGGACTCAGACACTTTGGATTTGAAGACACACGATTAATTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGAGGACTCAGACACTTTGGATTTGAAGACACACGATTAATTAGT  800

seq1  GCTTGATAGTGCTAAGCACTATGAACTTCAGGATTTCCCTGCGTCCCATC  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCTTGATAGTGCTAAGCACTATGAACTTCA-GATTTCCCTGCGTCCCATC  849

seq1  TGATATGACCTGACAATGTTCCCCATATCTTTATGTCTGAGGCAGCTTAT  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGATATGACCTGACAATGTT-CCCATATCTTTATGTCTGAGGCAGCTTAT  898

seq1  ACATTTCAAGGCAACCGGGCCTGTAACAGGGAGTGTGGCATATGTCTGAC  950
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  ACATTTCAAGGC-ACCGGGCCTGT-ACAGGGAGTGTGGCATATGTCTGAC  946

seq1  AATGGTGGTTAGGAAGAGGAACATAGCTTAGCAAACCAGCTGGAAGATAG  1000
       |||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  -ATGGTGGTTAGG-AGAGGAACATAGCTTAGCAAACCAGCTGG-AGATAG  993

seq1  CTTTTCTGCTCTTTTAGGAATTCACTGTCTTTATCTTTTCTCTC-CCTCC  1049
      ||||||||||| |||||| ||||||||| |||||||||| |||| |||||
seq2  CTTTTCTGCTC-TTTAGG-ATTCACTGTTTTTATCTTTT-TCTCTCCTCC  1040

seq1  ATCTTCTTCTTGGGACTCAGAATGGTCTCCCCTGCCCCTGGGCCATCAAG  1099
      | ||||||||||||||||||||| |||||| ||||| ||||| |||||||
seq2  A-CTTCTTCTTGGGACTCAGAAT-GTCTCCTCTGCCTCTGGG-CATCAAG  1087

seq1  TATGCAAATTCTTTTGTGTT  1119
       |||| ||||| ||||||||
seq2  -ATGC-AATTC-TTTGTGTT  1104