BAC Information

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BAC

Clone NameB6Ng01-030O12
ChromosomeX (Build37)14 (Build37)
Map Location 36,331,020 - 36,331,53637,058,970 - 37,060,043
singlet/doubletsingletsinglet
Overlap geneLOC670539
Upstream gene4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171
Downstream geneLOC100039700, 1700085A12Rik, LOC100039715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030O12.bB6Ng01-030O12.g
ACCDH860673DH860674
length1,0001,050
definitionDH860673|Mus musculus domesticus DNA, BAC clone: B6Ng01-030O12, 5' end.DH860674|Mus musculus domesticus DNA, BAC clone: B6Ng01-030O12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,331,020 - 36,331,536)(37,058,970 - 37,060,043)
sequence
gaattcctgatctttccaagacttttatcatgaatggatgttggattttg
tcaaatgctttctcagcatctaacgagacgatcatgtggtttttgtcctt
gagtttgtttatatactggattacattgatggatttccgtatattgaacc
atccctgcatccctgggatgaaacctacttggtcaggatggatgattgtt
ttgatgtgttcttggattcggttagcaagaattttattgaggatttttgc
atctatattcataagggaaattggtctgaagtactctatctttgttgggt
ctttttgtggtttaggtatcagggtaattgtggcttcatagaaggagttg
ggtagagtaccttccgtttctattttgtggaatagtttgtgaagaactgg
aattaggtcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgtgctttttttggctgggagactattaatgactgcttctatttct
ttaggggatataggactgttgagatcattaacctgatcttgatttagctt
tggtacctggtatctgtctagaaacttgtccatttcatccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcctttttcatttctgattttgttaaa
ttaggatgctttccctgtgccctctattgagtctggctaaggtttatcta
tcttgttgattttctcaaagaaccagctccttgattggttgattttttga
acagttcttcttgtttccacttggttgatttcacccctgagtttgatatt
tcctgccgtctactcctcttgggtgaattttcttcctttcttctagaact
tttagtgtgtgtcaagctgctaatgtgtgctctctctagtttctttttgg
aggcactcgaacctatgagttttctccttagaagctttcattgtgtccca

gaattccaaagtgaagtgaggttaaaagacaagtcataaaatggggtaaa
tgacttgctacacataaaacaagaggcatccatgttcatatattgtcatg
tgcatctttgaattaatatgattacagacaaagcaattcaaagtggataa
atgagaaaaccaatggtttaaagaataaaaactctgatggcctagaaatg
agtatgttcaaatctgttctgtcataggaaaaatcaggaaggaataaagg
ggaaatacagtgttacctcatgtcttgccaatcaatgtggtgaagaccaa
gttgttattgtcagtctgttttaggtatttacaattactctgcattgttg
agctgactggctttggaataattcacttgtgtctgtgagggtattttcca
tcctgaatatggcaatgtctgtaagaagtagagaaggacaataaaacaaa
taaaatgaagatattggaaaacccccattgcgctagacagaaaagagtca
ctttgggaagtcactttagttttcattctcttctgcttcttttgtgcatg
tgtatgtattcatgtgcatatgtgtgggagtgaatttgtgaatgtgtgta
tgcatgtggaggccagagattcacatcaggtgccttcaccaatcattctc
taccatacttgcttgagaaagagactcactgaacttgaagcttattggtt
tggttggactaactggccaacaaagccccagtctttagttgcttagtact
gagataacaagatttttatggaggcactactgataaactctgtaattaaa
gttacatggcaagaactttattcactgaacatctcctgaacccacttttc
tataatctacttatctatctatctatctatctatctatctatctatctat
ctatctactacctacctatctactatcttttactactatctctcgctgag
ctagtatctcgcggcaagaatcactcggacaccgatcctctacgcaagct
ttatgcttcaacataaggagacccgaaccgaatggggctgcttattagct

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_36331020_36331536
seq2: B6Ng01-030O12.b_536_1047 (reverse)

seq1  TGGGACACAATGAAAGCATTCCTAAGAGGAAAACTCATAGCTCTGAGTGC  50
      |||||||||||||||||  | |||||  |||||||||||| |  ||||||
seq2  TGGGACACAATGAAAGC--TTCTAAGGAGAAAACTCATAGGTTCGAGTGC  48

seq1  CTCCAAAAAGAAACTAGAGAGAGCACACATTAGCAGCTTGACAACACACC  100
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  CTCCAAAAAGAAACTAGAGAGAGCACACATTAGCAGCTTGAC-ACACA-C  96

seq1  TAAAAGGTCTAGAAGAAAAGGAAGCAAATACACCCAAGAGGAGTAGAAGG  150
      |||||| |||||||| |||||||| |||| ||||||||||||||||| ||
seq2  TAAAAGTTCTAGAAG-AAAGGAAGAAAATTCACCCAAGAGGAGTAGACGG  145

seq1  CAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAG  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAT-ATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAG  194

seq1  AACTGTTCAAAGAATCAACCAATCAAGGAGCTGGTTCTTTGAGAAAATCA  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTCAAAAAATCAACCAATCAAGGAGCTGGTTCTTTGAGAAAATCA  244

seq1  ACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGGCACAGGGAAAGC  300
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  ACAAGATAGATAAA-CCTTAGCCAGACTCAATAGAGGGCACAGGGAAAGC  293

seq1  ATCCTAA-TTAACAAAATCAGAAA-GAAAAGGGAGACATAACAACAGATC  348
      ||||||| |||||||||||||||| ||||| |||||||||||||||||||
seq2  ATCCTAATTTAACAAAATCAGAAATGAAAAAGGAGACATAACAACAGATC  343

seq1  CTGAACAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCA  398
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCA  393

seq1  ACAAAACTGGAAAACCTGGATGAAATGGACAAGTTTCTAGACAGATACCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTGGAAAACCTGGATGAAATGGACAAGTTTCTAGACAGATACCA  443

seq1  GGTACCAAAGCTAAATCAAGATCAGGTTAATGATCTCAACAGTCCTATAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCAAAGCTAAATCAAGATCAGGTTAATGATCTCAACAGTCCTATAT  493

seq1  CCCCTCAAGAAATAGAAGC  517
      ||||| |||||||||||||
seq2  CCCCTAAAGAAATAGAAGC  512

seq1: chr14_37058970_37060043
seq2: B6Ng01-030O12.g_68_1117

seq1  GAATTCCAAAGTGAAGTGAGGTTAAAAGACAAGTCATAAAATGGGGTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGTGAAGTGAGGTTAAAAGACAAGTCATAAAATGGGGTAAA  50

seq1  TGACTTGCTACACATAAAACAAGAGGCATCCATGTTCATATATTGTCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGCTACACATAAAACAAGAGGCATCCATGTTCATATATTGTCATG  100

seq1  TGCATCTTTGAATTAATATGATTACAGACAAAGCAATTCAAAGTGGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTTTGAATTAATATGATTACAGACAAAGCAATTCAAAGTGGATAA  150

seq1  ATGAGAAAACCAATGGTTTAAAGAATAAAAACTCTGATGGCCTAGAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAACCAATGGTTTAAAGAATAAAAACTCTGATGGCCTAGAAATG  200

seq1  AGTATGTTCAAATCTGTTCTGTCATAGGAAAAATCAGGAAGGAATAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTTCAAATCTGTTCTGTCATAGGAAAAATCAGGAAGGAATAAAGG  250

seq1  GGAAATACAGTGTTACCTCATGTCTTGCCAATCAATGTGGTGAAGACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATACAGTGTTACCTCATGTCTTGCCAATCAATGTGGTGAAGACCAA  300

seq1  GTTGTTATTGTCAGTCTGTTTTAGGTATTTACAATTACTCTGCATTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTATTGTCAGTCTGTTTTAGGTATTTACAATTACTCTGCATTGTTG  350

seq1  AGCTGACTGGCTTTGGAATAATTCACTTGTGTCTGTGAGGGTATTTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACTGGCTTTGGAATAATTCACTTGTGTCTGTGAGGGTATTTTCCA  400

seq1  TCCTGAATATGGCAATGTCTGTAAGAAGTAGAGAAGGACAATAAAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATATGGCAATGTCTGTAAGAAGTAGAGAAGGACAATAAAACAAA  450

seq1  TAAAATGAAGATATTGGAAAACCCCCATTGCGCTAGACAGAAAAGAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAAGATATTGGAAAACCCCCATTGCGCTAGACAGAAAAGAGTCA  500

seq1  CTTTGGGAAGTCACTTTAGTTTTCATTCTCTTCTGCTTCTTTTGTGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGAAGTCACTTTAGTTTTCATTCTCTTCTGCTTCTTTTGTGCATG  550

seq1  TGTATGTATTCATGTGCATATGTGTGGGAGTGAATTTGTGAATGTGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATTCATGTGCATATGTGTGGGAGTGAATTTGTGAATGTGTGTA  600

seq1  TGCATGTGGAGGCCAGAGATTCACATCAGGTGCCTTCACCAATCATTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGGAGGCCAGAGATTCACATCAGGTGCCTTCACCAATCATTCTC  650

seq1  TACCATACTTGCTTGAGAAAGAGACTCACTGAACTTGAAGCTTATTGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATACTTGCTTGAGAAAGAGACTCACTGAACTTGAAGCTTATTGGTT  700

seq1  TGGTTGGACTAACTGGCCAAC-AAGCCCCAGTCTTTAGTTGCTTAGTACT  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGGTTGGACTAACTGGCCAACAAAGCCCCAGTCTTTAGTTGCTTAGTACT  750

seq1  GAGATAACAAGATTTTTATGGAGGCACTACTGATAAACTCTGTAATTAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGATAACAAGATTTTTATGGAGGCACTACTGATAAACTCTGTAATTAAA  800

seq1  GTTACATGGCAAGAACTTTATTCACTGAAACATCTCCTGAACCCACTTTT  849
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  GTTACATGGCAAGAACTTTATTCACTG-AACATCTCCTGAACCCAC-TTT  848

seq1  TCTATAATCTACTTATCTATCTATCTATCTATCTATCTATCTATCTATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAATCTACTTATCTATCTATCTATCTATCTATCTATCTATCTATCT  898

seq1  ATCTATCTACCTACCTACCTATCTTACCTATCTATTTACCTACCTATCTC  949
      ||||||||| ||||||||||||||   |||||| |||| ||| |||||||
seq2  ATCTATCTA-CTACCTACCTATCT--ACTATCT-TTTA-CTA-CTATCTC  942

seq1  TCGCCTGAGCTAGTATCTCGCCGGCAAGAATTCACTCGGACAACCGGATC  999
      ||| |||||||||||||||| ||||||||| |||||||||||  | ||||
seq2  TCG-CTGAGCTAGTATCTCG-CGGCAAGAA-TCACTCGGACA--CCGATC  987

seq1  CTTCTACGGCAAAGCTTTTATTGCTTCAACATAAGGAAGACCCCGAACCC  1049
      | ||||||   |||||||   ||||||||||||||| ||| |||||||| 
seq2  C-TCTACG--CAAGCTTT--ATGCTTCAACATAAGG-AGA-CCCGAACC-  1029

seq1  GGAAAATGGCGCTGCTTATATAGCT  1074
          ||||| ||||||||| |||||
seq2  ---GAATGGGGCTGCTTAT-TAGCT  1050