BAC Information

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BAC

Clone NameB6Ng01-031F23
Chromosome14 (Build37)
Map Location 17,246,135 - 17,383,266
singlet/doubletdoublet
Overlap geneTop2b, Rarb
Upstream geneLrrc3b, LOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1
Downstream geneTpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031F23.bB6Ng01-031F23.g
ACCDH861007DH861008
length1,0521,089
definitionDH861007|Mus musculus domesticus DNA, BAC clone: B6Ng01-031F23, 5' end.DH861008|Mus musculus domesticus DNA, BAC clone: B6Ng01-031F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,382,204 - 17,383,266)(17,246,135 - 17,247,242)
sequence
gaattcatttgaagattcctatgaattatgaaaatactataattatagtt
gattctgttccaaagggctaattacttttttaaggaagcaaatgagtata
agagtgcttttttatttcaaattttatcatgtaactacttagaagagcac
ttagtgtttaaaaagaagtgggggagggaaaagttcatgaattagttcac
tcagtatttattgatcatctactctataggaagacccagtcctggcacac
agctagaagtacagcatctagggttcctggcctcacaatactctaagtgt
ggggaacaattgtaaaatataaagttataaacaaaaaatcttttctaaag
tttggcaacagttaaaattttatagaaaataagatgaaataatatgaccc
aatgaacaggaataggaaggggcctttcttaagttttcttctatcccttg
gttttgtgttgggaattgaccccattctgtcatacatgctaagcacaagc
tctaccactgagccacactgccttccacagtgaggacactttcattacag
cagtcacctctgagagaatgacactcactctgagagataggtgatggata
acagccaatcctgatggtcttggtaggtgaggaaaatggctagtctgctt
atttgatcacctgtctggcacagatctgacaatgctcctagcccaggaga
gcacttgggatcaagcctgggtctcccctacaaggctgtagttacagaca
ctgctgtagaggtggtgtctcacattgctatgcaagcttatcttgttcaa
aagaagaattgaaagtgattatttagacctcatccaatgagggaatcatg
ggaggtgatctcttgctgaggggatgtcatgaaagcccacgtactgtcaa
agtatggtaggagtctgactcatcagtgattgttgagggctttcatggac
agatgacagatgtagtacaagagtggcaagtgtgggctcgggtagactga
gaaaaacacagcatccagccaactttccaatcaggcttcacaagtgagga
gc
gaattctttgatttacggttaagttattatggtttacggaaggaatggct
tgtaggaatgctgggagcagaatctacaaagcttaataatcaagcccgtt
tcattttagagaagatacaggggaaaattactataggtaaggcataacca
ttaaagatttgaacattagttaaaatggaaaaaaatctttattaatagaa
gacatttttttatcagtagaatataagcaaatacaaattgatctcttttc
ttgatcctaattttatttttccctcacatagagaataggtcaaagaaaga
tttgattcaaatgttagtccagagaggttatgaatctgacccagtgaaag
cgtggaaagaagcacaagaaaaggtaatcacctgcagaaagcagacactc
agagaagctctgaaaccaaacaatccccaccccaaagtctgaatttagaa
cggataaaggcgctaagctgtttggtgactgaaggcttctgctaacccac
agagcagacacagtttaggagttcacagtgcatacctaccacaaagcacc
catctccaccagggcttttagaaatggctccatgctgagaatgtggctca
gtgtccttgcaagagtctgccatgaagaggtggtttatgtaaagtacatg
catactctttgagagacagactggtggccctcaaaatcattccattgtcc
agtctgtgatgacagtgtggcatctgcttggtctagttgtgggtggggtc
cggagatgagagacaaacgtgctttgtcgtcactaacaccaagcatgtgc
tctgcctgtgttagacttttggtccgaaatttaaacactataattaagta
attaagtgtccatttagacatacttgtatttatccatgaatgaaatattg
aagcttagagtccctagagttatttctaagtatttgggatgataaaggca
atttaaaagcagtacaacctagagagaatggagactttttattaaagatt
gaggttaaaacagcataataaaattttgatactaaaatagattggtatca
cccacacacatatattgatagcagtgtaacattggttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_17382204_17383266
seq2: B6Ng01-031F23.b_44_1095 (reverse)

seq1  GCTCCTCCACTTGCTGAGCCTGATTGTGCATAGTTGGCTTGGCTGCTGTG  50
      |||||| ||||||   ||||||||  || | ||||||| ||| |||||||
seq2  GCTCCT-CACTTGTGAAGCCTGAT--TGGAAAGTTGGC-TGGATGCTGTG  46

seq1  GTCTTTTCCTCAGTCTACCCGAGCCCACACTTGCCACTCTTGTACTACAT  100
         |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ---TTTTTCTCAGTCTACCCGAGCCCACACTTGCCACTCTTGTACTACAT  93

seq1  CTGTCATCTGTCCATGAAAGCCCTCCAACAATCACTGATGAGGTCAGACT  150
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  CTGTCATCTGTCCATGAAAGCCCT-CAACAATCACTGATGA-GTCAGACT  141

seq1  CCTTACCATACTTTGACAGTACGTGGGCTTTCATGACATCCCCTCAGCAA  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CC-TACCATACTTTGACAGTACGTGGGCTTTCATGACATCCCCTCAGCAA  190

seq1  GAGATTCACCTCCCATGATTCCCTCATTGGATGAGGTCTAAATAATCACT  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGA-TCACCTCCCATGATTCCCTCATTGGATGAGGTCTAAATAATCACT  239

seq1  TTCAATTCTTCTTTTGAACAAGATAAGCTTGCATAGCAATGTGAGACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCTTCTTTTGAACAAGATAAGCTTGCATAGCAATGTGAGACACC  289

seq1  ACCTCTACAGCAGTGTCTGTAACTACAGCCTTGTAGGGGAGACCCAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTACAGCAGTGTCTGTAACTACAGCCTTGTAGGGGAGACCCAGGCT  339

seq1  TGATCCCAAGTGCTCTCCTGGGCTAGGAGCATTGTCAGATCTGTGCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCAAGTGCTCTCCTGGGCTAGGAGCATTGTCAGATCTGTGCCAGA  389

seq1  CAGGTGATCAAATAAGCAGACTAGCCATTTTCCTCACCTACCAAGACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGATCAAATAAGCAGACTAGCCATTTTCCTCACCTACCAAGACCAT  439

seq1  CAGGATTGGCTGTTATCCATCACCTATCTCTCAGAGTGAGTGTCATTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTGGCTGTTATCCATCACCTATCTCTCAGAGTGAGTGTCATTCTC  489

seq1  TCAGAGGTGACTGCTGTAATGAAAGTGTCCTCACTGTGGAAGGCAGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTGACTGCTGTAATGAAAGTGTCCTCACTGTGGAAGGCAGTGTG  539

seq1  GCTCAGTGGTAGAGCTTGTGCTTAGCATGTATGACAGAATGGGGTCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGGTAGAGCTTGTGCTTAGCATGTATGACAGAATGGGGTCAATT  589

seq1  CCCAACACAAAACCAAGGGATAGAAGAAAACTTAAGAAAGGCCCCTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACAAAACCAAGGGATAGAAGAAAACTTAAGAAAGGCCCCTTCCT  639

seq1  ATTCCTGTTCATTGGGTCATATTATTTCATCTTATTTTCTATAAAATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGTTCATTGGGTCATATTATTTCATCTTATTTTCTATAAAATTTT  689

seq1  AACTGTTGCCAAACTTTAGAAAAGATTTTTTGTTTATAACTTTATATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTGCCAAACTTTAGAAAAGATTTTTTGTTTATAACTTTATATTTT  739

seq1  ACAATTGTTCCCCACACTTAGAGTATTGTGAGGCCAGGAACCCTAGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGTTCCCCACACTTAGAGTATTGTGAGGCCAGGAACCCTAGATGC  789

seq1  TGTACTTCTAGCTGTGTGCCAGGACTGGGTCTTCCTATAGAGTAGATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCTAGCTGTGTGCCAGGACTGGGTCTTCCTATAGAGTAGATGAT  839

seq1  CAATAAATACTGAGTGAACTAATTCATGAACTTTTCCCTCCCCCACTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATACTGAGTGAACTAATTCATGAACTTTTCCCTCCCCCACTTCT  889

seq1  TTTTAAACACTAAGTGCTCTTCTAAGTAGTTACATGATAAAATTTGAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACACTAAGTGCTCTTCTAAGTAGTTACATGATAAAATTTGAAAT  939

seq1  AAAAAAGCACTCTTATACTCATTTGCTTCCTTAAAAAAGTAATTAGCCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCACTCTTATACTCATTTGCTTCCTTAAAAAAGTAATTAGCCCT  989

seq1  TTGGAACAGAATCAACTATAATTATAGTATTTTCATAATTCATAGGAATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACAGAATCAACTATAATTATAGTATTTTCATAATTCATAGGAATC  1039

seq1  TTCAAATGAATTC  1063
      |||||||||||||
seq2  TTCAAATGAATTC  1052

seq1: chr14_17246135_17247242
seq2: B6Ng01-031F23.g_67_1155

seq1  GAATTCTTTGATTTACGGTTAAGTTATTATGGTTTACGGAAGGAATGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGATTTACGGTTAAGTTATTATGGTTTACGGAAGGAATGGCT  50

seq1  TGTAGGAATGCTGGGAGCAGAATCTACAAAGCTTAATAATCAAGCCCGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAATGCTGGGAGCAGAATCTACAAAGCTTAATAATCAAGCCCGTT  100

seq1  TCATTTTAGAGAAGATACAGGGGAAAATTACTATAGGTAAGGCATAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAGAGAAGATACAGGGGAAAATTACTATAGGTAAGGCATAACCA  150

seq1  TTAAAGATTTGAACATTAGTTAAAATGGAAAAAAATCTTTATTAATAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATTTGAACATTAGTTAAAATGGAAAAAAATCTTTATTAATAGAA  200

seq1  GACATTTTTTTATCAGTAGAATATAAGCAAATACAAATTGATCTCTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTTTTATCAGTAGAATATAAGCAAATACAAATTGATCTCTTTTC  250

seq1  TTGATCCTAATTTTATTTTTCCCTCACATAGAGAATAGGTCAAAGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCTAATTTTATTTTTCCCTCACATAGAGAATAGGTCAAAGAAAGA  300

seq1  TTTGATTCAAATGTTAGTCCAGAGAGGTTATGAATCTGACCCAGTGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCAAATGTTAGTCCAGAGAGGTTATGAATCTGACCCAGTGAAAG  350

seq1  CGTGGAAAGAAGCACAAGAAAAGGTAATCACCTGCAGAAAGCAGACACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAAAGAAGCACAAGAAAAGGTAATCACCTGCAGAAAGCAGACACTC  400

seq1  AGAGAAGCTCTGAAACCAAACAATCCCCACCCCAAAGTCTGAATTTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCTCTGAAACCAAACAATCCCCACCCCAAAGTCTGAATTTAGAA  450

seq1  CGGATAAAGGCGCTAAGCTGTTTGGTGACTGAAGGCTTCTGCTAACCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATAAAGGCGCTAAGCTGTTTGGTGACTGAAGGCTTCTGCTAACCCAC  500

seq1  AGAGCAGACACAGTTTAGGAGTTCACAGTGCATACCTACCACAAAGCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGACACAGTTTAGGAGTTCACAGTGCATACCTACCACAAAGCACC  550

seq1  CATCTCCACCAGGGCTTTTAGAAATGGCTCCATGCTGAGAATGTGGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCACCAGGGCTTTTAGAAATGGCTCCATGCTGAGAATGTGGCTCA  600

seq1  GTGTCCTTGCAAGAGTCTGCCATGAAGAGGTGGTTTATGTAAAGTACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTGCAAGAGTCTGCCATGAAGAGGTGGTTTATGTAAAGTACATG  650

seq1  CATACTCTTTGAGAGACAGACTGGTGGCCCTCAAAATCATTCCATTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCTTTGAGAGACAGACTGGTGGCCCTCAAAATCATTCCATTGTCC  700

seq1  AGTCTGTGATGACAGTGTGGCATCTGCTTGGTCTAGTTGTGGGTGGGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTGATGACAGTGTGGCATCTGCTTGGTCTAGTTGTGGGTGGGGTC  750

seq1  CGGAAGATGAGAGACAAACGTGCTTTGTCGTCACTAACACCAAGCATGTG  800
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGG-AGATGAGAGACAAACGTGCTTTGTCGTCACTAACACCAAGCATGTG  799

seq1  CTCTGCCTGTGTTTAGACTTTTGGTCCGAAATTTAAACACTATAATTAAG  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTGTG-TTAGACTTTTGGTCCGAAATTTAAACACTATAATTAAG  848

seq1  TAATTAAGTTGTCCATTTTAGACAATACTTGTATTTATTCAATGAATGAA  900
      |||||||| |||||| ||||||| ||||||||||||| || |||||||||
seq2  TAATTAAG-TGTCCA-TTTAGAC-ATACTTGTATTTA-TCCATGAATGAA  894

seq1  ATATTGAAAGCTTAAGAGTTCCCTAGAGTTAATTTCTTAGTATTTGTGAT  950
      |||||| |||||| |||| ||||||||||| |||||| |||||||| |||
seq2  ATATTG-AAGCTT-AGAG-TCCCTAGAGTT-ATTTCTAAGTATTTGGGAT  940

seq1  GATAAAAAGGCAATTTTAAAAGGCAGTACAACATAGAG---ATTGAGAAC  997
      |||  |||||||||||  ||| |||||||||| |||||   || ||||  
seq2  GAT--AAAGGCAATTT--AAAAGCAGTACAACCTAGAGAGAATGGAGA--  984

seq1  TTTTTTATATAGAGATTGAGTTAAAAAACAGCAATAATTAATATTTTTAG  1047
       ||||||| || |||||||| |  |||||||| |||| ||| |||||  |
seq2  CTTTTTAT-TAAAGATTGAGGT-TAAAACAGC-ATAA-TAAAATTTT--G  1028

seq1  ATACTAAAATAGATTTGTAT-ACACACACACATATATATGATAGCAATGT  1096
      ||||||||||||||| |||| || ||||||||||||| |||||||| || 
seq2  ATACTAAAATAGATTGGTATCACCCACACACATATAT-TGATAGCAGTG-  1076

seq1  TAACATT-GTTTA  1108
      ||||||| |||||
seq2  TAACATTGGTTTA  1089