BAC Information

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BAC

Clone NameB6Ng01-031H18
ChromosomeY (Build37)14 (Build37)
Map Location 1,870,347 - 1,870,620111,502,840 - 111,503,998
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031H18.bB6Ng01-031H18.g
ACCDH861083DH861084
length9561,116
definitionDH861083|Mus musculus domesticus DNA, BAC clone: B6Ng01-031H18, 5' end.DH861084|Mus musculus domesticus DNA, BAC clone: B6Ng01-031H18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,347 - 1,870,620)(111,502,840 - 111,503,998)
sequence
gaattctttattattattattattacatattttcctcaatttcatttcca
atgctagcccaaaagtcccccatgcccttccccccattcccctacccacc
cattcccaatttttggccctggcgttcccctgtagtggggcatataaagt
ttgcgtgtccaatgagcctctctttccagtgatggccgactaggccatct
tttgataaatatgcagctagagtcaagagctccggggtactggttaattc
ataatgttgttgcacctacagggttgcagatctctttagctccttggata
ctttctctaactcttccattgtgggccctgtgttccatccattagctgac
tatgagcatccacttaggtgtttgctaggccccagcctagtctcacaaga
gacagctatatccgggtagtttcagcaaacgcttactagtgtatgcaatg
gtgtcatcgtttggaggctaattatgggatggatccctgtatatggcagt
ctctagatggtccatctttttgtcttagttcaaactttgtctctgtaact
ccttccatgggtgattgtttccaatactaagaaggggcaaagtgtccaca
gtttggtctttgttcctcttcaattttatgtgttttgcaaattgtatctt
atatctccggtatactaagtttctgggctaatatccacttatcagtgagt
acatatcatttgagttcttttgtgattatgttacctcactcaggatgatg
tcctccacatccatccctttgtctagaatttcataaattcattcctttta
atagatgagtagtactccattgtgtaaatgtaccacattttttgtatcca
ttcctctgttgaggggcatctgggttctttccagcttctggctattataa
attagctgctatgaacatagtggagcatgtgtccttcttactggttggga
catctt
gaattcagatccaggtctacagatgtaaaaagggagatgcaatgtacatt
attctgcaacctttttttaggcttttcacactttgagtttctatttagta
tcagatgaggatcagacaaataacaccagatgtgcataattgcttattgt
taactctagagggcagtgtaatctgaaaaagaatatatactgtcaaatat
acaaagaacatattatttgccaaatccttaaatataaagcattaaatgca
aatgatagctgtgctgatcctctaaaatgtgtctataggtctatctactg
taatagttaattaaaatagaaatatgagcttcattattaatagctggtat
taaatactaaagtgtcacaataacatattataagaaaattgtattgtagt
ccttattctattattattaatattaatattagtagtattctgcatgaggg
actgcacttagaaattagtgcatgctaaatgtacaagctattgagctatg
tccctaactcttagagataatttactgttagaacagtactaaactatctg
atatttaatgagatacacataggtgaaatatgcagttagaagggcaataa
gtaactataacaaggcatttaggcccaatattagtttaaaattagtcaca
attctttaaccaaatttcattttgcttactttcacatttcactataccat
catgttccagttaccatatttgtcataagtgttgctacaactctgtaaca
tctctgcttccttcatttcccattaactaaaaattataattgaattcatt
tcaataagaaaggtaagcaatgtttggtctttagggtttttttttttcaa
tttaaatgccaaagttagttatagttactaagcatggtcaatgcttgcaa
cctattctttgagaaatcatattcattgactgaagctgatagacacaggc
agctagcatgatattgattagtcatcacttacagggtggatccatcatgc
agcatgatacatttagacattgtattagaataggttcctaacgtcaaaga
gtcatatcggtctcatgagtcatttactggtgaaaaagagtgcattgaat
taaatttcttgtatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870347_1870620
seq2: B6Ng01-031H18.b_85_355 (reverse)

seq1  TAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAA  50
      ||||||||||| |||||||||||||| ||||||||||||| |||||| ||
seq2  TAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTGCAA  50

seq1  CAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCATA  100
      |||||||||||| |||||| |||||| |||||||||||||| ||||||||
seq2  CAACATTATGAATTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATA  100

seq1  GGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTG  150
        |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCTCATTG  150

seq1  GACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAA  200
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  GACACGCAAACTTTATATGCCCCACTACAGGGGAACGCCAGGGCCAAAAA  200

seq1  GGGGCAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGCTATGGGGGACTTT  250
        || | ||||||||||||||| |||||  ||  ||  ||||||||||||
seq2  TTGGGAATGGGTGGGTAGGGGAATGGGG--GGAAGGGCATGGGGGACTTT  248

seq1  TGGTATAGCATTGGAAATGTAAAT  274
      |||  |||||||||||||| ||||
seq2  TGGGCTAGCATTGGAAATG-AAAT  271

seq1: chr14_111502840_111503998
seq2: B6Ng01-031H18.g_67_1182

seq1  GAATTCAGATCCAGGTCTACAGATGTAAAAAGGGAGATGCAATGTACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCCAGGTCTACAGATGTAAAAAGGGAGATGCAATGTACATT  50

seq1  ATTCTGCAACCTTTTTTTAGGCTTTTCACACTTTGAGTTTCTATTTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCAACCTTTTTTTAGGCTTTTCACACTTTGAGTTTCTATTTAGTA  100

seq1  TCAGATGAGGATCAGACAAATAACACCAGATGTGCATAATTGCTTATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGAGGATCAGACAAATAACACCAGATGTGCATAATTGCTTATTGT  150

seq1  TAACTCTAGAGGGCAGTGTAATCTGAAAAAGAATATATACTGTCAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTAGAGGGCAGTGTAATCTGAAAAAGAATATATACTGTCAAATAT  200

seq1  ACAAAGAACATATTATTTGCCAAATCCTTAAATATAAAGCATTAAATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAACATATTATTTGCCAAATCCTTAAATATAAAGCATTAAATGCA  250

seq1  AATGATAGCTGTGCTGATCCTCTAAAATGTGTCTATAGGTCTATCTACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAGCTGTGCTGATCCTCTAAAATGTGTCTATAGGTCTATCTACTG  300

seq1  TAATAGTTAATTAAAATAGAAATATGAGCTTCATTATTAATAGCTGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTTAATTAAAATAGAAATATGAGCTTCATTATTAATAGCTGGTAT  350

seq1  TAAATACTAAAGTGTCACAATAACATATTATAAGAAAATTGTATTGTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACTAAAGTGTCACAATAACATATTATAAGAAAATTGTATTGTAGT  400

seq1  CCTTATTCTATTATTATTAATATTAATATTAGTAGTATTCTGCATGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTCTATTATTATTAATATTAATATTAGTAGTATTCTGCATGAGGG  450

seq1  ACTGCACTTAGAAATTAGTGCATGCTAAATGTACAAGCTATTGAGCTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACTTAGAAATTAGTGCATGCTAAATGTACAAGCTATTGAGCTATG  500

seq1  TCCCTAACTCTTAGAGATAATTTACTGTTAGAACAGTACTAAACTATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAACTCTTAGAGATAATTTACTGTTAGAACAGTACTAAACTATCTG  550

seq1  ATATTTAATGAGATACACATAGGTGAAATATGCAGTTAGAAGGGCAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAATGAGATACACATAGGTGAAATATGCAGTTAGAAGGGCAATAA  600

seq1  GTAACTATAACAAGGCATTTAGGCCCAATATTAGTTTAAAATTAGTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTATAACAAGGCATTTAGGCCCAATATTAGTTTAAAATTAGTCACA  650

seq1  ATTCTTTAACCAAATTTCATTTTGCTTACTTTCACATTTCACTATACCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTAACCAAATTTCATTTTGCTTACTTTCACATTTCACTATACCAT  700

seq1  CATGTTCCAGTTACCATATTTGTCATAAGTGTTGCTACAACTCTGTAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCCAGTTACCATATTTGTCATAAGTGTTGCTACAACTCTGTAACA  750

seq1  TCTCTGCTTCCTTCATTTCCCATTAACTAAAAATTATAATTGAATTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTCCTTCATTTCCCATTAACTAAAAATTATAATTGAATTCATT  800

seq1  TCAATAAGAAAGGTAAGCAATGTTTGGTCTTTAGGGTTTTTTTTTTTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAGAAAGGTAAGCAATGTTTGGTCTTTAGGGTTTTTTTTTTTCAA  850

seq1  TTTAAAATGCCAAAGTTAGTTATTAGTTACTAAGCATGGGTTCAAATGCT  900
      ||| |||||||||||||||||| ||||||||||||||||  || ||||||
seq2  TTT-AAATGCCAAAGTTAGTTA-TAGTTACTAAGCATGG--TC-AATGCT  895

seq1  TGCAACCTATTCTTTTGAGAAAATCATTAATTCATTGACTGAAGCTGATA  950
      |||||||||||| |||||| |||||||  |||||||||||||||||||||
seq2  TGCAACCTATTC-TTTGAG-AAATCAT--ATTCATTGACTGAAGCTGATA  941

seq1  GACACAGGCAAGCTAAGCATGAATATTGATTAGTCATCACCTTACAGGAG  1000
      ||||||||| |||| |||||| ||||||||||||||||| |||||||| |
seq2  GACACAGGC-AGCT-AGCATG-ATATTGATTAGTCATCA-CTTACAGG-G  986

seq1  TGATTCCATCAATGCAGCAATGGATAACCATTTAGACCATTTGTAATAGG  1050
      ||  |||||| ||||||||   ||||  |||||||||   ||||| ||| 
seq2  TGGATCCATC-ATGCAGCA--TGATA--CATTTAGAC--ATTGTATTAG-  1028

seq1  AAATTAGATTCTCTTAACGTCAAAAGAGTCCATATCGAGTTCTCCATGAG  1100
        | ||| |  || ||||||| ||||||| ||||||  | ||| ||||||
seq2  --AATAGGT--TCCTAACGTC-AAAGAGT-CATATC--GGTCT-CATGAG  1069

seq1  TCATTTACTTGGTGAGAAAGAAGAGTTTGCATTGAATTATAAAAATGTTC  1150
      |||||||| |||||| |||||      |||||||||||    |||| |||
seq2  TCATTTAC-TGGTGAAAAAGA-----GTGCATTGAATT----AAAT-TTC  1108

seq1  TTTGTATCT  1159
       ||||||||
seq2  -TTGTATCT  1116