BAC Information

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BAC

Clone NameB6Ng01-032C12
Chromosome3 (Build37)14 (Build37)
Map Location 41,058,840 - 41,059,35220,557,557 - 20,557,682
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032C12.bB6Ng01-032C12.g
ACCDH861573DH861574
length896126
definitionDH861573|Mus musculus domesticus DNA, BAC clone: B6Ng01-032C12, 5' end.DH861574|Mus musculus domesticus DNA, BAC clone: B6Ng01-032C12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,058,840 - 41,059,352)(20,557,557 - 20,557,682)
sequence
gaatttctttgtttagctctgtaccccatgtttaaaaggggttatttgaa
tttctggagtccagcttcttgagctctttgtatatattggatattagtcc
cctatcagatttaggattggtaaaaattctttcccaatctgttggtggcc
tttttctcttattgacagtatcttttgccctacagaagctttgcaatttt
atgaggtcccatttgttaatttttgatcttacaacacaggccattgctgt
tctgtttaggaatttttcccctgtgcccatatcttcgaggcttttcccca
ctttctcctctacaaatttcagtgtctctggttttatgtggagttctttg
atccacttagacttgagctttgtacaatgagataagaatggatcaattcg
cattcttctacattataatcaccagttgtgccagcaccatatgttgaaaa
tgcttttttccactggatggttttagctcccttgtcaaagatcaagtgac
cataggtgtgtgggttcatttctgggtcttcaattctattccattgatcg
acctgtctgtcattgtaccagtaccatgcagtttttatcacaattgctct
gtagcacagcttgaggtcaggcatggtgattcccccagaggttcttttat
tgttgagaatagtttttgctatcctaggtttttgttattccagataaatt
tgcaaattgccctttctaattcagtgaagaattgagttggaattttgatg
gggattgcattgaatttgtagattgctttcgacaggatagccatttgact
atattaatcctgccaatccatgagcatgggagatctttccatctttctga
gatcttcttcaattttcttgttcagagacttgaagttcttgtcata
cttgggtgcacttactataaacaaagggtccttggcacgaacagagaact
gaacagctgcagctgcaagagatttgcttagacaaccaaaacattaaata
ctcttgggggagagagggggaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058840_41059352
seq2: B6Ng01-032C12.b_425_932 (reverse)

seq1  TATGACAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAG  50
      |||||||||||||||||||||||||| ||  ||||| |||||||||||||
seq2  TATGACAAGAACTTCAAGTCTCTGAACAAGAAAATTGAAGAAGATCTCAG  50

seq1  -AAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTA  99
       ||||||||||||||||||||||||||||||||||||||| || || || 
seq2  AAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATTAATATAGT-  99

seq1  AAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCAT  149
       ||||||||||| || | ||||||||||||| ||||||||||||||||||
seq2  CAAATGGCTATCCTGTCGAAAGCAATCTACAAATTCAATGCAATCCCCAT  149

seq1  CAAAATTCCAACTCAATTCTTCAACGAATTTGAAAGAGCAATCTGCAAAT  199
      |||||||||||||||||||||||  ||||| ||||| ||||| |||||||
seq2  CAAAATTCCAACTCAATTCTTCACTGAATTAGAAAGGGCAATTTGCAAAT  199

seq1  TCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGAT  249
      | |||||||||||| ||||||||||||||||||||||| |||||||  ||
seq2  TTATCTGGAATAAC-AAAAACCTAGGATAGCAAAAACTATTCTCAACAAT  248

seq1  AACAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAG  299
      || ||||||||||| |||||||||||||||||||| ||||| | ||||||
seq2  AAAAGAACCTCTGGGGGAATCACCATGCCTGACCTCAAGCTGTGCTACAG  298

seq1  AGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAG  349
      ||||||||||||||||||||||||||||||||| | ||||||||| |  |
seq2  AGCAATTGTGATAAAAACTGCATGGTACTGGTACAATGACAGACAGGTCG  348

seq1  ACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGT  399
      | ||||||||||||||||||||| |||||| ||| |||||||||||||||
seq2  ATCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGT  398

seq1  CACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAG  449
      ||||||||||| ||||||||||||||||||||||||||||||||    ||
seq2  CACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAAAA----AG  444

seq1  CATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAA  499
      ||||||||||| ||||||||||||||||||||  |||| |||||||||||
seq2  CATTTTCAACATATGGTGCTGGCACAACTGGTGATTATAATGTAGAAGAA  494

seq1  TGCGAATTGATCCA  513
      ||||||||||||||
seq2  TGCGAATTGATCCA  508

seq1: chr14_20557557_20557682
seq2: B6Ng01-032C12.g_75_200

seq1  CTTGGGTGCACTTACTATAAACAAAGGGTCCTTGGCACGAACAGAGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTGCACTTACTATAAACAAAGGGTCCTTGGCACGAACAGAGAACT  50

seq1  GAACAGCTGCAGCTGCAAGAGATTTGCTTAGACAACCAAAACATTAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCTGCAGCTGCAAGAGATTTGCTTAGACAACCAAAACATTAAATA  100

seq1  CTCTTGGGGGAGAGAGGGGGAGGGGG  126
      ||||||||||||||||||||||||||
seq2  CTCTTGGGGGAGAGAGGGGGAGGGGG  126