BAC Information

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BAC

Clone NameB6Ng01-032H19
Chromosome14 (Build37)
Map Location 111,513,098 - 111,642,794
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032H19.bB6Ng01-032H19.g
ACCDH861810DH861811
length1,107328
definitionDH861810|Mus musculus domesticus DNA, BAC clone: B6Ng01-032H19, 5' end.DH861811|Mus musculus domesticus DNA, BAC clone: B6Ng01-032H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,641,682 - 111,642,794)(111,513,098 - 111,513,425)
sequence
gaattcaaggcccataacttacaggtttttgattgagactagaaaggcag
cccagttctggaaatgcaatccagtggcaggcaatggagtttgaaactgc
ccagggtccaattttaggagtcccaaatgaagacccagttgcacaattgg
gtctaagttctaagagttctacaattaaagaactatatttttctagcaaa
tttttcagttttcatgaagccattacattcatatataagttagacatgct
agaaaaaatttaaaggatcttaaacacattaaactgaatttaatattctt
acaaatgtttctgtattatctttttatacaaaatcatccttttactataa
attatcttctgaaaaataattcatgcatagaaagtaactaaatcatgttg
cctcttgattagactcacttctactttctccaggaactcacaggatatct
actttacaaagtcatactcaccaattaatgtttctcatatgataggaatt
tgaatttattcagtggtccaggttcatcttctctcctcttcttcctattt
ttctgccttgtcctcatccttgctttttctaatacccctcccccacattt
ttgtccttttgtcagaatttcaggttttctgtgttctagaccacctgtat
gcttacctactatgaagacaatctttgtttgccatgtaatttatttagag
gttttcccggaatgatcagtaaacacttgtaaactggcacatggccatga
gatttaagatgctatagaatcaccatattctgattaattatagagaaaga
ggtgcaaattgaaagttttatgaatgtatacaagggtgagtatttagcac
agaaattgtaaaacagacccacactaataactacaactatagctctaatt
cttcctcagcactttaaggaggtacaatagcagttagctctcttgattta
gcttgagttaatccatgagattcattctctgacagtgtgaagtacttgtt
tctttataaatatgtaccatagacccttcagtacattaacacatgtcctc
ttcatccattagctcacctgtgtgggattatcatttaagaatttttctta
gaaattt
acttcccaatagaaaagtagaaaaagaagaacaggagagagagagagaga
gagagagagagagagagagagagagggggagagagagagagagagagaga
gagagagagagagagagagagagagaggggacaagtttttttttaaaaaa
aaaaaaacaaataacaaatacattccactgtcaggtgctatgtctttcta
ctaaaaacagtactaaaccaccacaaacagtagctacttcatccatgtat
aacctaaaactgacaagactcctttaaacttctctgtaccctaacctgtg
ggctgtcttctgggtgtattcatagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111641682_111642794
seq2: B6Ng01-032H19.b_44_1150 (reverse)

seq1  AAATATCTAAGAAAAATATCTTAAAATGAATAATCTCACACAAGGTGAGC  50
      |||| |||||||||||| |||| ||||| |||||| ||||| ||||||||
seq2  AAATTTCTAAGAAAAAT-TCTT-AAATG-ATAATCCCACAC-AGGTGAGC  46

seq1  TAATGGATGAAGA-GACATGTGTTAATGTACTGAAGGGTCTATGGTACAT  99
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAATGGATGAAGAGGACATGTGTTAATGTACTGAAGGGTCTATGGTACAT  96

seq1  ATTTAATAAAGAAACAAGTACTTCACACTGTCAGAGAATGAATCTCATGG  149
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTT-ATAAAGAAACAAGTACTTCACACTGTCAGAGAATGAATCTCATGG  145

seq1  ATTAACTCAAGCTAAAATCAAGAGAGCTAACTGCTATTGTACCTCCTTAA  199
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCAAGCT-AAATCAAGAGAGCTAACTGCTATTGTACCTCCTTAA  194

seq1  AGTGCCTGAGGAAGAATTAGAGCTATAGTTGTAGTTATTAGTGTGGGTCT  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTG-CTGAGGAAGAATTAGAGCTATAGTTGTAGTTATTAGTGTGGGTCT  243

seq1  GTTTTACAATTTCTGTGCTAAATACTCACCCTTGTATACATTCATAAAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACAATTTCTGTGCTAAATACTCACCCTTGTATACATTCATAAAAC  293

seq1  TTTCAATTTGCACCTCTTTCTCTATAATTAATCAGAATATGGTGATTCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTTGCACCTCTTTCTCTATAATTAATCAGAATATGGTGATTCTA  343

seq1  TAGCATCTTAAATCTCATGGCCATGTGCCAGTTTACAAGTGTTTACTGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCTTAAATCTCATGGCCATGTGCCAGTTTACAAGTGTTTACTGAT  393

seq1  CATTCCGGGAAAACCTCTAAATAAATTACATGGCAAACAAAGATTGTCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCGGGAAAACCTCTAAATAAATTACATGGCAAACAAAGATTGTCTT  443

seq1  CATAGTAGGTAAGCATACAGGTGGTCTAGAACACAGAAAACCTGAAATTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAGGTAAGCATACAGGTGGTCTAGAACACAGAAAACCTGAAATTC  493

seq1  TGACAAAAGGACAAAAATGTGGGGGAGGGGTATTAGAAAAAGCAAGGATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAAGGACAAAAATGTGGGGGAGGGGTATTAGAAAAAGCAAGGATG  543

seq1  AGGACAAGGCAGAAAAATAGGAAGAAGAGGAGAGAAGATGAACCTGGACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAGGCAGAAAAATAGGAAGAAGAGGAGAGAAGATGAACCTGGACC  593

seq1  ACTGAATAAATTCAAATTCCTATCATATGAGAAACATTAATTGGTGAGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATAAATTCAAATTCCTATCATATGAGAAACATTAATTGGTGAGTA  643

seq1  TGACTTTGTAAAGTAGATATCCTGTGAGTTCCTGGAGAAAGTAGAAGTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGTAAAGTAGATATCCTGTGAGTTCCTGGAGAAAGTAGAAGTGA  693

seq1  GTCTAATCAAGAGGCAACATGATTTAGTTACTTTCTATGCATGAATTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATCAAGAGGCAACATGATTTAGTTACTTTCTATGCATGAATTATT  743

seq1  TTTCAGAAGATAATTTATAGTAAAAGGATGATTTTGTATAAAAAGATAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAGATAATTTATAGTAAAAGGATGATTTTGTATAAAAAGATAAT  793

seq1  ACAGAAACATTTGTAAGAATATTAAATTCAGTTTAATGTGTTTAAGATCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAACATTTGTAAGAATATTAAATTCAGTTTAATGTGTTTAAGATCC  843

seq1  TTTAAATTTTTTCTAGCATGTCTAACTTATATATGAATGTAATGGCTTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTTTTCTAGCATGTCTAACTTATATATGAATGTAATGGCTTCA  893

seq1  TGAAAACTGAAAAATTTGCTAGAAAAATATAGTTCTTTAATTGTAGAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTGAAAAATTTGCTAGAAAAATATAGTTCTTTAATTGTAGAACT  943

seq1  CTTAGAACTTAGACCCAATTGTGCAACTGGGTCTTCATTTGGGACTCCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAACTTAGACCCAATTGTGCAACTGGGTCTTCATTTGGGACTCCTA  993

seq1  AAATTGGACCCTGGGCAGTTTCAAACTCCATTGCCTGCCACTGGATTGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGACCCTGGGCAGTTTCAAACTCCATTGCCTGCCACTGGATTGCA  1043

seq1  TTTCCAGAACTGGGCTGCCTTTCTAGTCTCAATCAAAAACCTGTAAGTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAACTGGGCTGCCTTTCTAGTCTCAATCAAAAACCTGTAAGTTA  1093

seq1  TGGGCCTTGAATTC  1113
      ||||||||||||||
seq2  TGGGCCTTGAATTC  1107

seq1: chr14_111513098_111513425
seq2: B6Ng01-032H19.g_70_397

seq1  ACTTCCCAATAGAAAAGTAGAAAAAGAAGAACAGGAGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCAATAGAAAAGTAGAAAAAGAAGAACAGGAGAGAGAGAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGGGGGAGAGAGAGAGAGAGAGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGGGGGAGAGAGAGAGAGAGAGAGAGA  100

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGGGGACAAGTTTTTTTTTAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGGGGACAAGTTTTTTTTTAAAAAA  150

seq1  AAAAAAACAAATAACAAATACATTCCACTGTCAGGTGCTATGTCTTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAATAACAAATACATTCCACTGTCAGGTGCTATGTCTTTCTA  200

seq1  CTAAAAACAGTACAAAACCACCACAAACAGTAGCTACTTCATCCATGTAT  250
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTAAAAACAGTACTAAACCACCACAAACAGTAGCTACTTCATCCATGTAT  250

seq1  AACCTAAAACTGACAAGACTCCTTTAAACTTCTCTGTACCCTAACCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAAACTGACAAGACTCCTTTAAACTTCTCTGTACCCTAACCTGTG  300

seq1  GGCTGTCTTCAGGGTGTATTCATAGCTT  328
      |||||||||| |||||||||||||||||
seq2  GGCTGTCTTCTGGGTGTATTCATAGCTT  328