BAC Information

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BAC

Clone NameB6Ng01-032O11
Chromosome12 (Build37)14 (Build37)
Map Location 32,038,518 - 32,039,09660,805,999 - 60,806,306
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSntg2, Tmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld
Downstream geneLOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032O11.bB6Ng01-032O11.g
ACCDH862106DH862107
length907368
definitionDH862106|Mus musculus domesticus DNA, BAC clone: B6Ng01-032O11, 5' end.DH862107|Mus musculus domesticus DNA, BAC clone: B6Ng01-032O11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,038,518 - 32,039,096)(60,805,999 - 60,806,306)
sequence
gaattcacagcgacaatcgccgagtgaagctcattcatcttgccatcaaa
atttgcagtccaatttcttaataggaatttcttaacaggatcagcttctt
cattttgacactgtcgcactattcactctggaacccacactggctctgcg
tgattctgtggaaacatgcaaacagaccctctcgcccagcccaacacagg
atctggaccattccatgatcctgtaagcacatccctccatttagcatacc
ccagattactggggctggtattagcatgtcgttcagcagcagagcgacct
tccttatccaattgtaaacattttaaggtaaaaagagctaaggagagtct
tatttttgggggtatggccatagcctattccctgtctttgttttattaat
aattcttttaaggttctatgtgctcgttcaatgattccttggccttgagg
attatatggcagtccgtgtttaacttgtacttccatctgttgacaaaaag
acaccagggttttggcagtatatgcagggccattgtctgttttaagttgt
tggggtttaccccaagctgcccaggcctccaaacaatgctgtataacatg
ggaggccttttcccctgccatgggagatgcataaactattcctgaacatg
tgtcaatggatacatgaatgtatttgccaaattctgaaaaatgtgtcaca
tctatctgccacacctgtagagggagcaatcctctaggatgcactccata
agaaggtgggtgtgaaactcaaggcaacatacacaggtagtgactacatc
ccgagcttgtgctctagagattccaaattttctctgcagagttttagcat
aacatgaatttagaatgaaattgtaaggctaactccataggggtgctaaa
atatgaa
caggttcctgcaggcaagctgggagacacaggaggaagaaaaggtatttg
tcatgcatccagtgtagagagaaccatcagccatgtgagatcttgggtgg
agaggccattggccacttcccctattgggccttgagtagctggtgggaaa
taagaaacaactaagctgagggagggcagatttcaggtgctgagcaagga
gaaggtaactgggcaactaaagttgagggcaggtttattgttgagcaagg
agtaaagggaagggcacactagctgtgggaggcttggaagagcctagcca
ctgagccacaaggccggttaaaaatgagctaacgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32038518_32039096
seq2: B6Ng01-032O11.b_47_625

seq1  GAATTCACAGCGACAATCGCCGAGTGAAGCTCATTCATCTTGCCATCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCGACAATCGCCGAGTGAAGCTCATTCATCTTGCCATCAAA  50

seq1  ATTTGCAGTCCAATTTCTTAATAGGAATTTCTTAACAGGATCAGCTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAGTCCAATTTCTTAATAGGAATTTCTTAACAGGATCAGCTTCTT  100

seq1  CATTTTGACACTGTCGCACTATTCACTCTGGAACCCACACTGGCTCTGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGACACTGTCGCACTATTCACTCTGGAACCCACACTGGCTCTGCG  150

seq1  TGATTCTGTGGAAACATGCAAACAGACCCTCTCGCCCAGCCCAACACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGTGGAAACATGCAAACAGACCCTCTCGCCCAGCCCAACACAGG  200

seq1  ATCTGGACCATTCCATGATCCTGTAAGCACATCCCTCCATTTAGCATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGACCATTCCATGATCCTGTAAGCACATCCCTCCATTTAGCATACC  250

seq1  CCAGATTACTGGGGCTGGTATTAGCATGTCGTTCAGCAGCAGAGCGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTACTGGGGCTGGTATTAGCATGTCGTTCAGCAGCAGAGCGACCT  300

seq1  TCCTTATCCAATTGTAAACATTTTAAGGTAAAAAGAGCTAAGGAGAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATCCAATTGTAAACATTTTAAGGTAAAAAGAGCTAAGGAGAGTCT  350

seq1  TATTTTTGGGGGTATGGCCATAGCCTATTCCCTGTCTTTGTTTTATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGGGGGTATGGCCATAGCCTATTCCCTGTCTTTGTTTTATTAAT  400

seq1  AATTCTTTTAAGGTTCTATGTGCTCGTTCAATGATTCCTTGGCCTTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTTAAGGTTCTATGTGCTCGTTCAATGATTCCTTGGCCTTGAGG  450

seq1  ATTATATGGCAGTCCGTGTTTAACTTGTACTTCCATCTGTTGACAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATGGCAGTCCGTGTTTAACTTGTACTTCCATCTGTTGACAAAAAG  500

seq1  ACACCAGGGTTTTGGCAGTATATGCAGGGCCATTGTCTGTTTTAAGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGGTTTTGGCAGTATATGCAGGGCCATTGTCTGTTTTAAGTTGT  550

seq1  TGGGGTTTACCCCAAGCTGCCCAGGCCTC  579
      |||||||||||||||||||||||||||||
seq2  TGGGGTTTACCCCAAGCTGCCCAGGCCTC  579

seq1: chr14_60805999_60806306
seq2: B6Ng01-032O11.g_397_442 (reverse)

seq1  CGCACACACACACACACATATATACACACACACACACACACGCACACACA  50
        |||||||||||||||| | | ||||||||||||||    || ||    
seq2  --CACACACACACACACACACACACACACACACACACGTTAGCTCATT--  46

seq1  CGCACGCACGCACGCACGCACACACACATGCACCACACCCTGCTCCTCCT  100
                                                        
seq2  --------------------------------------------------  46

seq1  CTCTCAGCTTCACCAAAGGCCATGGAAATGAGATCAGCAGGAACCCCCCC  150
                                                        
seq2  --------------------------------------------------  46

seq1  CCCCCACACACACACACACAACTTGGCAAATGGGCTCCTCAGTGGTGAGA  200
                                                        
seq2  --------------------------------------------------  46

seq1  ATTTCTTAAATGGGCAAAATCTGGACGATATTTTGTGAAATTAGCACTGC  250
                                                        
seq2  --------------------------------------------------  46

seq1  ACAGTTGGTTTGCAGTCAGCACCATCATTTTCATGGGGTGAGAATATTTT  300
                                                        
seq2  --------------------------------------------------  46

seq1  AGCTCATT  308
              
seq2  --------  46