BAC Information

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BAC

Clone NameB6Ng01-033I18
Chromosome14 (Build37)
Map Location 52,578,517 - 52,733,190
singlet/doubletdoublet
Overlap geneE130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1
Upstream geneLOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13
Downstream geneSupt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033I18.bB6Ng01-033I18.g
ACCDH862564DH862565
length325950
definitionDH862564|Mus musculus domesticus DNA, BAC clone: B6Ng01-033I18, 5' end.DH862565|Mus musculus domesticus DNA, BAC clone: B6Ng01-033I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,732,866 - 52,733,190)(52,578,517 - 52,579,465)
sequence
acaggcaagctatctagcttacagagtcaagtcctgagccaataagtaac
cctgtctcaaagcaaaaggtggaaggtatcaaccacccagactggtcttt
gacctctagtatgtactccctcacatacagatgtgcacacaatatgcaca
catggaatcagaataaaatattaggaatatctaatgtgagagctagatag
acggctcagtggttaagagcactgactgctcttctagaggtcctgagttc
atttcccagcaaccacatagtggctcacaaccatctataatgggatctga
tgccctcttctggtgtgtctgaaga
gaattcagtctccagagcccaggtggaggtagggaaaaagaaattacaca
aagttgtcctcgggctttcacacacactatgaaatgtgtgtgctcacaca
catacacacatacacacacacatacactgtggaatgcacacacacacaca
cacacacacacacacacacacacacacacactcaccattcttttctgttt
atttcttgagcaactatccatgtagctagaaaatgcagtaaagaaacaca
taacatcctggccctctctctgtagggacctcacattgtgattctaggca
tcccgagagctgttaaagaacctgagatcagattctgggttcatcactct
ccctcagagccttggaggccaaagggggaaaaaacccagagaagaagcgc
aacaattctaatccactaggagtaagtggcacacaccagtaatcccagca
tttaggaggcaaatggagacagatttctgtgagttcagggccagcttgga
ctacagagaaagtttcgggacagccataactatatttgtgaaatcccatt
tcaacaaacaaacaaataaatgaacagtaactaaacaaagagagattatt
atggagtttaatctagacaatttaaaatatcctttgttctggtttctggt
gtcagcctagatctaatgttaagctgtctagttagccatgactgctccca
tcatttcaattgttcaaagagcttcagtgttacctcctcctgactcctgt
gccttactcatcccttacatctctgtcaccagttaaagtcttcctgtcct
ccctacacctagctgatatacagagggttactgatttaactgctatacca
atgaccccacccagcaggaagaagccagattccatcattgcttctgtttc
ctaaatggcagagatgtctcttagatagggaaactgataaggacatcagc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_52732866_52733190
seq2: B6Ng01-033I18.b_52_376 (reverse)

seq1  TCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTATAGATGGTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTATAGATGGTTGTG  50

seq1  AGCCACTATGTGGTTGCTGGGAAATGAACTCAGGACCTCTAGAAGAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTATGTGGTTGCTGGGAAATGAACTCAGGACCTCTAGAAGAGCAG  100

seq1  TCAGTGCTCTTAACCACTGAGCCGTCTATCTAGCTCTCACATTAGATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTCTTAACCACTGAGCCGTCTATCTAGCTCTCACATTAGATATT  150

seq1  CCTAATATTTTATTCTGATTCCATGTGTGCATATTGTGTGCACATCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATATTTTATTCTGATTCCATGTGTGCATATTGTGTGCACATCTGTA  200

seq1  TGTGAGGGAGTACATACTAGAGGTCAAAGACCAGTCTGGGTGGTTGATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGGAGTACATACTAGAGGTCAAAGACCAGTCTGGGTGGTTGATAC  250

seq1  CTTCCACCTTTTGCTTTGAGACAGGGTTACTTATTGGCTCAGGACTTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCTTTTGCTTTGAGACAGGGTTACTTATTGGCTCAGGACTTGAC  300

seq1  TCTGTAAGCTAGATAGCTTGCCTGT  325
      |||||||||||||||||||||||||
seq2  TCTGTAAGCTAGATAGCTTGCCTGT  325

seq1: chr14_52578517_52579465
seq2: B6Ng01-033I18.g_68_1017

seq1  GAATTCAGTCTCCAGAGCCCAGGTGGAGGTAGGGAAAAAGAAATTACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTCCAGAGCCCAGGTGGAGGTAGGGAAAAAGAAATTACACA  50

seq1  AAGTTGTCCTCGGGCTTTCACACACACTATGAAATGTGTGTGCTCACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTCCTCGGGCTTTCACACACACTATGAAATGTGTGTGCTCACACA  100

seq1  CATACACACATACACACACACATACACTGTGGAATG----CACACACACA  146
      ||||||||||||||||||||||||||||||||||||    ||||||||||
seq2  CATACACACATACACACACACATACACTGTGGAATGCACACACACACACA  150

seq1  CACACACACACACACACACACACACACACACTCACCATTCTTTTCTGTTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACTCACCATTCTTTTCTGTTT  200

seq1  ATTTCTTGAGCAACTATCCATGTAGCTAGAAAATGCAGTAAAGAAACACA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGAGCAACTATCCATGTAGCTAGAAAATGCAGTAAAGAAACACA  250

seq1  TAACATCCTGGCCCTCTCTCTGTAGGGACCTCACATTGTGATTCTAGGCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCCTGGCCCTCTCTCTGTAGGGACCTCACATTGTGATTCTAGGCA  300

seq1  TCCCGAGAGCTGTTAAAGAACCTGAGATCAGATTCTGGGTTCATCACTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGAGCTGTTAAAGAACCTGAGATCAGATTCTGGGTTCATCACTCT  350

seq1  CCCTCAGAGCCTTGGAGGCCAAAGGGGGAAAAAACCCAGAGAAGAAGCGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGAGCCTTGGAGGCCAAAGGGGGAAAAAACCCAGAGAAGAAGCGC  400

seq1  AACAATTCTAATCCACTAGGAGTAAGTGGCACACACCAGTAATCCCAGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTCTAATCCACTAGGAGTAAGTGGCACACACCAGTAATCCCAGCA  450

seq1  TTTAGGAGGCAAATGGAGACAGATTTCTGTGAGTTCAGGGCCAGCTTGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAGGCAAATGGAGACAGATTTCTGTGAGTTCAGGGCCAGCTTGGA  500

seq1  CTACAGAGAAAGTTTCGGGACAGCCATAACTATATTTGTGAAATCCCATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGAAAGTTTCGGGACAGCCATAACTATATTTGTGAAATCCCATT  550

seq1  TCAACAAACAAACAAATAAATGAACAGTAACTAAACAAAGAGAGATTATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAACAAACAAATAAATGAACAGTAACTAAACAAAGAGAGATTATT  600

seq1  ATGGAGTTTAATCTAGACAATTTAAAATATCCTTTGTTCTGGTTTCTGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTTTAATCTAGACAATTTAAAATATCCTTTGTTCTGGTTTCTGGT  650

seq1  GTCAGCCTAGATCTAATGTTAAGCTGTCTAGTTAGCCATGACTGCTCCCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCTAGATCTAATGTTAAGCTGTCTAGTTAGCCATGACTGCTCCCA  700

seq1  TCATTTCAATTGTTCAAAGAGCTTCAGTGTTACCTCCTCCTGACTCCTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCAATTGTTCAAAGAGCTTCAGTGTTACCTCCTCCTGACTCCTGT  750

seq1  GCCTTACTCATCCCTTACATCTCTGTCACCAGTTAAAGTCTTCCTGTCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACTCATCCCTTACATCTCTGTCACCAGTTAAAGTCTTCCTGTCCT  800

seq1  CCCTACACCTAGCTGATATACAGAGGGTTACTGATTTAACTGCTATACCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCCTACACCTAGCTGATATACAGAGGGTTACTGATTTAACTGCTATA-CC  849

seq1  AATGACCCCACCCAGCAGGAAGAAGCCAGATTCCATCATTGCTTCTGTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCCCACCCAGCAGGAAGAAGCCAGATTCCATCATTGCTTCTGTTT  899

seq1  CCTAAATGGCAGAGATGTCTCTTCAGATAAGGGAAACTGATAAGGACATC  946
      ||||||||||||||||||||||| |||| |||||||||||||||||||||
seq2  CCTAAATGGCAGAGATGTCTCTT-AGAT-AGGGAAACTGATAAGGACATC  947

seq1  AGC  949
      |||
seq2  AGC  950