BAC Information

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BAC

Clone NameB6Ng01-033N24
Chromosome14 (Build37)3 (Build37)
Map Location 112,222,218 - 112,223,10139,821,724 - 39,821,912
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG622052, LOC100043491, LOC100043494, Slitrk5
Downstream geneLOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033N24.bB6Ng01-033N24.g
ACCDH862804DH862805
length9811,041
definitionDH862804|Mus musculus domesticus DNA, BAC clone: B6Ng01-033N24, 5' end.DH862805|Mus musculus domesticus DNA, BAC clone: B6Ng01-033N24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(112,222,218 - 112,223,101)(39,821,724 - 39,821,912)
sequence
gaattctcccggatactttacaaaatgaaagacattaatgcaagttaaat
ggtttcttgtttgtttgctttatttttacttggagcactgcttgtgcact
acattattgtcatttttgaatacttgatgcattgttaagataagtaggtg
atgtataggaagttaccttgggtagttttctagaatgagatgtgagatca
aaatgtgagacctggccaatgttgtgaagtctggaatatatctactgtta
acaactttcacaataccaagatttaaaaaaaatatatttgtctgtttaaa
tagaagcaaatcaaacattgcatttatcaatatctgggtgaataaaaaaa
caggaaaagaaaaggaaactagaagtcctaaggactgcataaaactcaag
tccaagaaaacaaagacttcaacatcaatgcagatacactaaacatgata
gaagagaaagtggtgagtaaagttcaatgcattggcacaggagacaactt
cctgaaaagaacatcaacagtgcaggcactaagatcaatgattaataaat
gggtcctcatgaaactgagaatcttcagtagggcaaaggatactatcaat
aggacaaaatggtagtctatgtaatagaaaaatatattcaccaaatccac
aagttacacagggctaatttccaagaaatatagagaactcatgaaactca
atgtcaacaaatcaaataaccaaagtaaatatggagtacaagtctaaaca
gaaacttcacaaaagaggaatctcaaatggcctagaaacacttaaagcaa
tgtgcaacagccttagcaatcagggaaatgcaagtaagaatagctttgaa
tttcatcttgtacctcttagaatgaatgactaaaatcaaaaacactggta
atagctcctgctgagtagggtatagaacaaaggaacactcctttgcttgt
ggggagttcaaacttgtacaggcacatggaa
gaattccccaatcagcccagattaatgctatgccaaaagactttctctgc
aatcttgacagtggtgccccattgccaaggatgacatccacacaacccat
tgcagatagtgaagttgagctggtacctacatgggtcattcactcctatc
ttcctatgttcaaggttctttggtatggtaaggtacttggcaggctatct
aaagagaaaaatagacaccaacctaagcacaaaggttttgacctacaata
tgtcctacgtgaaaataagatagggcagcgatggcacaaaatttgtggga
gtagccgaacaatgtctgatatgacttaaggaccactcatgagaaagaag
tcatatccagccttgctgctgtagtcaggaaacagagactagatggccca
aagacctatggtaaaaccaaacatggctggtaaaattaattggctaatta
actagtaaacaaacaaacaaataaacaaataaataagtcctaatgatatt
ctgctacattcatagatgccatttatctagtcttatctaacttcatcaga
gaggctaattcttgcaacagatagaaacagatgcaggcacacacaacaag
atattatgtaaagagagagtctaaattgaggtctgtttcaaatccatcac
ctaagaacttaagaaattctgcagaagaggaggcagaaagatgataagaa
tctgagtggatagaggatcccaggagaatgtggtcctcagagttaactaa
gcaagacatatataaggtcacaaagactgaagcaataagcacagggtcaa
cactggtgtacacaaggtcttctgtgttcattttatagctattatctttg
tattttgggtagaatgctgatggttagtacaaggagagctctcttgtgtc
tgctttatctgtgactcttttgttcctgttgggtgctatttccaaattga
tatgaagcttttgcttcatttatttatttatttatttatttttaatgttt
agtttgaggtttctctagaaacccttttttttttaatttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112222218_112223101
seq2: B6Ng01-033N24.b_47_930

seq1  GAATTCTCCCGGATACTTTACAAAATGAAAGACATTAATGCAAGTTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCGGATACTTTACAAAATGAAAGACATTAATGCAAGTTAAAT  50

seq1  GGTTTCTTGTTTGTTTGCTTTATTTTTACTTGGAGCACTGCTTGTGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTGTTTGTTTGCTTTATTTTTACTTGGAGCACTGCTTGTGCACT  100

seq1  ACATTATTGTCATTTTTGAATACTTGATGCATTGTTAAGATAAGTAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTGTCATTTTTGAATACTTGATGCATTGTTAAGATAAGTAGGTG  150

seq1  ATGTATAGGAAGTTACCTTGGGTAGTTTTCTAGAATGAGATGTGAGATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAGGAAGTTACCTTGGGTAGTTTTCTAGAATGAGATGTGAGATCA  200

seq1  AAATGTGAGACCTGGCCAATGTTGTGAAGTCTGGAATATATCTACTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGAGACCTGGCCAATGTTGTGAAGTCTGGAATATATCTACTGTTA  250

seq1  ACAACTTTCACAATACCAAGATTTAAAAAAAATATATTTGTCTGTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTCACAATACCAAGATTTAAAAAAAATATATTTGTCTGTTTAAA  300

seq1  TAGAAGCAAATCAAACATTGCATTTATCAATATCTGGGTGAATAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCAAATCAAACATTGCATTTATCAATATCTGGGTGAATAAAAAAA  350

seq1  CAGGAAAAGAAAAGGAAACTAGAAGTCCTAAGGACTGCATAAAACTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAGAAAAGGAAACTAGAAGTCCTAAGGACTGCATAAAACTCAAG  400

seq1  TCCAAGAAAACAAAGACTTCAACATCAATGCAGATACACTAAACATGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAAAACAAAGACTTCAACATCAATGCAGATACACTAAACATGATA  450

seq1  GAAGAGAAAGTGGTGAGTAAAGTTCAATGCATTGGCACAGGAGACAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAAGTGGTGAGTAAAGTTCAATGCATTGGCACAGGAGACAACTT  500

seq1  CCTGAAAAGAACATCAACAGTGCAGGCACTAAGATCAATGATTAATAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAGAACATCAACAGTGCAGGCACTAAGATCAATGATTAATAAAT  550

seq1  GGGTCCTCATGAAACTGAGAATCTTCAGTAGGGCAAAGGATACTATCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTCATGAAACTGAGAATCTTCAGTAGGGCAAAGGATACTATCAAT  600

seq1  AGGACAAAATGGTAGTCTATGTAATAGAAAAATATATTCACCAAATCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAAATGGTAGTCTATGTAATAGAAAAATATATTCACCAAATCCAC  650

seq1  AAGTTACACAGGGCTAATTTCCAAGAAATATAGAGAACTCATGAAACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACACAGGGCTAATTTCCAAGAAATATAGAGAACTCATGAAACTCA  700

seq1  ATGTCAACAAATCAAATAACCAAAGTAAATATGGAGTACAAGTCTAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAACAAATCAAATAACCAAAGTAAATATGGAGTACAAGTCTAAACA  750

seq1  GAAACTTCACAAAAGAGGAATCTCAAATGGCCTAGAAACACTTAAAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCACAAAAGAGGAATCTCAAATGGCCTAGAAACACTTAAAGCAA  800

seq1  TGTGCAACAGCCTTAGCAATCAGGGAAATGCAAGTAAGAATAGCTTTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAACAGCCTTAGCAATCAGGGAAATGCAAGTAAGAATAGCTTTGAA  850

seq1  TTTCATCTTGTACCTCTTAGAATGAATGACTAAA  884
      ||||||||||||||||||||||||||||||||||
seq2  TTTCATCTTGTACCTCTTAGAATGAATGACTAAA  884

seq1: chr3_39821724_39821912
seq2: B6Ng01-033N24.g_1033_1106

seq1  ATTTATTTATTTATTTATTTATTTTGTGTGGGGGGGAGGGGGGTTCAAAA  50
      |||||||||||||||||||||||||   |             ||| |   
seq2  ATTTATTTATTTATTTATTTATTTTTAAT-------------GTTTAGTT  37

seq1  CAAGGTTTCTCTGTGTAGCCTTGGCAGTCCTGGAACTCACTTTGTAGATC  100
        ||||||||||    | ||||     |  |  |  |||           
seq2  TGAGGTTTCTCTAGAAACCCTT--TTTTTTTTAATTTCA-----------  74

seq1  AGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCCG  150
                                                        
seq2  --------------------------------------------------  74

seq1  TGTGCCACCACACCCAGCCTAATTTTTTTTTTAATTTCA  189
                                             
seq2  ---------------------------------------  74