BAC Information

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BAC

Clone NameB6Ng01-033O12
Chromosome14 (Build37)
Map Location 21,448,638 - 21,605,278
singlet/doubletdoublet
Overlap geneMyoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g
Upstream geneEG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54
Downstream genePlau, EG620119, Vcl, Ap3m1, Adk, Myst4, EG435391, Dusp13, Samd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033O12.bB6Ng01-033O12.g
ACCDH862826DH862827
length926715
definitionDH862826|Mus musculus domesticus DNA, BAC clone: B6Ng01-033O12, 5' end.DH862827|Mus musculus domesticus DNA, BAC clone: B6Ng01-033O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,448,638 - 21,449,566)(21,604,378 - 21,605,278)
sequence
gaattcactctgtagaccaggctggcctcgaactcagaaatccacctgcc
tctgcctcctgagtgctgggatcaaaggcgtgggccaccactgcccggct
tcagatgtttctaacctagaagcaaaaaatacatagggtctaatacttat
gtcaccttaataaattcctggaatgcaattgaaggtgttttcagcagccc
cagagcaggagcagctctgactaaccatggggagcgggcgggcgggatca
gtacacccgtggctcaccaattccaacttcccagacactgtgcacaccaa
ctactaccttcatccttcttgtgtgtttgcaatcttgactttttactttt
taggacaggaggagaacagttctgggaagtgaatttgaggcctcgcctat
gctaacaagcactttaacactgagatggcatccttagcatcttttacttt
ttatttacttttttaaatttacttttgttttgctttggttttttgttttt
ccagacagggtttatctatgaacctggctgtcctacagtcgctttgtaga
ccaggctgtccttgaactcacagagatccacctgtctctgcctactattt
atttacttatttttatattattattttcattatttttaaattctgtgtac
atgatgtgtgtgcatgtgagaatgtgctcctgggtactggtgtcctcaaa
gtcaaatccccctggagctggagttaaaggtggttatgagcagtccaaca
gaggtcctgtgaataaactcagccttctgcaagagcaggtaagttctcct
aaccacttcgccaactttctaagccccgacttttattttgagacagggtg
ctactacaacactcaggcccttcttgaattaactttgtaggccattcaga
tcttgaactttcagtctcctgaataa
gaattcaagaagagtccttgtagccataatatgaccatgtgtcctttcct
acctgcagaaggttgtatgtctgtgtgatatcagacctcttatctgaacc
tagtgctggcttctgtggttttagagaaatgttgctaaatcagtgtgtag
gtccttgggagagccatggagaatcagtggccagcactcttgaaacgaag
gcaaatatatttggagtaggcttcttttgggcaggagagaagaggcagtt
gtggggttctgtgtgccactagctgtacgagttgcagttgccttaccacc
tgataaccatctctgctccccttgctatatccggtcactccttgctgccc
tgcctgtgaaactgtggtgtcctagaccaagtcctgaagcacctgagcag
aaggctgaagaggcagtgtttccagttatccctgtttcctagggggcctg
gctctgccctaggttgacagctggggaaaagcccgagcaaggccaagaaa
gtggggacaggctcctaaaaaggctgcttctcctttctgatcctgatgtc
acctctgcagttaagggggaaaccttgcaagagggctgtctgtggttgga
gctatgctggaggcctgcagggtaggtctccatggcaataacacacaggc
aggcaggaaagtggctgttgtcaaacaggaagggggggctgggctgtggg
gtgggaggacctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_21448638_21449566
seq2: B6Ng01-033O12.b_45_970

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  50

seq1  TCTGCCTCCTGAGTGCTGGGATCAAAGGCGTGGGCCACCACTGCCCGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTGAGTGCTGGGATCAAAGGCGTGGGCCACCACTGCCCGGCT  100

seq1  TCAGATGTTTCTAACCTAGAAGCAAAAAATACATAGGGTCTAATACTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGTTTCTAACCTAGAAGCAAAAAATACATAGGGTCTAATACTTAT  150

seq1  GTCACCTTAATAAATTCCTGGAATGCAATTGAAGGTGTTTTCAGCAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTTAATAAATTCCTGGAATGCAATTGAAGGTGTTTTCAGCAGCCC  200

seq1  CAGAGCAGGAGCAGCTCTGACTAACCATGGGGAGCGGGCGGGCGGGATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGGAGCAGCTCTGACTAACCATGGGGAGCGGGCGGGCGGGATCA  250

seq1  GTACACCCGTGGCTCACCAATTCCAACTTCCCAGACACTGTGCACACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACCCGTGGCTCACCAATTCCAACTTCCCAGACACTGTGCACACCAA  300

seq1  CTACTACCTTCATCCTTCTTGTGTGTTTGCAATCTTGACTTTTTACTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACCTTCATCCTTCTTGTGTGTTTGCAATCTTGACTTTTTACTTTT  350

seq1  TAGGACAGGAGGAGAACAGTTCTGGGAAGTGAATTTGAGGCCTCGCCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGGAGGAGAACAGTTCTGGGAAGTGAATTTGAGGCCTCGCCTAT  400

seq1  GCTAACAAGCACTTTAACACTGAGATGGCATCCTTAGCATCTTTTACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACAAGCACTTTAACACTGAGATGGCATCCTTAGCATCTTTTACTTT  450

seq1  TTATTTACTTTTTTAAATTTACTTTTGTTTTGCTTTGGTTTTTTGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACTTTTTTAAATTTACTTTTGTTTTGCTTTGGTTTTTTGTTTTT  500

seq1  CCAGACAGGGTTTATCTATGAACCTGGCTGTCCTACAGTCGCTTTGTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAGGGTTTATCTATGAACCTGGCTGTCCTACAGTCGCTTTGTAGA  550

seq1  CCAGGCTGTCCTTGAACTCACAGAGATCCACCTGTCTCTGCCTACTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGTCCTTGAACTCACAGAGATCCACCTGTCTCTGCCTACTATTT  600

seq1  ATTTACTTATTTTTATATTATTATTTTCATTA-TTTTAAATTCTGTGTAC  649
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTTACTTATTTTTATATTATTATTTTCATTATTTTTAAATTCTGTGTAC  650

seq1  ATGATGTGTGTGCATGTGAGAATGTGCTCCTGGGTACTGGTGTCCTCAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTGTGTGCATGTGAGAATGTGCTCCTGGGTACTGGTGTCCTCAAA  700

seq1  GTCAAATCCCCCTGGAGCTGGAGTTAAAGGTGGTTATGAGCAGTCCAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATCCCCCTGGAGCTGGAGTTAAAGGTGGTTATGAGCAGTCCAACA  750

seq1  GAGGTCCTGGGAACAAAACTCAGGCCTTCTGCAAGAGCAGGTAAGTTCTC  799
      ||||||||| |||  ||||||| |||||||||||||||||||||||||||
seq2  GAGGTCCTGTGAA-TAAACTCA-GCCTTCTGCAAGAGCAGGTAAGTTCTC  798

seq1  TTAACCACTTCGCCAACTTTCTAAGCCCCGACTTTTAATTTTGAGACAGG  849
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTAACCACTTCGCCAACTTTCTAAGCCCCGACTTTT-ATTTTGAGACAGG  847

seq1  GTGCTACTACAACACCCAGGCCCTTCTTGAAATTAACTATGTAGGCCATT  899
      ||||||||||||||| ||||||||||||| |||||||| |||||||||||
seq2  GTGCTACTACAACACTCAGGCCCTTCTTG-AATTAACTTTGTAGGCCATT  896

seq1  CAGATCTTGAACTTTCAGTCTCCAGAATAA  929
      ||||||||||||||||||||||| ||||||
seq2  CAGATCTTGAACTTTCAGTCTCCTGAATAA  926

seq1: chr14_21604378_21605278
seq2: B6Ng01-033O12.g_67_781 (reverse)

seq1  AAAAGGAGTAAAGCTATTGAATTTTCTTGGTTTATGGTGGTGGGACCAGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCTAGGCTTGGCATATGAAGGTACGGACAAACCAGCAGGTACTCTTGCCA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAAAGCCAGCTTCCTTCCTTTCCTCAATGACTACTTCAGGGTAACTTGGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  CCTTCCCTAGCTGACCCACCTCTCACCCACCTTTCTGTAAGGCTCCTCCC  200
                                            || | |||||||
seq2  -------------------------------------AAAAGGTCCTCCC  13

seq1  ACCCCACAGCCCAGCCCCCCCTTCCTGTTTGACAACAGCCAC-TTCCTGC  249
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACCCCACAGCCCAGCCCCCCCTTCCTGTTTGACAACAGCCACTTTCCTGC  63

seq1  CTGCCTGTGTGCTATTGCCATGGAGACCTACCCTGCAGGCCTCCAGCCTA  299
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  CTGCCTGTGTGTTATTGCCATGGAGACCTACCCTGCAGGCCTCCAGCATA  113

seq1  GCTCCAACCACAGACAGCCCTCTTGCAAGGTTTCCCCCTTAACTGCAGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAACCACAGACAGCCCTCTTGCAAGGTTTCCCCCTTAACTGCAGAG  163

seq1  GTGACATCAGGATCAGAAAGGAGAAGCAGCCTTTTTAGGAGCCTGTCCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCAGGATCAGAAAGGAGAAGCAGCCTTTTTAGGAGCCTGTCCCC  213

seq1  ACTTTCTTGGCCTTGCTCGGGCTTTTCCCCAGCTGTCAACCTAGGGCAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTGGCCTTGCTCGGGCTTTTCCCCAGCTGTCAACCTAGGGCAGA  263

seq1  GCCAGGCCCCCTAGGAAACAGGGATAACTGGAAACACTGCCTCTTCAGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCCCCCTAGGAAACAGGGATAACTGGAAACACTGCCTCTTCAGCC  313

seq1  TTCTGCTCAGGTGCTTCAGGACTTGGTCTAGGACACCACAGTTTCACAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCAGGTGCTTCAGGACTTGGTCTAGGACACCACAGTTTCACAGG  363

seq1  CAGGGCAGCAAGGAGTGACCGGATATAGCAAGGGGAGCAGAGATGGTTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAGCAAGGAGTGACCGGATATAGCAAGGGGAGCAGAGATGGTTAT  413

seq1  CAGGTGGTAAGGCAACTGCAACTCGTACAGCTAGTGGCACACAGAACCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGTAAGGCAACTGCAACTCGTACAGCTAGTGGCACACAGAACCCC  463

seq1  ACAACTGCCTCTTCTCTCCTGCCCAAAAGAAGCCTACTCCAAATATATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGCCTCTTCTCTCCTGCCCAAAAGAAGCCTACTCCAAATATATTT  513

seq1  GCCTTCGTTTCAAGAGTGCTGGCCACTGATTCTCCATGGCTCTCCCAAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCGTTTCAAGAGTGCTGGCCACTGATTCTCCATGGCTCTCCCAAGG  563

seq1  ACCTACACACTGATTTAGCAACATTTCTCTAAAACCACAGAAGCCAGCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACACACTGATTTAGCAACATTTCTCTAAAACCACAGAAGCCAGCAC  613

seq1  TAGGTTCAGATAAGAGGTCTGATATCACACAGACATACAACCTTCTGCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCAGATAAGAGGTCTGATATCACACAGACATACAACCTTCTGCAG  663

seq1  GTAGGAAAGGACACATGGTCATATTATGGCTACAAGGACTCTTCTTGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAAGGACACATGGTCATATTATGGCTACAAGGACTCTTCTTGAAT  713

seq1  TC  901
      ||
seq2  TC  715