BAC Information

Click to search

BAC

Clone NameB6Ng01-033O14
Chromosome17 (Build37)14 (Build37)
Map Location 50,644,104 - 50,645,16074,559,624 - 74,560,006
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDaam2, Kif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream genePlcl2, EG654432, Tbc1d5, LOC100043451, LOC100043452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033O14.bB6Ng01-033O14.g
ACCDH862830DH862831
length1,051950
definitionDH862830|Mus musculus domesticus DNA, BAC clone: B6Ng01-033O14, 5' end.DH862831|Mus musculus domesticus DNA, BAC clone: B6Ng01-033O14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,644,104 - 50,645,160)(74,559,624 - 74,560,006)
sequence
gaattcattaaattttctcagtggctattgaattaggtagcactttaagg
tgatctattaattactggggattcaataccattattctattttaaaaagt
agcagtgtggtagactaataaaattcaccccaaagatacctgtttttacc
acactatgattttagttctctcttgcatgcttgagtgctttcatgtcatg
attttattacaggaatcattggccactgcaggcacaaatgtctgtgtggc
ctgtgagtaatgagagaacccaggtggacttatttaatggactgatagaa
tttatagttttcaatagtgatgcactttgtgtagaaattacagaggaatg
tcctgcctgatacatctgattttcataggtccttgacaccagaaacattc
cagcattctcctatctctgaggaagatgtacacatagagatgagtataac
tgtcattaagcagtgtggggcagcaatatcgtgtactgacggctcggatc
atctgggaaggaatcgtactgcttccatgaggaaatgctggcccacactg
acaatttcgttttatttttccagagaagccacaaatctagaatagaaaac
ttgctatttacacagttcatttcttacagacaccacaaaatgaaaaagat
tttgatgtgttgattgctattgttcttattagttattttcaaacaaggtc
tctctcactgtagcccaggctgacgtggaactaactaggtatctcaggct
agtctcaaactcttggtaatcctcctgggtgctgctggcctttttgatat
gagccaccatatctttataagatctatagaaaggcgtgttttctcctgtt
ctaccttgaatggcatgataagcaatagcttgggaaagtccttctaaagt
gcatttctttgtatcttgttgccatggttttaaggacatacttatgtcgt
ggatgttagtggtttaatagccatgtgcacatgttgctcccaacacgttc
tctttatctaccattctcatgcagtcagcctggaaaggtctcattctctg
a
gaattcaagaagatggactccagaaaaccaaataaccccattaaaagatc
aggcacagagctaaacaaaaaattctcaactgaggaatattgaatggctg
agaagtacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaa
atcaaaacaaccctgagattccacctcacaccagtcagaatggctaagat
caaaaattcaggtgacagcagatgctggtgaggatgtggagaaagaggaa
cactcctccattgtaggtgggattgcaagcttgtacaatgactctggaaa
tcagtctggcggttcctcagaaaattggaaatagtactaccagaggatcc
agcaatacctctcctgggcatatacccagaagatgttccaactggtaata
agaacacatgctccactatgttcatagcagccttttttttgtttttgttt
gtttgtttgttgttgttttttttcgagacagggtttctctgtgtaaccct
ggctgttctggaattcacttctgtagaccaggctggccttgaactcaaaa
atccgcctgcctctgcctcccaagtgctgggattaaaggtgtgagccacc
atggccggccatagcagccttatttaaaatagccagaagttggaaagaac
ccagatgtctctcaacaaaggaatggatacagaaaatgtggtacatttac
acaatggagtactactcagctattaaaagcaatgaatttatgaaattctt
aggcaaatggatggatctgcatatcatcctgagttaggtaacccaatcac
aaaagaagtcacttgatatgcactcactaataagttggatattagcccag
aaacctagaatacccaagatacattttgcaaaacaaatgaaactaaaaaa
aaaaaccaaaaaaaaaaaaacgaagtccaaagtggggacacttcgccctt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50644104_50645160
seq2: B6Ng01-033O14.b_47_1097 (reverse)

seq1  TCAGAG-ATGAGACCTTTCCAAGGCTGACTGCATGAGATGGGTAGATAAA  49
      |||||| ||||||||||||| |||||||||||||||||  ||||||||||
seq2  TCAGAGAATGAGACCTTTCC-AGGCTGACTGCATGAGAATGGTAGATAAA  49

seq1  GGGAAACGTGTTGGGAGCAACATGTTGCACATTGGCTATTTAACCACTAA  99
      | | |||||||||||||||||||| |||||| |||||||| |||||||||
seq2  GAG-AACGTGTTGGGAGCAACATG-TGCACA-TGGCTATTAAACCACTAA  96

seq1  CATCCACGACAATAAGTATGTCCTTAAAAACCATGGCAACAAGATACAAA  149
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  CATCCACGAC-ATAAGTATGTCCTT-AAAACCATGGCAACAAGATACAAA  144

seq1  GAAATGCAACTTTAGAAGGACTTTCCCAAGCTATTGCTTATCATGCCATT  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGC-ACTTTAGAAGGACTTTCCCAAGCTATTGCTTATCATGCCATT  193

seq1  CAAGGTAGAACAGGAGAAAACACGCCTTTCTATAGATCTTATAAAGATAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAGAACAGGAGAAAACACGCCTTTCTATAGATCTTATAAAGATAT  243

seq1  GGTGGCTCATATCAAAAAGGCCAGCAGCACCCAGGAGGATTACCAAGAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCATATCAAAAAGGCCAGCAGCACCCAGGAGGATTACCAAGAGT  293

seq1  TTGAGACTAGCCTGAGATACCTAGTTAGTTCCACGTCAGCCTGGGCTACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACTAGCCTGAGATACCTAGTTAGTTCCACGTCAGCCTGGGCTACA  343

seq1  GTGAGAGAGACCTTGTTTGAAAATAACTAATAAGAACAATAGCAATCAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAGACCTTGTTTGAAAATAACTAATAAGAACAATAGCAATCAAC  393

seq1  ACATCAAAATCTTTTTCATTTTGTGGTGTCTGTAAGAAATGAACTGTGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAAATCTTTTTCATTTTGTGGTGTCTGTAAGAAATGAACTGTGTA  443

seq1  AATAGCAAGTTTTCTATTCTAGATTTGTGGCTTCTCTGGAAAAATAAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAAGTTTTCTATTCTAGATTTGTGGCTTCTCTGGAAAAATAAAAC  493

seq1  GAAATTGTCAGTGTGGGCCAGCATTTCCTCATGGAAGCAGTACGATTCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGTCAGTGTGGGCCAGCATTTCCTCATGGAAGCAGTACGATTCCT  543

seq1  TCCCAGATGATCCGAGCCGTCAGTACACGATATTGCTGCCCCACACTGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGATGATCCGAGCCGTCAGTACACGATATTGCTGCCCCACACTGCT  593

seq1  TAATGACAGTTATACTCATCTCTATGTGTACATCTTCCTCAGAGATAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACAGTTATACTCATCTCTATGTGTACATCTTCCTCAGAGATAGGA  643

seq1  GAATGCTGGAATGTTTCTGGTGTCAAGGACCTATGAAAATCAGATGTATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTGGAATGTTTCTGGTGTCAAGGACCTATGAAAATCAGATGTATC  693

seq1  AGGCAGGACATTCCTCTGTAATTTCTACACAAAGTGCATCACTATTGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGACATTCCTCTGTAATTTCTACACAAAGTGCATCACTATTGAAA  743

seq1  ACTATAAATTCTATCAGTCCATTAAATAAGTCCACCTGGGTTCTCTCATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAATTCTATCAGTCCATTAAATAAGTCCACCTGGGTTCTCTCATT  793

seq1  ACTCACAGGCCACACAGACATTTGTGCCTGCAGTGGCCAATGATTCCTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGGCCACACAGACATTTGTGCCTGCAGTGGCCAATGATTCCTGT  843

seq1  AATAAAATCATGACATGAAAGCACTCAAGCATGCAAGAGAGAACTAAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATCATGACATGAAAGCACTCAAGCATGCAAGAGAGAACTAAAAT  893

seq1  CATAGTGTGGTAAAAACAGGTATCTTTGGGGTGAATTTTATTAGTCTACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGTGGTAAAAACAGGTATCTTTGGGGTGAATTTTATTAGTCTACC  943

seq1  ACACTGCTACTTTTTAAAATAGAATAATGGTATTGAATCCCCAGTAATTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCTACTTTTTAAAATAGAATAATGGTATTGAATCCCCAGTAATTA  993

seq1  ATAGATCACCTTAAAGTGCTACCTAATTCAATAGCCACTGAGAAAATTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCACCTTAAAGTGCTACCTAATTCAATAGCCACTGAGAAAATTTA  1043

seq1  ATGAATTC  1057
      ||||||||
seq2  ATGAATTC  1051

seq1: chr14_74559624_74560006
seq2: B6Ng01-033O14.g_69_452

seq1  GAATTCAAGAGGGTGAACTCCAGAAAATCAAATAACCCCATTAAAA-ATG  49
      |||||||||| | || ||||||||||| |||||||||||||||||| || 
seq2  GAATTCAAGAAGATGGACTCCAGAAAACCAAATAACCCCATTAAAAGATC  50

seq1  GGGCTCAGAGCTGAACAAAGAATTCTCACCTGAGGAATACCGAATGGCTG  99
       ||| ||||||| |||||| |||||||| ||||||||||  |||||||||
seq2  AGGCACAGAGCTAAACAAAAAATTCTCAACTGAGGAATATTGAATGGCTG  100

seq1  AGAAGCACCTGAAAAAATGCTCAGCATCCTTAATCATCAGGGAAATGCAA  149
      ||||| ||||||||||||| ||| ||||||||||||||||||||||||||
seq2  AGAAGTACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA  150

seq1  ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT  200

seq1  CAAGATTTCAGGTGACATCAGATGCTGGTGATGATGTGGAGAAAGAGGAA  249
      ||| | ||||||||||| ||||||||||||| ||||||||||||||||||
seq2  CAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAA  250

seq1  CACTCCTCCATTGTTGGTGGGAGTGCAAGCTTGTACAACCACTCTGGAAA  299
      |||||||||||||| ||||||| |||||||||||||||  ||||||||||
seq2  CACTCCTCCATTGTAGGTGGGATTGCAAGCTTGTACAATGACTCTGGAAA  300

seq1  TCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCC  349
      ||||||||| ||||||||||||||||||| ||||||||||| ||||||||
seq2  TCAGTCTGGCGGTTCCTCAGAAAATTGGAAATAGTACTACCAGAGGATCC  350

seq1  AGCAATACCTCTCCTGGGCATATATCCAGAAGAT  383
      |||||||||||||||||||||||| |||||||||
seq2  AGCAATACCTCTCCTGGGCATATACCCAGAAGAT  384