BAC Information

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BAC

Clone NameB6Ng01-034H09
Chromosome6 (Build37)14 (Build37)
Map Location 30,172,805 - 30,173,66592,104,077 - 92,104,179
singlet/doubletsingletsinglet
Overlap geneUbe2h
Upstream gene2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1
Downstream geneZc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034H09.bB6Ng01-034H09.g
ACCDH863210DH863211
length874246
definitionDH863210|Mus musculus domesticus DNA, BAC clone: B6Ng01-034H09, 5' end.DH863211|Mus musculus domesticus DNA, BAC clone: B6Ng01-034H09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,172,805 - 30,173,665)(92,104,077 - 92,104,179)
sequence
gaattccaggacagccagggtgatacagagaaaccctgtctcgaaaaacc
agaaaaatagaaaaaaaaaagatttatttattacatttatataagtacac
tgtagctgtcttcagacacaccagaagagggcatcaggttctaatacaga
tggttgtgagccaccatgtggttgctgggaactgaactcatgacctctgg
aagagcagtcagttctcttaacctctgagccatccctccagcccaaactt
cattatatctatatctagtagaagttaataccaatccattcttacaatcc
cagcattcaggagctaggggaacagaatattaaatattaagcaagtccta
taaaagttttcctttctctctccctcccctgccaaaatacgattttgata
agtaacccaggctggcctggaattcactaggtagctcaggttggcttttc
aaccttatgaatgctgggttgcttgtgatcctgggactttgggtagtgaa
gcaagactataagggaatgtcaagtttgtggcagcctgatctatgggaga
ccctgcatcacaaacaacaagtaatatacagtagaggggcttttgaaaat
tgtagaagttgggtatcttaaggaattattcatgggggcttggagagtga
gctcagtgggttaagaacttctggctgcttttccagagacccaaagttca
attcttagccacctattatgtgacttgcaagtcaagtgggatcctgttgc
tgctttcagcagctggggaccctgcccacgtggtaccaaacatacaggca
ggcataaaccactcccgaaaagcaaaaatgtttttacaggaaatttctct
attttgaaccagttaattgggggt
agttcttctgcaagaatagcaagtgctctcaactgctgaactatctcttc
agacccttttattttctagatatgactgtctgtctgtctgtctgactctc
tctctttctctctctctctctctctctctctctctctctacatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
catcgaacttgaccgcggccctgagagagagagggagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_30172805_30173665
seq2: B6Ng01-034H09.b_45_918 (reverse)

seq1  ACCCCCTATTAACTAGTTCAAAAT-GAGATAATTTCCTGTAAAAACATTT  49
      |||||| ||||||| ||||||||| |||| ||||||||||||||||||||
seq2  ACCCCCAATTAACTGGTTCAAAATAGAGA-AATTTCCTGTAAAAACATTT  49

seq1  TTGCTTTTCGTGAGTGTTTTATGCCTGCATGTATGTCT-GTACCACGTGT  98
      |||||||||| ||||| ||||||||||| ||||||| | |||||||||| 
seq2  TTGCTTTTCGGGAGTGGTTTATGCCTGCCTGTATGTTTGGTACCACGTGG  99

seq1  GCAGGGTCCACAGCTGCTGAAAGCAGCAACA-GATCCCACTTGAACTGC-  146
      ||||||||| ||||||||||||||||||||| ||||||||||||  ||| 
seq2  GCAGGGTCCCCAGCTGCTGAAAGCAGCAACAGGATCCCACTTGACTTGCA  149

seq1  AGTCACAT-ATAGGT-GCTAGGAATTGAACTTTGGGTCTCTGGAAAAGCA  194
      |||||||| |||||| |||| |||||||||||||||||||||||||||||
seq2  AGTCACATAATAGGTGGCTAAGAATTGAACTTTGGGTCTCTGGAAAAGCA  199

seq1  GCCAG-AGTTCTTAA-CCACTGAGCTCACTCTCCA--GCCCCATGAATAA  240
      ||||| ||||||||| |||||||||||||||||||   ||||||||||||
seq2  GCCAGAAGTTCTTAACCCACTGAGCTCACTCTCCAAGCCCCCATGAATAA  249

seq1  TTCCTTAAGATAACCAACTTCTACAATTTTCAAA--GCCCTCTACTGTAT  288
      |||||||||||| |||||||||||||||||||||   |||||||||||||
seq2  TTCCTTAAGATACCCAACTTCTACAATTTTCAAAAGCCCCTCTACTGTAT  299

seq1  ATTACTTGTTGTTTGTGATGCAGGGTCTCCCATAGATCAGGCTGCCACAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTGTTGTTTGTGATGCAGGGTCTCCCATAGATCAGGCTGCCACAA  349

seq1  ACTTGACATTCCCTTATAGTCTTGCTTCACTACCC-AAGTCCCAGGATCA  387
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTTGACATTCCCTTATAGTCTTGCTTCACTACCCAAAGTCCCAGGATCA  399

seq1  CAAGCAACCCAGCATTCATAAGGTTG-AAAGCCAACCTGAGCTACCTAGT  436
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAAGCAACCCAGCATTCATAAGGTTGAAAAGCCAACCTGAGCTACCTAGT  449

seq1  GAATTCCAGGCCAGCCTGGGTTACTTATCAAAATCGTATTTTGGCAGGGG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCTGGGTTACTTATCAAAATCGTATTTTGGCAGGGG  499

seq1  AGGGAGAGAGAAAGGAAAACTTTTATAGGACTTGCTTAATATTTAATATT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGAGAAAGGAAAACTTTTATAGGACTTGCTTAATATTTAATATT  549

seq1  CTGTTCCCCTAGCTCCTGAATGCTGGGATTGTAAGAATGGATTGGTATTA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCCCTAGCTCCTGAATGCTGGGATTGTAAGAATGGATTGGTATTA  599

seq1  ACTTCTACTAGATATAGATATAATGAAGTTTGGGCTGGAGGGATGGCTCA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTACTAGATATAGATATAATGAAGTTTGGGCTGGAGGGATGGCTCA  649

seq1  GAGGTTAAGAGAACTGACTGCTCTTCCAGAGGTCATGAGTTCAGTTCCCA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAAGAGAACTGACTGCTCTTCCAGAGGTCATGAGTTCAGTTCCCA  699

seq1  GCAACCACATGGTGGCTCACAACCATCTGTATTAGAACCTGATGCCCTCT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCACATGGTGGCTCACAACCATCTGTATTAGAACCTGATGCCCTCT  749

seq1  TCTGGTGTGTCTGAAGACAGCTACAGTGTACTTATATAAATGTAATAAAT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGTGTCTGAAGACAGCTACAGTGTACTTATATAAATGTAATAAAT  799

seq1  AAATCTTTTTTTTTTCTATTTTTCTGGTTTTTCGAGACAGGGTTTCTCTG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTTTTTTTCTATTTTTCTGGTTTTTCGAGACAGGGTTTCTCTG  849

seq1  TATCACCCTGGCTGTCCTGGAATTC  861
      |||||||||||||||||||||||||
seq2  TATCACCCTGGCTGTCCTGGAATTC  874

seq1: chr14_92104077_92104179
seq2: B6Ng01-034H09.g_232_324 (reverse)

seq1  TCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCACACTCTCTCTCAATATA  50
              |||| ||||||| ||||||||||||    | |  |||  |  
seq2  --------TCTCTCTCTCTCCCTCTCTCTCTCAGGGCCGCGGTCA--AGT  40

seq1  TATATGTATATATATATATATATATATATATATATATATATATATATATA  100
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATGTATATATATATATATATATATATATATATATATATATATATATA  90

seq1  TAT  103
      |||
seq2  TAT  93