BAC Information

Click to search

BAC

Clone NameB6Ng01-035H02
Chromosome14 (Build37)
Map Location 93,625,663 - 93,801,871
singlet/doubletdoublet
Overlap genePcdh9
Upstream geneLOC638252, LOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035H02.bB6Ng01-035H02.g
ACCDH863903DH863904
length683532
definitionDH863903|Mus musculus domesticus DNA, BAC clone: B6Ng01-035H02, 5' end.DH863904|Mus musculus domesticus DNA, BAC clone: B6Ng01-035H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,801,189 - 93,801,871)(93,625,663 - 93,626,199)
sequence
gaattctggcatctgcattccctatctgctttgatgtgggtggtggagat
ctgagctctagtcctcacacttttcctgtcaggggtttaagtaccaagcc
atctctccccctctctacttactattagcatatcattctgtagtttctgt
agaagtttttgaatgtctctaatggagtaatctcagggagagaaggcaga
gcgtgtctctcagaaccacactggtcatttatattagaacaaatagaatc
aaaatcaaaacaacaacaacaaaacctcgaaactttcacaacacttcaaa
gttgaaaaaataatttaaaataaaaaggactctgtgttaaaatttgatct
aatatttctttgaaagtgctactaataaaatagagattgaaaagtcaaaa
gaattctggaatgattgagaatgaaaaaaaatgctatcaagaaattggtg
tccagacaggttatatctcagtggtagaatgcttgcataacaaagacatt
tagtttaattaccagtaacacacacacacacacatacacacacacacaca
cactcacaaacacacacacacacacactgcacactcacagagagagagag
agagagagagagacagacagacagagagacagatagactgatagacagag
agaaacatagatgagagactgacttagacacag
aatccgtgagataattaatgtgaggaatttagacagtttttaacatgtca
aaagtgctcgggtggatgatgatgaagatggggatgatgtctgtgttgct
agtaaattatcactgttgtagtgatgctaataagttatttggtcatcata
aatggctgattttctgaaagaaaatgcattcgtgcggttgtggtaaagat
gatagactataattgaggataattttcatttgtgtcagatttaacttaat
atatacttccttaagtaaagtgtttgttggtaattttatgctcttttgta
gttaaaggtcttaaaccatttataatatttagtaacagattacaccttgc
cttctttcctaattaatcattagagaaacaggcaaagcaggtaattattc
caactatacacataaatgtgtcgatatattaaaatggcatatgtccaata
ataattcataatcatcaagagatattaatctatgacacatacaaactctt
agttatacataaatgattatttgttctagcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_93801189_93801871
seq2: B6Ng01-035H02.b_35_717 (reverse)

seq1  CTGTGTCTCTGTCTGTCTCTCTTCTCTGTTTCTCTCTGTCTCTCTGTCTC  50
      ||||||||  ||| ||||||| ||| ||||||||||||||| || |||| 
seq2  CTGTGTCTAAGTCAGTCTCTCATCTATGTTTCTCTCTGTCTATCAGTCTA  50

seq1  TCTGTCTCTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTGTGAG  100

seq1  TGTGCAGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGT  150
      ||||||||||||||||||||||||||||| |||||||||||||||||| |
seq2  TGTGCAGTGTGTGTGTGTGTGTGTTTGTGAGTGTGTGTGTGTGTGTGTAT  150

seq1  GTGTGTGTGTGTGTGTTACTGGTAATTAAACTAAATGTCTTTGTTATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTTACTGGTAATTAAACTAAATGTCTTTGTTATGCA  200

seq1  AGCATTCTACCACTGAGATATAACCTGTCTGGACACCAATTTCTTGATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTACCACTGAGATATAACCTGTCTGGACACCAATTTCTTGATAG  250

seq1  CATTTTTTTTCATTCTCAATCATTCCAGAATTCTTTTGACTTTTCAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTTCATTCTCAATCATTCCAGAATTCTTTTGACTTTTCAATCT  300

seq1  CTATTTTATTAGTAGCACTTTCAAAGAAATATTAGATCAAATTTTAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTATTAGTAGCACTTTCAAAGAAATATTAGATCAAATTTTAACAC  350

seq1  AGAGTCCTTTTTATTTTAAATTATTTTTTCAACTTTGAAGTGTTGTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCTTTTTATTTTAAATTATTTTTTCAACTTTGAAGTGTTGTGAAA  400

seq1  GTTTCGAGGTTTTGTTGTTGTTGTTTTGATTTTGATTCTATTTGTTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCGAGGTTTTGTTGTTGTTGTTTTGATTTTGATTCTATTTGTTCTAA  450

seq1  TATAAATGACCAGTGTGGTTCTGAGAGACACGCTCTGCCTTCTCTCCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGACCAGTGTGGTTCTGAGAGACACGCTCTGCCTTCTCTCCCTG  500

seq1  AGATTACTCCATTAGAGACATTCAAAAACTTCTACAGAAACTACAGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACTCCATTAGAGACATTCAAAAACTTCTACAGAAACTACAGAATG  550

seq1  ATATGCTAATAGTAAGTAGAGAGGGGGAGAGATGGCTTGGTACTTAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTAATAGTAAGTAGAGAGGGGGAGAGATGGCTTGGTACTTAAACC  600

seq1  CCTGACAGGAAAAGTGTGAGGACTAGAGCTCAGATCTCCACCACCCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAGGAAAAGTGTGAGGACTAGAGCTCAGATCTCCACCACCCACAT  650

seq1  CAAAGCAGATAGGGAATGCAGATGCCAGAATTC  683
      |||||||||||||||||||||||||||||||||
seq2  CAAAGCAGATAGGGAATGCAGATGCCAGAATTC  683

seq1: chr14_93625663_93626199
seq2: B6Ng01-035H02.g_69_606

seq1  GAATTCAAT-TGTGAGATAATTAATGTGAGGAATTTAGACAGTTTTTAAC  49
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCGTGAGATAATTAATGTGAGGAATTTAGACAGTTTTTAAC  50

seq1  ATGTCAAAAGTGCTCGGGTGGATGATGATGAAGATGGGGATGATGTCTGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAAAGTGCTCGGGTGGATGATGATGAAGATGGGGATGATGTCTGT  100

seq1  GTTGCTAGTAAATTATCACTGTTGTAGTGATGCTAATAAGTTATTTGGTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAGTAAATTATCACTGTTGTAGTGATGCTAATAAGTTATTTGGTC  150

seq1  ATCATAAATGGCTGATTTTCTGAAAGAAAATGCATTCGTGCGGTTGTGGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAATGGCTGATTTTCTGAAAGAAAATGCATTCGTGCGGTTGTGGT  200

seq1  AAAGATGATAGACTATAATTGAGGATAATTTTCATTTGTGTCAGATTTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGATAGACTATAATTGAGGATAATTTTCATTTGTGTCAGATTTAA  250

seq1  CTTAATATATACTTCCTTAAGTAAAGTGTTTGTTGGTAATTTTATGCTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATATATACTTCCTTAAGTAAAGTGTTTGTTGGTAATTTTATGCTCT  300

seq1  TTTGTAGTTAAAGGTCTTAAACCATTTATAATATTTAGTAACAGATTACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGTTAAAGGTCTTAAACCATTTATAATATTTAGTAACAGATTACA  350

seq1  CCTTGCCTTCTTTCCTAATTAATCATTAGAGAAACAGGCAAAGCAGGTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTTCTTTCCTAATTAATCATTAGAGAAACAGGCAAAGCAGGTAA  400

seq1  TTATTCCAACTATACACATAAATGTGTCGATATATTAAAATGGCATATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCAACTATACACATAAATGTGTCGATATATTAAAATGGCATATGT  450

seq1  CCAATAATAATTCATAATCATCAAGAGATATTAATCTATGACACATACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAATAATTCATAATCATCAAGAGATATTAATCTATGACACATACAA  500

seq1  ACTCTTAGTTATACATAAATGATTATTTGTTCTAGCAC  537
      ||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAGTTATACATAAATGATTATTTGTTCTAGCAC  538