BAC Information

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BAC

Clone NameB6Ng01-035H16
Chromosome14 (Build37)
Map Location 116,845,907 - 116,955,658
singlet/doubletdoublet
Overlap geneGpc5
Upstream genenone
Downstream geneGpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035H16.bB6Ng01-035H16.g
ACCDH863931DH863932
length1,005988
definitionDH863931|Mus musculus domesticus DNA, BAC clone: B6Ng01-035H16, 5' end.DH863932|Mus musculus domesticus DNA, BAC clone: B6Ng01-035H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,845,907 - 116,846,930)(116,954,654 - 116,955,658)
sequence
gaattctcaacataatgaaatatatccttttgttgtaaaaggtgacaagt
tcctacacatgtaagaaatatgtcaccttgttgaacattattaacatgtg
tgcatcactttaggtggattaattttacctcaatataatttctgaataca
gaaaaatcttctgaaacacttacataatcaagaaagattctactaatatg
taagagatcctttttatattttagtccctttttgaagtcccattttccac
gttacaaataaatctctcagataacagcctatttacttcactcgaaaacc
tttctttagtcagaactaatacttctgataagtaataactaagttgtgtc
ctataaatcatgcaatacacacattaacactcaaatgcataaataaaaat
atttttaaatgtatatagcatagaaattgtcaccatcttaagtataccga
taattgtcattaataatattcatgacaataatatcaatttttgtaatttc
acgactccgtttctagatattttaattatcttaagaaggaattctgtagt
ggttaagagatatgctcatgtatcctctatgtttttaaaattttattgta
atctttttaaaatttaatttgtaaatcactttttacagtccatattccat
ttcctgcccctctccatccatcctcctactgctctatatcccacacctcc
tccccaccccaccccatccccacgtggatgcccccacctctcacccctcc
tgacctctaaactctctggggcctccagtctctgagggttaggtgcataa
tctctgaatgacacagacctggaagtcctctactgtatgtgtgttggggg
cctcatatcagctggtgtatgccctatagtttcaaatcgcaaatcatctt
ggaggcatttttctatagattacatttcttgtgaaattttaatagattgt
ttctatagtctctgctttgatcagtatcacatacaagtagcttctttcat
aaaaa
gaattctttaaatattactaatatgtttgtctcctccccattgcccactg
gtaatattttttgtaatattgatggataattaattgtagactgctaaact
gtacatggaaaagaatttggttaaagtgtgtttgtgtttattattaatac
tagagtgcttttgggtggtgagatatcaagtagggattttgaacatataa
atgttaagtgaaactgtttcatcttaagtagctgatagaatggttgggtg
tatgctttttgcaacgatgagagatgggcactcaatcaaaccgctagtat
tcactaagccttgtgacttgaagactcctggaagtttgaggacattctat
atgatcatatagcttcagaattcctgggaaaagggaataaaagacacagc
ctgtgtgtccgtgtaaatgtcctcacgaattataatgttactggatttcc
acaaccagtttttctttggaatttgaaaatctgtgccttatattccttct
atagttttattctagggtctatctgggccaagaaacctaatttgccattt
tggaaattaacttttacatataaagaaaccaaaataatattcatgaacag
ttcttttaaagtattaggtacctgctatggacatagctactaaagtgttt
cctctcacccttctctctaccaagaaacattttcaaaagttaacaaatct
ttttcctggaaatgtatgaaacagttgttatgaaccagtttcatttcttc
caggttttcttgctgtacagactgggaagaccacattttctctgggttca
aagggacaagctgttagtacaaccatgtttctgcaggtcattggctactg
tgtaccttgtgacatcattgcaaatgcatctgccaaatgagtccacgagg
aacctagtaagcatagcatctgatagtgctatcagtcagcagatgtctag
ctctagtgactgctcagactcaacaggttcagcagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_116845907_116846930
seq2: B6Ng01-035H16.b_45_1049

seq1  GAATTCTCAACATAATGAAATATATCCTTTTGTTGTAAAAGGTGACAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACATAATGAAATATATCCTTTTGTTGTAAAAGGTGACAAGT  50

seq1  TCCTACACATGTAAGAAATATGTCACCTTGTTGAACATTATTAACATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACACATGTAAGAAATATGTCACCTTGTTGAACATTATTAACATGTG  100

seq1  TGCATCACTTTAGGTGGATTAATTTTACCTCAATATAATTTCTGAATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCACTTTAGGTGGATTAATTTTACCTCAATATAATTTCTGAATACA  150

seq1  GAAAAATCTTCTGAAACACTTACATAATCAAGAAAGATTCTACTAATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATCTTCTGAAACACTTACATAATCAAGAAAGATTCTACTAATATG  200

seq1  TAAGAGATCCTTTTTATATTTTAGTCCCTTTTTGAAGTCCCATTTTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGATCCTTTTTATATTTTAGTCCCTTTTTGAAGTCCCATTTTCCAC  250

seq1  GTTACAAATAAATCTCTCAGATAACAGCCTATTTACTTCACTCGAAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAATAAATCTCTCAGATAACAGCCTATTTACTTCACTCGAAAACC  300

seq1  TTTCTTTAGTCAGAACTAATACTTCTGATAAGTAATAACTAAGTTGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAGTCAGAACTAATACTTCTGATAAGTAATAACTAAGTTGTGTC  350

seq1  CTATAAATCATGCAATACACACATTAACACTCAAATGCATAAATAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATCATGCAATACACACATTAACACTCAAATGCATAAATAAAAAT  400

seq1  ATTTTTAAATGTATATAGCATAGAAATTGTCACCATCTTAAGTATACCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAATGTATATAGCATAGAAATTGTCACCATCTTAAGTATACCGA  450

seq1  TAATTGTCATTAATAATATTCATGACAATAATATCAATTTTTGTAATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCATTAATAATATTCATGACAATAATATCAATTTTTGTAATTTC  500

seq1  ACGACTCCGTTTCTAGATATTTTAATTATCTTAAGAAGGAATTCTGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACTCCGTTTCTAGATATTTTAATTATCTTAAGAAGGAATTCTGTAGT  550

seq1  GGTTAAGAGATATGCTCATGTATCCTCTATGTTTTTAAAATTTTATTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGAGATATGCTCATGTATCCTCTATGTTTTTAAAATTTTATTGTA  600

seq1  ATCTTTTTAAAATTTAATTTGTAAATCACTTTTTACAGTCCATATTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTAAAATTTAATTTGTAAATCACTTTTTACAGTCCATATTCCAT  650

seq1  TTCCTGCCCCTCTCCATCCATCCTCCTACTGCTCTATATCCCACACCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCCCTCTCCATCCATCCTCCTACTGCTCTATATCCCACACCTCC  700

seq1  TCCCCACCCCACCCCATCCCCACGTGGATGCCCCCACCTCTCACCCCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCCCACCCCATCCCCACGTGGATGCCCCCACCTCTCACCCCTCC  750

seq1  TGACCTCTAAACTCTCTGGGGCCTCCAGTCTCTTGAGGGTTAGGTGCATA  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGACCTCTAAACTCTCTGGGGCCTCCAGTCTC-TGAGGGTTAGGTGCATA  799

seq1  ATCTCTGAATGAACACAGACCTGGAAGTCCTCTACTGTATGTGTGTTGGG  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAATG-ACACAGACCTGGAAGTCCTCTACTGTATGTGTGTTGGG  848

seq1  GGCCTCATATCAGCTGGTGTATGCCCTATAGTTTCAAATTCGCAAATCAT  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGCCTCATATCAGCTGGTGTATGCCCTATAGTTTCAAA-TCGCAAATCAT  897

seq1  CTTGGAGGCATTTTTCTAATAGATTACATTTCTTGTGAAATTTTAAATAG  950
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  CTTGGAGGCATTTTTCT-ATAGATTACATTTCTTGTGAAATTTT-AATAG  945

seq1  AATTGTTTTCTTAATAGTCTCTGCCTTTTGGAATCCAGTATCAACATACA  1000
       |||| |||||  |||||||||||  ||||  || ||||||| |||||||
seq2  -ATTG-TTTCT--ATAGTCTCTGC--TTTG--AT-CAGTATC-ACATACA  985

seq1  AAGTTAGCTTTCTTTTCATAAAAA  1024
      |   ||||||   |||||||||||
seq2  A--GTAGCTT--CTTTCATAAAAA  1005

seq1: chr14_116954654_116955658
seq2: B6Ng01-035H16.g_68_1055 (reverse)

seq1  TTTCTGCTGGACCCCTGTTTGAGTCTGAGCAGGTCACTAGAGGCTTAGAA  50
      ||||||||| |  |||| ||||||||||||| ||||||||||   ||| |
seq2  TTTCTGCTGAA--CCTG-TTGAGTCTGAGCA-GTCACTAGAG--CTAG-A  43

seq1  CATCCTGCTGACTGGATAAGGCACCTATCAGATGCTTATGGCTTAACTAG  100
      ||| ||||||||| ||||  ||| ||||||||||| ||| |||| |||||
seq2  CAT-CTGCTGACT-GATA--GCA-CTATCAGATGC-TAT-GCTT-ACTAG  85

seq1  GTTCCTCGTGGACTTCATTTGGCAGATGCCATTCTGCAATGATGTCACAA  150
      ||||||||||||| |||||||||||||| |||| ||||||||||||||||
seq2  GTTCCTCGTGGAC-TCATTTGGCAGATG-CATT-TGCAATGATGTCACAA  132

seq1  GGTACACAGTAGCCAATGACCTGCAGAAACATGGTTGTACTAACAGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGTACACAGTAGCCAATGACCTGCAGAAACATGGTTGTACTAACAGC-TT  181

seq1  GTCCCTTTGAACCCAGAG-AAATGTGGTCTTCCCAGTCTGTACAGCAAGA  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTCCCTTTGAACCCAGAGAAAATGTGGTCTTCCCAGTCTGTACAGCAAGA  231

seq1  AAACCTGGAAGAAATGAAACTGGTTCATAACAACTGTTTCATACATTTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGGAAGAAATGAAACTGGTTCATAACAACTGTTTCATACATTTCC  281

seq1  AGGAAAAAGATTTGTTAACTTTTGAAAATGTTTCTTGGTAGAGAGAAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAGATTTGTTAACTTTTGAAAATGTTTCTTGGTAGAGAGAAGGG  331

seq1  TGAGAGGAAACAC-TTAGTAGCTATGTCCATAGCAGGTACCTAATACTTT  398
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGAAACACTTTAGTAGCTATGTCCATAGCAGGTACCTAATACTTT  381

seq1  AAAAGAACTGTTCATGAATATTATTTTGGTTTCTTTATATGTAAAAGTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACTGTTCATGAATATTATTTTGGTTTCTTTATATGTAAAAGTTA  431

seq1  ATTTCCAAAATGGCAAATTAGGTTTCTTGGCCCAGATAGACCCTAGAATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAAATGGCAAATTAGGTTTCTTGGCCCAGATAGACCCTAGAATA  481

seq1  AAACTATAGAAGGAATATAAGGCACAGATTTTCAAATTCCAAAGAAAAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATAGAAGGAATATAAGGCACAGATTTTCAAATTCCAAAGAAAAAC  531

seq1  TGGTTGTGGAAATCCAGTAACATTATAATTCGTGAGGACATTTACACGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGGAAATCCAGTAACATTATAATTCGTGAGGACATTTACACGGA  581

seq1  CACACAGGCTGTGTCTTTTATTCCCTTTTCCCAGGAATTCTGAAGCTATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGCTGTGTCTTTTATTCCCTTTTCCCAGGAATTCTGAAGCTATA  631

seq1  TGATCATATAGAATGTCCTCAAACTTCCAGGAGTCTTCAAGTCACAAGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATATAGAATGTCCTCAAACTTCCAGGAGTCTTCAAGTCACAAGGC  681

seq1  TTAGTGAATACTAGCGGTTTGATTGAGTGCCCATCTCTCATCGTTGCAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAATACTAGCGGTTTGATTGAGTGCCCATCTCTCATCGTTGCAAA  731

seq1  AAGCATACACCCAACCATTCTATCAGCTACTTAAGATGAAACAGTTTCAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATACACCCAACCATTCTATCAGCTACTTAAGATGAAACAGTTTCAC  781

seq1  TTAACATTTATATGTTCAAAATCCCTACTTGATATCTCACCACCCAAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTTATATGTTCAAAATCCCTACTTGATATCTCACCACCCAAAAG  831

seq1  CACTCTAGTATTAATAATAAACACAAACACACTTTAACCAAATTCTTTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAGTATTAATAATAAACACAAACACACTTTAACCAAATTCTTTTC  881

seq1  CATGTACAGTTTAGCAGTCTACAATTAATTATCCATCAATATTACAAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACAGTTTAGCAGTCTACAATTAATTATCCATCAATATTACAAAAA  931

seq1  ATATTACCAGTGGGCAATGGGGAGGAGACAAACATATTAGTAATATTTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACCAGTGGGCAATGGGGAGGAGACAAACATATTAGTAATATTTAA  981

seq1  AGAATTC  1005
      |||||||
seq2  AGAATTC  988