BAC Information

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BAC

Clone NameB6Ng01-035M14
Chromosome14 (Build37)
Map Location 18,266,230 - 18,310,716
singlet/doubletdoublet
Overlap genenone
Upstream geneRarb, Tpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035M14.bB6Ng01-035M14.g
ACCDH864161DH864162
length865859
definitionDH864161|Mus musculus domesticus DNA, BAC clone: B6Ng01-035M14, 5' end.DH864162|Mus musculus domesticus DNA, BAC clone: B6Ng01-035M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,309,847 - 18,310,716)(18,266,230 - 18,267,091)
sequence
gaattcaattagcatttatttttaaatctaagttttataaataaaagaaa
acatatgttacttttattttctctagcaacttccaagttatttataaata
aatgggtcttcaatgttactttactgaattatttctactgcagcagaaag
ctgtccattggacaggtcaccgttcaatagtacacttacagtttgtgctt
ttattaatcttgggtatagtgcatctttatgggaaggttggtcaggctgc
ttgctaaacatgcaaggcaattattattgttaatgaatcattgattttca
tagtagctattgttttaggacttaactaattaactaaacaagccccacag
ccttctaaacaaaagtttacttgatgaacttttatatgcacagcagaagg
gcacctgcagcgacctattagcaccaggaaactttaccttgtccttggag
aaaaggaatgtttgacatgttcaatgggtcagacactagctgttcaggtc
ttagtatctaccatcttaatatccaatacatgtcccttccagaagttaaa
atttatgtcttaatgtggaaacacatttctagttatgtatttttcaaagt
atgttttcttttcaattaaagtccatgtgtgtagaggttcgagacagtgg
ctttctatgggagctgggagttagggcagaatcactggataatgggttag
aattgcagacctatgaaagaaggcattgaatcaatttcccatagagaacc
tgtggccagtggaaaaacacctctgggtttcctcctaattttgcaatcct
ggtttgaagcctatgtgcagcaaactgagctgtgtaaaccttggctataa
caaagtttacatggc
gaattcaactgaaatcttgatggaaaatgtttgtttgccatataaattaa
acagtaatttttagaaaatattaacaactgagcagattactacataactt
taatcacagaatgtgtggagatgaggcaggaggattgctgcgagcctgat
gtcagcctacagaccaatgccagatcagtcagagggagacagaaagcgtt
tcagaaaaacctttaaagtatccttaaactatatcctttgttaaattggt
atcgtgtgtgtgtgtgtgtgtgtgtgtgtgttcctgaactgatttcccaa
cttagctttccagatagtctctcactaattctgaaacataccggttgctt
agactgccttgccatcaaaccccagaatctcccttattccctctgctgtc
cccctaacccagaaagccctggggtcacaaaggcattccatgtcccatac
ctagttctcaaataggatgttggggctccatactcagtctttatgctaac
acagagagcactttcagtagttactctccagctcaaattggtgtgacttt
tgaaaatacttaatggttagcagatgttcactgggaaaagaaaatgcatt
tggtagtattgcaagtaaaaagatcaaaagtcagtacttgctgagcaggg
tcaacagttgttcttcaaatagaaatagcttgtaccagatcaagctcaca
ttgaaaacatgacttcatccatctggccactcattgtttactaagtcctt
tgatttggtaacttttttttttctttgctaagctcagagaattttactga
gggtcttagctcagctttgatagatgtctggggatagtgggggtcttcct
tgatgtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_18309847_18310716
seq2: B6Ng01-035M14.b_47_911 (reverse)

seq1  GCCATGTAAACTTTGTTATAGCCCAAGGTTTACACAGCTCAGCTCTGCTG  50
      ||||||||||||||||||||| |||||||||||||||||||| | |||||
seq2  GCCATGTAAACTTTGTTATAG-CCAAGGTTTACACAGCTCAG-TTTGCTG  48

seq1  CACATAGGGCTCAAACCAGGATGTGCAAAATGAGAGGGAAACCAAGGAGG  100
      ||||||||  |||||||||||| |||||||| ||  ||||||| | ||||
seq2  CACATAGGCTTCAAACCAGGAT-TGCAAAATTAGGAGGAAACCCA-GAGG  96

seq1  TGCTCTCTTCCACTGGCCACAGGTTCTCTATGGGAAATTGATTCAATGCC  150
      ||   | |||||||||||||||||||||||||||||||||||||||||||
seq2  TG--TTTTTCCACTGGCCACAGGTTCTCTATGGGAAATTGATTCAATGCC  144

seq1  TTCTTTCATAGGTCTGCAATTCTAACCCATTATCCAGTGATTCTGCCCTT  200
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTCTTTCATAGGTCTGCAATTCTAACCCATTATCCAGTGATTCTGCCC-T  193

seq1  AACT-CCAGCT-CCATAGAAAGCCACTGTCTCGGACCTCTACACACATGG  248
      |||| |||||| ||||||||||||||||||||| ||||||||||||||||
seq2  AACTCCCAGCTCCCATAGAAAGCCACTGTCTCGAACCTCTACACACATGG  243

seq1  AC-TTAATTGAAAAGAAAACATACTTTGAAAAATACATAACTAGAAATGT  297
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAATTGAAAAGAAAACATACTTTGAAAAATACATAACTAGAAATGT  293

seq1  GTTTCCACATTAAGACATAAATTTTAACTTCTGGAAGGGACATGTATTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCACATTAAGACATAAATTTTAACTTCTGGAAGGGACATGTATTGG  343

seq1  ATATTAAGATGGTAGATACTAAGACCTGAACAGCTAGTGTCTGACCCATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGATGGTAGATACTAAGACCTGAACAGCTAGTGTCTGACCCATT  393

seq1  GAACATGTCAAACATTCCTTTTCTCCAAGGACAAGGTAAAGTTTCCTGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGTCAAACATTCCTTTTCTCCAAGGACAAGGTAAAGTTTCCTGGT  443

seq1  GCTAATAGGTCGCTGCAGGTGCCCTTCTGCTGTGCATATAAAAGTTCATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATAGGTCGCTGCAGGTGCCCTTCTGCTGTGCATATAAAAGTTCATC  493

seq1  AAGTAAACTTTTGTTTAGAAGGCTGTGGGGCTTGTTTAGTTAATTAGTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAACTTTTGTTTAGAAGGCTGTGGGGCTTGTTTAGTTAATTAGTTA  543

seq1  AGTCCTAAAACAATAGCTACTATGAAAATCAATGATTCATTAACAATAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAAAACAATAGCTACTATGAAAATCAATGATTCATTAACAATAAT  593

seq1  AATTGCCTTGCATGTTTAGCAAGCAGCCTGACCAACCTTCCCATAAAGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCTTGCATGTTTAGCAAGCAGCCTGACCAACCTTCCCATAAAGAT  643

seq1  GCACTATACCCAAGATTAATAAAAGCACAAACTGTAAGTGTACTATTGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATACCCAAGATTAATAAAAGCACAAACTGTAAGTGTACTATTGAA  693

seq1  CGGTGACCTGTCCAATGGACAGCTTTCTGCTGCAGTAGAAATAATTCAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGACCTGTCCAATGGACAGCTTTCTGCTGCAGTAGAAATAATTCAGT  743

seq1  AAAGTAACATTGAAGACCCATTTATTTATAAATAACTTGGAAGTTGCTAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAACATTGAAGACCCATTTATTTATAAATAACTTGGAAGTTGCTAG  793

seq1  AGAAAATAAAAGTAACATATGTTTTCTTTTATTTATAAAACTTGGGATTT  847
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  AGAAAATAAAAGTAACATATGTTTTCTTTTATTTATAAAACTT-AGATTT  842

seq1  AAAAATAAATGCTAATTGAATTC  870
      |||||||||||||||||||||||
seq2  AAAAATAAATGCTAATTGAATTC  865

seq1: chr14_18266230_18267091
seq2: B6Ng01-035M14.g_69_927

seq1  GAATTCAACTGAAATCTTGATGGAAAATGTTTGTTTGCCATATAAATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGAAATCTTGATGGAAAATGTTTGTTTGCCATATAAATTAA  50

seq1  ACAGTAATTTTTAGAAAATATTAACAACTGAGCAGATTACTACATAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATTTTTAGAAAATATTAACAACTGAGCAGATTACTACATAACTT  100

seq1  TAATCACAGAATGTGTGGAGATGAGGCAGGAGGATTGCTGCGAGCCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACAGAATGTGTGGAGATGAGGCAGGAGGATTGCTGCGAGCCTGAT  150

seq1  GTCAGCCTACAGACCAATGCCAGATCAGTCAGAGGGAGACAGAAAGCGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCTACAGACCAATGCCAGATCAGTCAGAGGGAGACAGAAAGCGTT  200

seq1  TCAGAAAAACCTTTAAAGTATCCTTAAACTATATCCTTTGTTAAATTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAACCTTTAAAGTATCCTTAAACTATATCCTTTGTTAAATTGGT  250

seq1  ATCGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCCTGAACTGATTTCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCCTGAACTGATTTCCCAA  300

seq1  CTTAGCTTTCCAGATAGTCTCTCACTAATTCTGAAACATACCGGTTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTTTCCAGATAGTCTCTCACTAATTCTGAAACATACCGGTTGCTT  350

seq1  AGACTGCCTTGCCATCAAACCCCAGAATCTCCCTTATTCCCTCTGCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCCTTGCCATCAAACCCCAGAATCTCCCTTATTCCCTCTGCTGTC  400

seq1  CCCCTAACCCAGAAAGCCCTGGGGTCACAAAGGCATTCCATGTCCCATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAACCCAGAAAGCCCTGGGGTCACAAAGGCATTCCATGTCCCATAC  450

seq1  CTAGTTCTCAAATAGGATGTTGGGGCTCCATACTCAGTCTTTATGCTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTCAAATAGGATGTTGGGGCTCCATACTCAGTCTTTATGCTAAC  500

seq1  ACAGAGAGCACTTTCAGTAGTTACTCTCCAGCTCAAATTGGTGTGACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGCACTTTCAGTAGTTACTCTCCAGCTCAAATTGGTGTGACTTT  550

seq1  TGAAAATACTTAATGGTTAGCAGATGTTCACTGGGAAAAGAAAATGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATACTTAATGGTTAGCAGATGTTCACTGGGAAAAGAAAATGCATT  600

seq1  TGGTAGTATTGCAAGTAAAAAGATCAAAAGCCAGTACCTGCTGAGCAGGG  650
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  TGGTAGTATTGCAAGTAAAAAGATCAAAAGTCAGTACTTGCTGAGCAGGG  650

seq1  TCAACAGTTGTTCTTCAAATAGAAATAGCTTGGTACCAGATCAAGCTCAC  700
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  TCAACAGTTGTTCTTCAAATAGAAATAGCTT-GTACCAGATCAAGCTCA-  698

seq1  CATTGAAAACATGAC-TCATCCATCTGGCCACTCATTGTTTACTAAGGTC  749
      ||||||||||||||| |||||||||||||||||||||||||||||||  |
seq2  CATTGAAAACATGACTTCATCCATCTGGCCACTCATTGTTTACTAAGTCC  748

seq1  TTTGATTTGGTAAC-TCTTATTTTCTATGCTAAGCTCAGAGAATTTTACC  798
      |||||||||||||| | || |||||| ||||||||||||||||||||| |
seq2  TTTGATTTGGTAACTTTTTTTTTTCTTTGCTAAGCTCAGAGAATTTTA-C  797

seq1  TGAGGGTC-TAGCTCCAGC-TTGATAGATGTCCTGGGGATTAGTGGGGGT  846
      |||||||| ||||| |||| ||||||||||| ||||||| ||||||||||
seq2  TGAGGGTCTTAGCT-CAGCTTTGATAGATGT-CTGGGGA-TAGTGGGGGT  844

seq1  CTTCTCATGATGTGGA  862
      |||| | |||||||||
seq2  CTTC-CTTGATGTGGA  859