BAC Information

Click to search

BAC

Clone NameB6Ng01-036C02
Chromosome14 (Build37)
Map Location 26,321,850 - 26,520,790
singlet/doubletdoublet
Overlap geneZmiz1, 4931406H21Rik, Ppif
Upstream geneLOC669315, LOC100039411, I920194n01, LOC100039007
Downstream gene2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036C02.bB6Ng01-036C02.g
ACCDH864403DH864404
length976841
definitionDH864403|Mus musculus domesticus DNA, BAC clone: B6Ng01-036C02, 5' end.DH864404|Mus musculus domesticus DNA, BAC clone: B6Ng01-036C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,321,850 - 26,322,823)(26,519,969 - 26,520,790)
sequence
gaattccaagaccctgagcctcttctaagaggagctacagcccccagttt
ccatggagctcctcttgggcacctggctttattccccagaaggtagtctg
agggaccctggcaggcatggtcctgtgcacagtcaagtctcttgactgtg
agagggatattttcccctgctagtctacagataaagaaactgagaccttt
ctgagggcacactagaggtcagctaggggacttggggttttcctgcagtc
ctgaactcagagctcattttcctctctgctttttcttgcaggactcagac
agcatagaatctactcagcatctccttcgccacagcctcccttccccaac
atcacattagccttgagttgtgatcgactggcaggagccctagcaggtga
gtggatgggccagctatattggtactgggaatcggccactgagggctggg
caggtatctgtggccacctgaagtaggagatctggctggaggagctgggt
ggggaaatgtctcattcccaatttctgttttgttcctgagctctgaagcc
ggagaggagagggcatggacctagcctcgttgttgggagtgtggtttatt
taccatcagtaccctgtataggcttgttaggtctctccatcctgctgatg
gattttgccttctagtttagttcacagagattaataacagtagtcatagc
tcctgtgagtacctgactgtacactggtaccatttccctccatactgccc
ttgaggggtggctgtcaccataccagtgtacagatgagagactgagcctt
gtaccttgttccgaggcacatgctgtcaaaacctgggttcaaggcagtct
gtgcacccccgaatcctctcctggttccccatctggggcttcctttttat
ggtttgggccgagtctcctcagtgtataatccagtgcaaatggagagttt
ctacaatgtgacaagcttgctgggtg
gaattctatatggcatgaatgcaatactcaccgcagccagagcccacatc
ccttctccatgagctatgctatgtccctacccacctaaggaaactcttag
tcatgtgcttgccccagtcctgtcttccctgagaattcagcaatgaagaa
ttccacatttcagtgacccagcatgagaaaagggaaacccacctctaacc
tttggtgatctcagccccctttcctaaggatctctgacacacgggaaatg
tcaccctcttgtaagtcactacccagagattgctgtgatgatacatctgg
cccaagaccatgcacctcacatgggtcacacccaattccagacctagatg
tcatgtacacattatgtagctgagagaaactgaagctcaatcactaagca
tagctgggacttcacctagaggtagtgctcacggtggggactgtctggac
catcctacaggacagatggtagcaagggatgttctcagtggctttctgag
ctagtactttggggtttaggacacagaatgtttctacacggatttcctta
caataaggctgaggacgtgggctttgtgtgcacaaaggccctagcatcat
aaaacaacaaatacaaacaaaaatacagttcaaagcttagaacctaacac
ataagtaacttccaagactggccccagctggagtcaaatgttccatgcct
gtaatcccaacagcattgaggaaggtcagagtgtttgagctagccaaggg
ctattacagcaagactctggacacacgtaagaccttgtccaaaaacaaaa
tgagccccaaaaatgtaatttcattccaaaccgagagcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_26321850_26322823
seq2: B6Ng01-036C02.b_46_1006

seq1  GAATTCCAAGACCCTGAGCCTCTTCTAAGAGGAGCTACAGCCCCCAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACCCTGAGCCTCTTCTAAGAGGAGCTACAGCCCCCAGTTT  50

seq1  CCATGGAGCTCCTCTTGGGCACCTGGCTTTATTCCCCAGAAGGTAGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGCTCCTCTTGGGCACCTGGCTTTATTCCCCAGAAGGTAGTCTG  100

seq1  AGGGACCCTGGCAGGCATGGTCCTGTGCACAGTCAAGTCTCTTGACTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCCTGGCAGGCATGGTCCTGTGCACAGTCAAGTCTCTTGACTGTG  150

seq1  AGAGGGATATTTTCCCCTGCTAGTCTACAGATAAAGAAACTGAGACCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGATATTTTCCCCTGCTAGTCTACAGATAAAGAAACTGAGACCTTT  200

seq1  CTGAGGGCACACTAGAGGTCAGCTAGGGGACTTGGGGTTTTCCTGCAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGCACACTAGAGGTCAGCTAGGGGACTTGGGGTTTTCCTGCAGTC  250

seq1  CTGAACTCAGAGCTCATTTTCCTCTCTGCTTTTTCTTGCAGGACTCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTCAGAGCTCATTTTCCTCTCTGCTTTTTCTTGCAGGACTCAGAC  300

seq1  AGCATAGAATCTACTCAGCATCTCCTTCGCCACAGCCTCCCTTCCCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGAATCTACTCAGCATCTCCTTCGCCACAGCCTCCCTTCCCCAAC  350

seq1  ATCACATTAGCCTTGAGTTGTGATCGACTGGCAGGAGCCCTAGCAGGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATTAGCCTTGAGTTGTGATCGACTGGCAGGAGCCCTAGCAGGTGA  400

seq1  GTGGATGGGCCAGCTATATTGGTACTGGGAATCGGCCACTGAGGGCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGGGCCAGCTATATTGGTACTGGGAATCGGCCACTGAGGGCTGGG  450

seq1  CAGGTATCTGTGGCCACCTGAAGTAGGAGATCTGGCTGGAGGAGCTGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATCTGTGGCCACCTGAAGTAGGAGATCTGGCTGGAGGAGCTGGGT  500

seq1  GGGGAAATGTCTCATTCCCAATTTCTGTTTTGTTCCTGAGCTCTGAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAATGTCTCATTCCCAATTTCTGTTTTGTTCCTGAGCTCTGAAGCC  550

seq1  GGAGAGGAGAGGGCATGGACCTAGCCTCGTTGTTGGGAGTGTGGTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGAGGGCATGGACCTAGCCTCGTTGTTGGGAGTGTGGTTTATT  600

seq1  TACCATCAGTACCCTGTATAGGCTTGTTAGGTCTCTCCATCCTGCTGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCAGTACCCTGTATAGGCTTGTTAGGTCTCTCCATCCTGCTGATG  650

seq1  GATTTTGCCTTCTAGTTTAGTTCACAGAGA-TAATAACAGTAGTCATAGC  699
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GATTTTGCCTTCTAGTTTAGTTCACAGAGATTAATAACAGTAGTCATAGC  700

seq1  TCCTGTGAGTACCTGACTGTACACTGGTACCATTTTCCCTCCATAACTGC  749
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  TCCTGTGAGTACCTGACTGTACACTGGTACCA-TTTCCCTCCAT-ACTGC  748

seq1  CCTTGAGGGGTGGCTGTCACCATCACCAGTGTACAGATGAGGAGACTGAG  799
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  CCTTGAGGGGTGGCTGTCACCAT-ACCAGTGTACAGATGA-GAGACTGAG  796

seq1  CCTTGGTACCTTG-TCCGAGGCCACATGCTGTTCAAAACCTGGGTTCAAG  848
      |||| |||||||| ||||||| ||||||||| ||||||||||||||||||
seq2  CCTT-GTACCTTGTTCCGAGG-CACATGCTG-TCAAAACCTGGGTTCAAG  843

seq1  GTCAGGTCTGTGCACCCCCGAACTCTCTCCTGGTTTCCCCATCCTGGGGC  898
      | || |||||||||||||||||  ||||||||| |||||||| |||||||
seq2  G-CA-GTCTGTGCACCCCCGAATCCTCTCCTGG-TTCCCCAT-CTGGGGC  889

seq1  TCCTTTTTGAGGGTTGGGGCTGAGTCTCCTCAGTAGTGATAACTCAGTGC  948
      | | |||| | |||| |||| ||||||||||||| || ||||  ||||||
seq2  TTCCTTTTTATGGTTTGGGCCGAGTCTCCTCAGT-GT-ATAATCCAGTGC  937

seq1  AAAAGGAGAAGTCTTCTACAAAGTGA  974
      ||| |||| ||| |||||||| ||||
seq2  AAATGGAG-AGT-TTCTACAATGTGA  961

seq1: chr14_26519969_26520790
seq2: B6Ng01-036C02.g_60_889 (reverse)

seq1  TTTGGAATGAAATTTACATCTTTGGGGCTCA-TTTGTTTTTGTGACAGGG  49
      |||||||||||| |||||| ||||||||||| |||||||||| |||| ||
seq2  TTTGGAATGAAA-TTACATTTTTGGGGCTCATTTTGTTTTTG-GACAAGG  48

seq1  TCTTGCTGTGTGGTCCAGGGTCTTGCTGT-ATAGCCTTTGGCTAGCTTCA  98
      |||| | |||| |||||| |||||||||| |||||| ||||||||| |||
seq2  TCTTAC-GTGT-GTCCAGAGTCTTGCTGTAATAGCCCTTGGCTAGC-TCA  95

seq1  AACACTCTTGACCTTCCTCAATGCTGTTGGGATTACAGGCATGGAACA-T  147
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  AACACTC-TGACCTTCCTCAATGCTGTTGGGATTACAGGCATGGAACATT  144

seq1  TGACTCCAGCTGGGGCCAGTCTTGG-AGTTAC-TATGTGTTAGGTTCTAT  195
      ||||||||||||||||||||||||| |||||| |||||||||||||||| 
seq2  TGACTCCAGCTGGGGCCAGTCTTGGAAGTTACTTATGTGTTAGGTTCTAA  194

seq1  GCTTTGAACTGT-TTTTTGTTTGT-TTTGTTGTTTTATGATGCTAGGGCC  243
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  GCTTTGAACTGTATTTTTGTTTGTATTTGTTGTTTTATGATGCTAGGGCC  244

seq1  TTTGTGCACACAA--GCCACGTCCTCAGCCTTATTGTAAGGAAATCCGTG  291
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  TTTGTGCACACAAAGCCCACGTCCTCAGCCTTATTGTAAGGAAATCCGTG  294

seq1  TAG-AACATTCTGTGTCCTAA--CCCCAAGTACTAGCTCAG-AAGCCACT  337
      ||| |||||||||||||||||  ||| |||||||||||||| ||||||||
seq2  TAGAAACATTCTGTGTCCTAAACCCCAAAGTACTAGCTCAGAAAGCCACT  344

seq1  GAGAACAT-CCTTGCTACCATCTGTCCTGTAGGATGGTCCAGACAGTCCC  386
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATCCCTTGCTACCATCTGTCCTGTAGGATGGTCCAGACAGTCCC  394

seq1  CACCGTGAGCACTACCTCTAGGTGAAGTCCCAGCTATGCTTAGTGATTGA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTGAGCACTACCTCTAGGTGAAGTCCCAGCTATGCTTAGTGATTGA  444

seq1  GCTTCAGTTTCTCTCAGCTACATAATGTGTACATGACATCTAGGTCTGGA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGTTTCTCTCAGCTACATAATGTGTACATGACATCTAGGTCTGGA  494

seq1  ATTGGGTGTGACCCATGTGAGGTGCATGGTCTTGGGCCAGATGTATCATC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTGTGACCCATGTGAGGTGCATGGTCTTGGGCCAGATGTATCATC  544

seq1  ACAGCAATCTCTGGGTAGTGACTTACAAGAGGGTGACATTTCCCGTGTGT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATCTCTGGGTAGTGACTTACAAGAGGGTGACATTTCCCGTGTGT  594

seq1  CAGAGATCCTTAGGAAAGGGGGCTGAGATCACCAAAGGTTAGAGGTGGGT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCCTTAGGAAAGGGGGCTGAGATCACCAAAGGTTAGAGGTGGGT  644

seq1  TTCCCTTTTCTCATGCTGGGTCACTGAAATGTGGAATTCTTCATTGCTGA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTTCTCATGCTGGGTCACTGAAATGTGGAATTCTTCATTGCTGA  694

seq1  ATTCTCAGGGAAGACAGGACTGGGGCAAGCACATGACTAAGAGTTTCCTT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAGGGAAGACAGGACTGGGGCAAGCACATGACTAAGAGTTTCCTT  744

seq1  AGGTGGGTAGGGACATAGCATAGCTCATGGAGAAGGGATGTGGGCTCTGG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGTAGGGACATAGCATAGCTCATGGAGAAGGGATGTGGGCTCTGG  794

seq1  CTGCGGTGAGTATTGCATTCATGCCATATAGAATTC  822
      ||||||||||||||||||||||||||||||||||||
seq2  CTGCGGTGAGTATTGCATTCATGCCATATAGAATTC  830