BAC Information

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BAC

Clone NameB6Ng01-036C22
Chromosome14 (Build37)
Map Location 118,931,289 - 119,051,446
singlet/doubletdoublet
Overlap geneAbcc4
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422
Downstream geneCldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601, EG621324
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036C22.bB6Ng01-036C22.g
ACCDH864441DH864442
length1,043842
definitionDH864441|Mus musculus domesticus DNA, BAC clone: B6Ng01-036C22, 5' end.DH864442|Mus musculus domesticus DNA, BAC clone: B6Ng01-036C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,931,289 - 118,932,352)(119,050,613 - 119,051,446)
sequence
gaattccaagaaatttgggggtggctttgaaggtacctgtacctttaaaa
aatgatccagtttcttctgtgccctgtttatctgcatacggatcacatgc
catttgggtaagctaaggactacgaaaataattaactagttcacctaaca
agcatgctacattctgggggccatctggcctttcccccacattactagaa
ggatatcttgaagtagactctatgacacagatgtcatttgtcagcaattt
caggaaggtgacatcctgcattgcttaatattgtggcttttccaggactc
tgaagcccctctgggacacaagctaagggattatgtttctcctcagagaa
gaagcctagagagagcctgcaggccgcgttcctgccctgccaggataact
tcaggataccacgggacacttgtcattaactggtttgattttcttctgtt
gccattggtagtagccagcaaggacttccaagcattacctcaagcgatga
gaaccctgcagggcagacattaaaagccctcacaaagggaagaacatatc
ggggtactcggaccacactatacagctgtcttctttccaacactcttctc
atctgagccagtatctcaaaaggagagtaatctgcgttaagtatgctggg
tgtttttctctagactttgtcacaaagagaacccacagttctctctctgc
taatacctggtcggtatccccaatactggagttctcactaagccgctcaa
ggtgggcaacacactagagaacctgacatggcacgctttggaagagcaca
ctgcgggatatatgttcttaaaatatgtggcacaggttaatactctgata
gctgatgcccgtggcagacatggctaatggatcacagcatcctgacagga
atgacacataccttcataatctaggcattactaaatgacaggtcagctgt
gtcacgcatcagtactgtgtgttttatgcactatgtacactgctttgcat
gtttactttacaataacagcaaaaccccccaacaaacaacaaa
gaattcacttgttattcttcttagtttctctgccaacacttcggaactgg
cctcggggaaatctgatctagcgtggcagatttgttcacctgcatgtaag
taaacgtctctcagaggtattcattggtcagtatggttatcccaggaaaa
atctctttatgaagtcctgagttgctgtgctcagagattcagcctgaaac
cctagaaacgtgggaaagatgaatttcctcttgccagccttgcgcaagaa
gtacgctgaggtgaagtttaagatgctttctttcaggaggatggcttccg
ggaggctgaggcgggtctgggtgtgtatctgctaggcccttctgcacgtg
ctcggagctcacgtgaggcttcagtgcctgatccatgatctgaggagaaa
tcggattgggtggtatacacggagtgactgtttctatcatcacggtagtg
tgtgttgctgaatgacctcgtgggatggatcgtacataaaaacggcttgt
tgatctggagaggtggctgggtggataacgagaatgtgcttcacatacaa
gtataaggaccacaccgttccccaggcccctatacaaaagccaggtgcac
ggcagcttgacctgtctgtaatcttagcacttaagagggggacatagggc
aagttacctgggttacactcattaaattggcaacctctgggtttattagt
gtcttaattagggttttactgctatgaaccagaccccatggaccaagggc
acttcttacaaggacaacattttaattgggggctggctcacaagttcaaa
ggtcagtctatttatcttcaggtgggggacatggcagcatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118931289_118932352
seq2: B6Ng01-036C22.b_44_1086

seq1  GAATTCCAAGAAATTTGGGGGTGGCTTTGAAGGTACCTGTACCTTTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAAATTTGGGGGTGGCTTTGAAGGTACCTGTACCTTTAAAA  50

seq1  AATGATCCAGTTTCTTCTGTGCCCTGTTTATCTGCATACGGATCACATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCCAGTTTCTTCTGTGCCCTGTTTATCTGCATACGGATCACATGC  100

seq1  CATTTGGGTAAGCTAAGGACTACGAAAATAATTAACTAGTTCACCTAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGGTAAGCTAAGGACTACGAAAATAATTAACTAGTTCACCTAACA  150

seq1  AGCATGCTACATTCTGGGGGCCATCTGGCCTTTCCCCCACATTACTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCTACATTCTGGGGGCCATCTGGCCTTTCCCCCACATTACTAGAA  200

seq1  GGATATCTTGAAGTAGACTCTATGACACAGATGTCATTTGTCAGCAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATCTTGAAGTAGACTCTATGACACAGATGTCATTTGTCAGCAATTT  250

seq1  CAGGAAGGTGACATCCTGCATTGCTTAATATTGTGGCTTTTCCAGGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGTGACATCCTGCATTGCTTAATATTGTGGCTTTTCCAGGACTC  300

seq1  TGAAGCCCCTCTGGGACACAAGCTAAGGGATTATGTTTCTCCTCAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCCCTCTGGGACACAAGCTAAGGGATTATGTTTCTCCTCAGAGAA  350

seq1  GAAGCCTAGAGAGAGCCTGCAGGCCGCGTTCCTGCCCTGCCAGGATAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTAGAGAGAGCCTGCAGGCCGCGTTCCTGCCCTGCCAGGATAACT  400

seq1  TCAGGATACCACGGGACACTTGTCATTAACTGGTTTGATTTTCTTCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATACCACGGGACACTTGTCATTAACTGGTTTGATTTTCTTCTGTT  450

seq1  GCCATTGGTAGTAGCCAGCAAGGACTTCCAAGCATTACCTCAAGCGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGGTAGTAGCCAGCAAGGACTTCCAAGCATTACCTCAAGCGATGA  500

seq1  GAACCCTGCAGGGCAGACATTAAAAGCCCTCACAAAGGGAAGAACATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTGCAGGGCAGACATTAAAAGCCCTCACAAAGGGAAGAACATATC  550

seq1  GGGGTACTCGGACCACACTATACAGCTGTCTTCTTTCCAACACTCTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTACTCGGACCACACTATACAGCTGTCTTCTTTCCAACACTCTTCTC  600

seq1  ATCTGAGCCAGTATCTCAAAAGGAGAGTAATCTGCGTTAAGTATGCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGCCAGTATCTCAAAAGGAGAGTAATCTGCGTTAAGTATGCTGGG  650

seq1  TGTTTTTCTCTAGACTTTGTCACAAAGAGAACCCACAGTTCTCTCTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTCTAGACTTTGTCACAAAGAGAACCCACAGTTCTCTCTCTGC  700

seq1  TAATACCTGGTCGGTATCCCCAATACTGGAGTTCTCACTAAGCCGCTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCTGGTCGGTATCCCCAATACTGGAGTTCTCACTAAGCCGCTCAA  750

seq1  GGTGGGCAACACACTAGAGAACCTGACATGGCACGCTTTGGAAGAGCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCAACACACTAGAGAACCTGACATGGCACGCTTTGGAAGAGCACA  800

seq1  CTGCGGGATATATGTTCTTAAAATATGTGGCACAGGTTAATACTCTGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGGATATATGTTCTTAAAATATGTGGCACAGGTTAATACTCTGATA  850

seq1  GCTGATGCCCGTGGCAGACATGGCTAATGGATCACAGCATCCTGACAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGCCCGTGGCAGACATGGCTAATGGATCACAGCATCCTGACAGGA  900

seq1  ATGACAACATACCTTCATAATCTAGGCATTACTAAATGACAGGGTCAGCT  950
      ||||| ||||||||||||||||||||||||||||||||||| ||||||| 
seq2  ATGAC-ACATACCTTCATAATCTAGGCATTACTAAATGACA-GGTCAGC-  947

seq1  TGTGTCACGCATCCAAGTACTGTTGTGGTTTTATGCAACTATGTACCACT  1000
      |||||||||||||  ||||||| ||| ||||||||| |||||||| ||||
seq2  TGTGTCACGCATC--AGTACTG-TGT-GTTTTATGC-ACTATGTA-CACT  991

seq1  GGCCTTTGCAATGTTTACTTTTACAAATAAACAAGCAAAAACACCCCCCC  1050
      |  |||||| |||||||| ||||| |||||   ||||||   ||||||| 
seq2  G--CTTTGC-ATGTTTAC-TTTAC-AATAA--CAGCAAA---ACCCCCCA  1031

seq1  CCAAACAAAACAAA  1064
       |||||  ||||||
seq2  ACAAAC--AACAAA  1043

seq1: chr14_119050613_119051446
seq2: B6Ng01-036C22.g_67_908 (reverse)

seq1  AGATGCTGCCATGTCCCCACCTTGATGAT-AATAGACTGAACCTCTGAAC  49
      ||||||||||||||||||  | ||| ||| ||||||||| |||| |||||
seq2  AGATGCTGCCATGTCCCCCACCTGAAGATAAATAGACTG-ACCTTTGAAC  49

seq1  TTGTGAGCCAG-CCCCAATT-AAATGTTGTCCTTGTAAG-AGTTGCCTTG  96
      ||||||||||| |||||||| |||||||||||||||||| |||  |||||
seq2  TTGTGAGCCAGCCCCCAATTAAAATGTTGTCCTTGTAAGAAGTGCCCTTG  99

seq1  GT-CATGGTGTCT-GTTCATAGCAGTAAAACCCTAATTAAGACACTAATA  144
      || ||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  GTCCATGGGGTCTGGTTCATAGCAGTAAAACCCTAATTAAGACACTAATA  149

seq1  AACCCAGAGGTTGCCAATTTAATGAGTGTAA-CCAGGTAACTTGCCCTAT  193
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACCCAGAGGTTGCCAATTTAATGAGTGTAACCCAGGTAACTTGCCCTAT  199

seq1  GTCCACCTCTTAAGTGCTAAGATTACAGACAGGTCAAGCTGCCGTGCACC  243
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCTCTTAAGTGCTAAGATTACAGACAGGTCAAGCTGCCGTGCACC  249

seq1  TGGCTTTTGTATA-GGGCCTGGGGAACGGTGTGGTCCTTATACTTGTATG  292
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTGTATAGGGGCCTGGGGAACGGTGTGGTCCTTATACTTGTATG  299

seq1  TGAAGCACATTCTCGTTATCCACCCAGCCACCTCTCCAGATCAACAAGCC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCACATTCTCGTTATCCACCCAGCCACCTCTCCAGATCAACAAGCC  349

seq1  G-TTTTATGTACGATCCATCCCACGAGGTCATTCAGCAACACACACTACC  391
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATGTACGATCCATCCCACGAGGTCATTCAGCAACACACACTACC  399

seq1  GTGATGATAGAAACAGTCACTCCGTGTATACCACCCAATCCGATTTCTCC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGATAGAAACAGTCACTCCGTGTATACCACCCAATCCGATTTCTCC  449

seq1  TCAGATCATGGATCAGGCACTGAAGCCTCACGTGAGCTCCGAGCACGTGC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCATGGATCAGGCACTGAAGCCTCACGTGAGCTCCGAGCACGTGC  499

seq1  AGAAGGGCCTAGCAGATACACACCCAGACCCGCCTCAGCCTCCCGGAAGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGCCTAGCAGATACACACCCAGACCCGCCTCAGCCTCCCGGAAGC  549

seq1  CATCCTCCTGAAAGAAAGCATCTTAAACTTCACCTCAGCGTACTTCTTGC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCTGAAAGAAAGCATCTTAAACTTCACCTCAGCGTACTTCTTGC  599

seq1  GCAAGGCTGGCAAGAGGAAATTCATCTTTCCCACGTTTCTAGGGTTTCAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCTGGCAAGAGGAAATTCATCTTTCCCACGTTTCTAGGGTTTCAG  649

seq1  GCTGAATCTCTGAGCACAGCAACTCAGGACTTCATAAAGAGATTTTTCCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATCTCTGAGCACAGCAACTCAGGACTTCATAAAGAGATTTTTCCT  699

seq1  GGGATAACCATACTGACCAATGAATACCTCTGAGAGACGTTTACTTACAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAACCATACTGACCAATGAATACCTCTGAGAGACGTTTACTTACAT  749

seq1  GCAGGTGAACAAATCTGCCACGCTAGATCAGATTTCCCCGAGGCCAGTTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGAACAAATCTGCCACGCTAGATCAGATTTCCCCGAGGCCAGTTC  799

seq1  CGAAGTGTTGGCAGAGAAACTAAGAAGAATAACAAGTGAATTC  834
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTGTTGGCAGAGAAACTAAGAAGAATAACAAGTGAATTC  842