BAC Information

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BAC

Clone NameB6Ng01-038B16
Chromosome1 (Build37)14 (Build37)
Map Location 64,940,109 - 64,940,98691,201,244 - 91,202,339
singlet/doubletsingletsinglet
Overlap gene9430067K14Rik
Upstream geneLOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5
Downstream geneLOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038B16.bB6Ng01-038B16.g
ACCDH865774DH865775
length1,0271,072
definitionDH865774|Mus musculus domesticus DNA, BAC clone: B6Ng01-038B16, 5' end.DH865775|Mus musculus domesticus DNA, BAC clone: B6Ng01-038B16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,940,109 - 64,940,986)(91,201,244 - 91,202,339)
sequence
gaattctaggtgctagaccctactgtctttagaagtccttatttcccttg
tgtccttcagcccctatagtttcacctcctcttccacagggttctctgag
ctctgattggagatgggggttaaggggagtgggagagattgatggaagac
tctggtcatgaacttgtgtcagatctctctctatttctgacacccagccg
tgaggagtgccacctcatgggaaggagttctctctcgagagatgtaaaga
cacctcagaatagcgatgctgcttgcatagtattcatcagccttgctggg
tctctgaggggtaggatgcttgtgccagggtttctgtgttaataacagga
aaccaaggcaacctggtgtctttgggagcagggccctggttattgccagg
tgccctgacagtgcctggacaatgcttatagaatcaggaaacccccagga
gaggaaaagggcactaacggtcagttccctaccagcagccagtggccttg
gtagctggcaaggcttgttgaggcagcaagcactgaaggcattgggagaa
gctgccgtgtctgctgtgttgagggtgcagagagcacactgggtttaccc
ggtggatgtggaaagctcttgggctggaataagtaggttatgtatccaaa
ggagaggcataggaaggagcgctgcaaaggtagagccagtcaaatccaga
ctcccttacactgacattttttaagcaaagaaatgctgtgtgtcggtttt
gcgggcatgtcgtcactagaccagctgacaccagatccaagctctacctt
tgatttgctgagtaatctcttcataacacatttcacatcgaaaagtcctt
cctttcttcctctctctatccctaccttccttccttttcttcctttatgg
gtttaatttgtcttggtttagttttgattttctttttggtgacaaaatgt
caagttacattggctatctcaaacttgtttatagccaaaatgacctttaa
ctctgaatccctccctctgcctttgaa
gaattctccttggtaatctgaatcaaccactcctcctaagacatatttat
ccctttcttagtttgctggcgtgagagcatgaggattcttagtggcttct
ccatggcaaaaaaagtgagctttcagttccagaaaatatttgttcatagc
catatcaggtctgtggattggaaatgcttgctttcagtgccatggtttct
atctattctgctgttctctagaatggggtgtagaaattattgttttaatt
taatctagttagctattggtccttgcttcaaacattaaatctaaaagaaa
agtgtcatggctaggaaaatcattgagcaaagaaaactgtcaaatttcat
attcctttaagtttcaggtattactacaatgtctatatacatccaggaag
atagaaaataaatacacatttttaaaattttttaaattgattttttattt
ttaaatatctgacttcacaaaggggactctaaaatgcagaagagattcag
ggaagttctacaaactctatgagaccacagatgccagcccagactgccaa
actcaccaaacccttaaatcactgtaaatggagaaagaaaaaaaaatcca
tgataaaaccaaatttaagcgacatctatctacaaatccaggcctccaga
tggcactagaaggaaaattgcaatgtgaagatgtcaaccacaacccagga
aacacagggatgaagcaatctcagaaaggaaatcatagaagagaagatac
actactaccttcccttgataaagtataattatcttttcttttttaaccta
gactattaaaattaaaattacctaaataagcatcattgcctcccctgtaa
attttggatgccatacccatagagcgtatgtgattgccaatatggaacta
tgggtttttatacttgtatgtagtcatttttacccccatattccattccg
tgctctccctccgcctcagctgctcagtctcatcttcctcacacgagccc
gtgtccatatggatgccccaccctccccccatctattctaacctcctggg
gctcctagtctgttcagattag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_64940109_64940986
seq2: B6Ng01-038B16.b_194_1067 (reverse)

seq1  TTCAAAGGCAGAGGGAAGAGGATCAGAAGTTAAAGGTCATTTTGGCTATA  50
      ||||||||||||||| || |  |||| |||||||||||||||||||||||
seq2  TTCAAAGGCAGAGGG-AGGGATTCAG-AGTTAAAGGTCATTTTGGCTATA  48

seq1  TATCAAGTTTGAGGTTAGCCTATGTGACTTGACATTTTGTCCACAAAAAG  100
       | ||||||||| | ||||| |||| |||||||||||||||  |||||||
seq2  -AACAAGTTTGA-GATAGCCAATGTAACTTGACATTTTGTCACCAAAAAG  96

seq1  AAAATCAAAACTAAACCAAGACAAAAATTAAAACAATAAAAGGAAGAAAA  150
      ||||||||||||||||||||||  |||||||| | || ||||||||||||
seq2  AAAATCAAAACTAAACCAAGAC--AAATTAAACCCAT-AAAGGAAGAAAA  143

seq1  GGAAGGAAGGTAGGGATAGAGAGAGGAAGAAAGGAAGGACTTTTCGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGTAGGGATAGAGAGAGGAAGAAAGGAAGGACTTTTCGATGT  193

seq1  GAAATGTGTTATG-AGAGATTACTCAGCAAATCAAAGGTAGAGCTTGGAT  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGTTATGAAGAGATTACTCAGCAAATCAAAGGTAGAGCTTGGAT  243

seq1  CTGGTGTCAGCTGGTCTAGTGACGACATGACCGC-AAACCGACACACAGC  298
      ||||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  CTGGTGTCAGCTGGTCTAGTGACGACATGCCCGCAAAACCGACACACAGC  293

seq1  ATTTCTTTGCTTGAAAAATGTCAGTGTAA-GGAGTCTGGATTTGACTGGC  347
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  ATTTCTTTGCTTAAAAAATGTCAGTGTAAGGGAGTCTGGATTTGACTGGC  343

seq1  TCTACCTTTGCAGCGCTCCTTCCTATGCCTCTCCTTTGGATACATAACCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTTGCAGCGCTCCTTCCTATGCCTCTCCTTTGGATACATAACCT  393

seq1  ACTTATTCCAGCCCAAGAGCTTTCCACATCCACCGGGTAAACCCAGTGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTCCAGCCCAAGAGCTTTCCACATCCACCGGGTAAACCCAGTGTG  443

seq1  CTCTCTGCACCCTCAACACAGCAGACACGGCAGCTTCTCCCAATGCCTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCACCCTCAACACAGCAGACACGGCAGCTTCTCCCAATGCCTTC  493

seq1  AGTGCTTGCTGCCTCAACAAGCCTTGCCAGCTACCAAGGCCACTGGCTGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGCTGCCTCAACAAGCCTTGCCAGCTACCAAGGCCACTGGCTGC  543

seq1  TGGTAGGGAACTGACCGTTAGTGCCCTTTTCCTCTCCTGGGGGTTTCCTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGGAACTGACCGTTAGTGCCCTTTTCCTCTCCTGGGGGTTTCCTG  593

seq1  ATTCTATAAGCATTGTCCAGGCACTGTCAGGGCACCTGGCAATAACCAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATAAGCATTGTCCAGGCACTGTCAGGGCACCTGGCAATAACCAGG  643

seq1  GCCCTGCTCCCAAAGACACCAGGTTGCCTTGGTTTCCTGTTATTAACACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCTCCCAAAGACACCAGGTTGCCTTGGTTTCCTGTTATTAACACA  693

seq1  GAAACCCTGGCACAAGCATCCTACCCCTCAGAGACCCAGCAAGGCTGATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGGCACAAGCATCCTACCCCTCAGAGACCCAGCAAGGCTGATG  743

seq1  AATACTATGCAAGCAGCATCGCTATTCTGAGGTGTCTTTACATCTCTCAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  AATACTATGCAAGCAGCATCGCTATTCTGAGGTGTCTTTACATCTCTCGA  793

seq1  TGTAGAACTCCTTCCCATGAGGTGGCACTCCTCACGGCTGGGTGTCAGAA  847
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACTCCTTCCCATGAGGTGGCACTCCTCACGGCTGGGTGTCAGAA  843

seq1  ATAGAGAGAGATCTGACACAAGTTCATGACC  878
      |||||||||||||||||||||||||||||||
seq2  ATAGAGAGAGATCTGACACAAGTTCATGACC  874

seq1: chr14_91201244_91202339
seq2: B6Ng01-038B16.g_65_1136 (reverse)

seq1  CTAATCTGAAAGAGACTAGAGGCCCCAGGGAGTTTAGAGATCAGATGGGG  50
      |||||||| || |||||||  |||||| |||| ||||| || ||||||||
seq2  CTAATCTG-AACAGACTAGGAGCCCCA-GGAGGTTAGA-AT-AGATGGGG  46

seq1  TGGAGGGTGGTGGCATCCATATGGAGAAGGGTGTGGTGGGGAGGAAGTAT  100
       ||||||||| |||||||||||||| | |||  | || | ||||||| ||
seq2  -GGAGGGTGG-GGCATCCATATGGACACGGG-CTCGT-GTGAGGAAG-AT  91

seq1  GGGATGTGGAGCAGTTGGAGGGTGGGAGGGGAGGAGCACGGAATGGAATA  150
      | ||    |||||| | ||||   ||||||   |||||||||||||||||
seq2  GAGA--CTGAGCAGCT-GAGG--CGGAGGG--AGAGCACGGAATGGAATA  134

seq1  TGGAGTGTAAAAAATGAATTACATATAAAATTAAAAAAAACCCATAGTTC  200
      ||| | || ||||||| | |||||| ||     | |||||||||||||||
seq2  TGG-GGGT-AAAAATG-ACTACATACAA---GTATAAAAACCCATAGTTC  178

seq1  CATATTTGGGAAATAACATACGCTCTATGGGTATGGCATCCAAAATTTAA  250
      ||||||  || ||| |||||||||||||||||||||||||||||||||| 
seq2  CATATT--GGCAATCACATACGCTCTATGGGTATGGCATCCAAAATTTAC  226

seq1  AGGGGAGGCAATGATGCTTATTTAGGTAATTTTAATTTTAATAGTCTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGCAATGATGCTTATTTAGGTAATTTTAATTTTAATAGTCTAGG  276

seq1  TTAAAAAAGAAAAGATAATTATACTTTATCAAGGGAAGGTAGTAGTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAGAAAAGATAATTATACTTTATCAAGGGAAGGTAGTAGTGTAT  326

seq1  CTTCTCTTCTATGATTTCCTTTCTGAGATTGCTTCATCCTTGTGTTTCCT  400
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTCTCTTCTATGATTTCCTTTCTGAGATTGCTTCATCCCTGTGTTTCCT  376

seq1  GGGTTGTGGTTGACATCTTCACATTGCAATTTTCCTTCTAGTGCCATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTGGTTGACATCTTCACATTGCAATTTTCCTTCTAGTGCCATCTG  426

seq1  GAGGCCTGGATTTGTAGATAGATGTTGCTTAAATTTGGTTTTATCATGGA  500
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGGCCTGGATTTGTAGATAGATGTCGCTTAAATTTGGTTTTATCATGGA  476

seq1  TTTTTTTTTCTTTCTCCATTTACAGTGATTTAAGGGTTTGCTGAGTTTGG  550
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTTTTTTTCTTTCTCCATTTACAGTGATTTAAGGGTTTGGTGAGTTTGG  526

seq1  CAGTCTGGGCTGGCATCTGTGGTCTCATAGAGTTTGTAGAACTTCCCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGGGCTGGCATCTGTGGTCTCATAGAGTTTGTAGAACTTCCCTGA  576

seq1  ATCTCTTCTGCATTTTAGAGTCCCCTTTGTGAAGTCAGATATTTAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTCTGCATTTTAGAGTCCCCTTTGTGAAGTCAGATATTTAAAAAT  626

seq1  AAAAAATAAATTTAAAAAATTTTAAAAATGTGTATTTATTTTCTATCTTC  700
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCAATTTAAAAAATTTTAAAAATGTGTATTTATTTTCTATCTTC  676

seq1  CTGGATGTATATAGACATTGTAGTAATACCTGAAACTTAAAGGAATATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTATATAGACATTGTAGTAATACCTGAAACTTAAAGGAATATGA  726

seq1  AATTTGACAGTTTTCTTTGCTCAATGATTTTCCTAGCCATGACACTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGACAGTTTTCTTTGCTCAATGATTTTCCTAGCCATGACACTTTTC  776

seq1  TTTTAGATTTAATGTTTGAAGCAAGGAACAATAGCTAACTAGATTAAATT  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTTAGATTTAATGTTTGAAGCAAGGACCAATAGCTAACTAGATTAAATT  826

seq1  AAAACAATAATTTCTACACCCCATTCTAGAGAACAGCAGAATAGATAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATAATTTCTACACCCCATTCTAGAGAACAGCAGAATAGATAGAA  876

seq1  ACCATGGCACTGAAAGCAAGCATTTGCAATCCACAGACCTGATATGGCTA  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACCATGGCACTGAAAGCAAGCATTTCCAATCCACAGACCTGATATGGCTA  926

seq1  TGAACAAATATTTTCTGGAACTGAAAGCTCACTTTTTTTGCCATGGAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAATATTTTCTGGAACTGAAAGCTCACTTTTTTTGCCATGGAGAA  976

seq1  GCCACTAAGAATCCTCATGCTCTCACGCCAGCAAACTAAGAAAGGGATAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTAAGAATCCTCATGCTCTCACGCCAGCAAACTAAGAAAGGGATAA  1026

seq1  ATATGTCTTAGGAGGAGTGGTTGATTCAGATTACCAAGGAGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTTAGGAGGAGTGGTTGATTCAGATTACCAAGGAGAATTC  1072