BAC Information

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BAC

Clone NameB6Ng01-038J16
Chromosome14 (Build37)
Map Location 112,487,831 - 112,488,530
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk5, LOC100043501
Downstream geneEG223186, LOC100043509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038J16.bB6Ng01-038J16.g
ACCDH866120DH866121
length1,2651,083
definitionDH866120|Mus musculus domesticus DNA, BAC clone: B6Ng01-038J16, 5' end.DH866121|Mus musculus domesticus DNA, BAC clone: B6Ng01-038J16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttttaatcttcttgtatctgttgaaggctgatcttttacaagtt
tatggtcaattttggagaaggtaccatgaggtgctgagaagatagcatat
tcttttgttttaggatgagtctatagatatctgttaaatccatttggttc
ataaattttctgtaagtttcactgtgtctctgtttagtttctgattccat
gatctgtccattactgagagtatggtgttgaagtcttccactattattgt
gttacataaagtgtgtgctttgagctttagtaaagtgtctttaatgaatg
tggatgtatttccatttggagcacagaaacaataaagaaatcacaaaggt
gcacaaccctggaggtagaaaacctagaatagagatcaggagtcatagat
gcaagaaccaccaacagaatacaagatatagaagagagaatctcaggggc
agaagataccacagaaaacattgaaaccagagttaaagaaaattcaaaat
gcaaaaatctcttcacaggaaacatccatgaaatataggacacaatgaga
agaccaaacctgaggataatgggtatatatgatagtgaagattccaaaat
taaaaggccagtaaatatcatcaacaaagttatagaagaaaactccctta
acctaaagaaagagatacccatgaaaatacaagaagcctacagaactcca
aatagactggaacaagaaaagaaattcctcctgtcacataatagtcaaaa
aacaccatgcacagcacaaaagaaagaatattaaaagcagtaaggggaaa
agtaacataagtaacatacaaagtcaaacctttcagaattataccagact
tttcaccagatactctaaaagccagaagatcctgggcagatgtcaagaac
ctaaggaacacaaatgccagctcccactactatacccagcaaaacttaca
ttacagtagatggagaaacctagatatctgtgactaaaccaaatttacac
atatcttttcacaaacccagtctgcaagggtatagatggaaaactccaca
caagagggaactgaactctaggaaaagcaagaaagtatctttcaacatcc
aaagaagattggccacaactaatcacctttacacaagatacgagcaatgt
cccatatttctacgtatccaagtccaggatctgagcctaacctacgctac
gatatgctgatggaagctgagattaaggtcatgttcaggacctagagata
catatttctcgatga
gaattctgttttatcattcatcccattcatttaggtttcaaatgatatcc
ccttctccggttacacctccccaactaccccagttccatcagccctctct
ccttctcctttgcctctatgagggtgctccccgtctcacccaaccattct
tgccctaccactctagcatttccctatgctgggctatcaaacctccacaa
gaccaagggcctcccatcccatttatgtcagacaaggtcatcctctgcta
tacaagtatctacagccatggatccctccctgtacactccttggttggtg
gtctagtccctaggagcactggttgttctggccagtcagcatttttcttc
ctatggggttgcaatccctctctgctcttctagtccttttgctagctaga
cactgcagtccctgagctcagtctgatgattggctgtgaacatccgcctt
tacaaaaaatggagaagaaactgaaggaggaagggccatctggggactac
accacctgggattccatcctgtctgcagacaccaaatcctgagactgttg
ctgttgccaagaggcactggctgacaggaacctggtgtggctgttccctc
agaggttctgccagcacctgatcaatgatcagtttatttaaaaaaaaatt
aaataaataaaacaattaattaaaaggctggagaaatggctcagcaatta
caagcatttgctactcttgtaaagaacccatgtttaattctcagaatgca
catgatagactatagctacccataactccagttccaggaaatctggaact
ataagaaaaatggtacataaaataaatgatgaacaaataatgaataaaca
tacttgcaaacaaacactttaacaataaaatcaattaaattaaaacatgt
aatacaaatatatactgagctttaaaagattgtataccaaagttttaagg
atacaggctgatttctacctttgacagctcagagtaaacatttatgttaa
gagcactttgtatttcctggaactcaattccatttattctattatagaat
tctatatggatcactgaatgctgagacagagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112487831_112488530
seq2: B6Ng01-038J16.g_469_1147

seq1  GCAGTCCCTGAGCTCAGTCTGATGATTGGCTGTGAACATCCGCCTTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCCCTGAGCTCAGTCTGATGATTGGCTGTGAACATCCGCCTTTACA  50

seq1  AAAAATGGAGAAGAAACTGAAGGAGGAAGGGCCATCTGGGGACTACACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGAGAAGAAACTGAAGGAGGAAGGGCCATCTGGGGACTACACCA  100

seq1  CCTGGGATTCCATCCTGTCTGCAGACACCAAATCCTGAGACTGTTGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGATTCCATCCTGTCTGCAGACACCAAATCCTGAGACTGTTGCTGT  150

seq1  TGCCAAGAGGCACTGGCTGACAGGAACCTGGTGTGGCTGTTCCCTCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGAGGCACTGGCTGACAGGAACCTGGTGTGGCTGTTCCCTCAGAG  200

seq1  GTTCTGCCAGCACCTGATCAATGATCAGTTTATTTAAAAAAAAATTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCCAGCACCTGATCAATGATCAGTTTATTTAAAAAAAAATTAAAT  250

seq1  AAATAAAACAATTAATTAAAAGGCTGGAGAAATGGCTCAGCAATTACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACAATTAATTAAAAGGCTGGAGAAATGGCTCAGCAATTACAAG  300

seq1  CATTTGCTACTCTTGTAAAGAACCCATGTTTAATTCTCAGAATGCACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTACTCTTGTAAAGAACCCATGTTTAATTCTCAGAATGCACATG  350

seq1  ATAGACTATAGCTACCCATAACTCCAGTTCCAGGAAATCTGGAACTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTATAGCTACCCATAACTCCAGTTCCAGGAAATCTGGAACTATAA  400

seq1  GAAAAATGGTACATAAAATAAATGATGAACAAATAATGAATAAACATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGGTACATAAAATAAATGATGAACAAATAATGAATAAACATACT  450

seq1  TGCAAACAAAACACTTAAACAATAAAATCAAATTAAATTAAAACATGTAA  500
      ||||||| |||||||| |||||||||||| |||||||||||||||||| |
seq2  TGCAAAC-AAACACTTTAACAATAAAATC-AATTAAATTAAAACATGT-A  497

seq1  ATACAAATATATACTGAGCTTTAAAAGATTGTATAACCAAAGTTTTAAAG  550
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  ATACAAATATATACTGAGCTTTAAAAGATTGTAT-ACCAAAGTTTT-AAG  545

seq1  GATACAGGCTGATTTCTACCCTTTGACAGCTCAAGAGTAAACATATTATG  600
      |||||||||||||||||| ||||||||||||| ||||||||||| |||||
seq2  GATACAGGCTGATTTCTA-CCTTTGACAGCTC-AGAGTAAACAT-TTATG  592

seq1  TTAAAGAAGCACATTGTATTTCCTGGAAAACTCCAATTCCATTTATTCTT  650
      ||||   ||||| |||||||||||||  |||| |||||||||||||||| 
seq2  TTAA--GAGCACTTTGTATTTCCTGG--AACT-CAATTCCATTTATTCT-  636

seq1  AATTAGTAAGAATTCATATAATGAAACCACTGAATGCTGAAGACAGAGAC  700
       ||||   ||||||| ||||  |  | |||||||||||| ||||||||||
seq2  -ATTA--TAGAATTC-TATATGG--ATCACTGAATGCTG-AGACAGAGAC  679