BAC Information

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BAC

Clone NameB6Ng01-039F18
Chromosome14 (Build37)
Map Location 77,105,687 - 77,231,905
singlet/doubletdoublet
Overlap genenone
Upstream geneCog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik
Downstream geneLOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755, LOC676171, EG629678, Gm1587, Dnajc15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039F18.bB6Ng01-039F18.g
ACCDH866651DH866652
length1,0961,118
definitionDH866651|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F18, 5' end.DH866652|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,230,787 - 77,231,905)(77,105,687 - 77,106,822)
sequence
gaattctcttctactgaaataggttaaaatctggacgaggatttcaaaat
aaaaataatcaccagccacgatgatgacacaagcaagagaaggaattcaa
ataaagacttggagaaacaagtcggcaacattaaaatgtcagcaaaatcg
atggaaaaaagaaaaacaatgtggatttaaaaaaatcaataacatgaaag
agtcagcaaggaaattgagatttgaaagaaaaacaaaataggtttggaaa
tgaaacactccaagaaccaaataagcatcgccaacagactagaccaagca
gaagaaaggatgtcacggagggagcaacaggataaaatagtataagcatt
aaatactacattcaacagcaataaggaaaaaataaatgagcatgcccacg
gtttataaggactcagagacaaaatcaggagctcaaacctgagagtacgt
gagacaaagggggatctggaatataggcttaagacacgatagaagaaaat
ttccaatctagagaaagaaatagatatccagtcacaagaggcatttagga
tccaggacaggggcaactagagaagaacctctccgcgatatattagtcag
gatgtgaaaagcataaagctgtcagggaaggacaccaactcaactgaaaa
aggcaacatctcagcatgaatcaggcctcttccgcaccctagaaactcag
ggaagcatgaacacatccctgagagtgaggaactgcccaccaaagctgcg
atgtgcagtaaagcgagcttgtaaaattgatggagaaataagaacatgtc
gagatcatcacaaaccacagcattccaggaccatcaatcccagcgcttca
gaaggcacctaataaatactgtgcacctttcaggaagagggacaaaccca
cggaacctttaaagtagaccacattccaggccaaaagcaagtcttcacaa
agaagtaaataatttactatatctacagatcatattgaaactcaaaatca
caagacaggtgacagaaactcgacaagacttgagcagcccataggataca
ggggccatgcaaatcatgaggaaactcaaagtcctagacaatgaaa
gaattctttctcgtggcacttaccttggacagtataaatatcccctcatt
tcatcttagaaagatctacctaatagaaaggaaactaagactgcattttt
gatccaaagcaaaggcaggttctggactccgcaggcttctgacaggccgg
gcaaccatgaaagctgggagagaaaggtctgccgctttcccagggagttg
tggagggagcgagcccgtccatattcccaggactttccaagggccggctc
tatgtaaacagaaggtattgttccacttgccacccataattagaaagaaa
acacattatgaaacgttaaaatactaggactctgaatcctgggtaatcag
tgccacggacattcgccagagtgcaggggacatgtgtgaagggccacctg
cttccctgagccaaactctttttccttgacaataagtctgaatcctgaat
ctacacatggattggtctctggcagtggggacggctgtggagaacccatt
ctctcttagaacaccccagtttctagaaccctccatggaaggtttcactg
aaggcaagatctaacaaaggaaacgaggtgaagtagagtctctgggaaga
cttgggctggaaacttcttttgccaggccatctggtgggtctgcacatca
ctgtgtctgtgggtcctggagttggtaagcttttattgatagctctctga
ggagttacaatttgttgctcacaatacaataccttctgagactgcgatga
ttgtgtggtccccagttacctgtgaaatctcttttgcacagttaaagcaa
ggagacactatcttgcttttttttttttttctacaagaatgtttcacacc
tccatggctgcgagggagaattatgggaggtgggagaaagagcggaaaca
gcttgctggagagagaagtctcacacagtaggatgttttttggtccccaa
gagatagaatgagccacacatctttacccacattcctagaaattccagtc
tgaatagtgggcatgctcagttaatattacactgtgatccacaccatgat
ataactgcacactgatgactaattgatctttagcattaaccgctagcaag
cacctgtgtgctcttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_77230787_77231905
seq2: B6Ng01-039F18.b_39_1134 (reverse)

seq1  TTTCATTTGGTTCTAGGGACTTTTGAGTTTCCTCCATGATTTTGCCAATG  50
      |||||||    |||| |||| |||||||||||| ||||| |||||  |||
seq2  TTTCATT---GTCTA-GGAC-TTTGAGTTTCCT-CATGA-TTTGC--ATG  41

seq1  GCCCCCTTGTTATTCTTATTGGGCTGCCTTCAAGTCTTTGTCGAGTTTCT  100
      |||||  || ||| ||   ||||||||  ||||||| |||||||||||||
seq2  GCCCC--TG-TATCCT--ATGGGCTGC--TCAAGTC-TTGTCGAGTTTCT  83

seq1  GTCACCTGTCTTGTTGATTTTGAGTTTCAATATGATCTTGTAAGATATAG  150
      ||||||||||||| ||||||||||||||||||||||| ||| ||||||||
seq2  GTCACCTGTCTTG-TGATTTTGAGTTTCAATATGATC-TGT-AGATATAG  130

seq1  TAAATTATTTTACTTCTTTTGTGAAGACTTGCTTTTTGGCCTGGAATGTG  200
      ||||||| |||||||| ||||||||||||||| |||||||||||||||||
seq2  TAAATTA-TTTACTTC-TTTGTGAAGACTTGC-TTTTGGCCTGGAATGTG  177

seq1  GTCTACTTTAAAGGTTCCGTGGGTTTGTCCCTCTTCCTGAAAGGTGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTTTAAAGGTTCCGTGGGTTTGTCCCTCTTCCTGAAAGGTGCACA  227

seq1  GTATTTATTAGGTGCCTTCTGAAGCGCTGGGATTGATGGTCCTGGAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATTAGGTGCCTTCTGAAGCGCTGGGATTGATGGTCCTGGAATGC  277

seq1  TGTGGTTTGTGATGATCTCGACATGTTCTTATTTCTCCATCAATTTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTGTGATGATCTCGACATGTTCTTATTTCTCCATCAATTTTACA  327

seq1  AGCTCGCTTTACTGCACATCGCAGCTTTGGTGGGCAGTTCCTCACTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGCTTTACTGCACATCGCAGCTTTGGTGGGCAGTTCCTCACTCTCA  377

seq1  GGGATGTGTTCATGCTTCCCTGAGTTTCTAGGGTGCGGAAGAGGCCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTGTTCATGCTTCCCTGAGTTTCTAGGGTGCGGAAGAGGCCTGAT  427

seq1  TCATGCTGAGATGTTGCCTTTTTCAGTTGAGTTGGTGTCCTTCCCTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTGAGATGTTGCCTTTTTCAGTTGAGTTGGTGTCCTTCCCTGACA  477

seq1  GCTTTATGCTTTTCACATCCTGACTAATATATCGCGGAGAGGTTCTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATGCTTTTCACATCCTGACTAATATATCGCGGAGAGGTTCTTCTC  527

seq1  TAGTTGCCCCTGTCCTGGATCCTAAATGCCTCTTGTGACTGGATATCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGCCCCTGTCCTGGATCCTAAATGCCTCTTGTGACTGGATATCTAT  577

seq1  TTCTTTCTCTAGATTGGAAATTTTCTTCTATCGTGTCTTAAGCCTATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTCTAGATTGGAAATTTTCTTCTATCGTGTCTTAAGCCTATATT  627

seq1  CCAGATCCCCCTTTGTCTCACGTACTCTCAGGTTTGAGCTCCTGATTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCCCCCTTTGTCTCACGTACTCTCAGGTTTGAGCTCCTGATTTTG  677

seq1  TCTCTGAGTCCTTATAAACCGTGGGCATGCTCATTTATTTTTTCCTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGTCCTTATAAACCGTGGGCATGCTCATTTATTTTTTCCTTATT  727

seq1  GCTGTTGAATGTAGTATTTAATGCTTATACTATTTTATCCTGTTGCTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGAATGTAGTATTTAATGCTTATACTATTTTATCCTGTTGCTCCC  777

seq1  TCCGTGACATCCTTTCTTCTGCTTGGTCTAGTCTGTTGGCGATGCTTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGACATCCTTTCTTCTGCTTGGTCTAGTCTGTTGGCGATGCTTATT  827

seq1  TGGTTCTTGGAGTGTTTCATTTCCAAACCTATTTTGTTTTTCTTTCAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTTGGAGTGTTTCATTTCCAAACCTATTTTGTTTTTCTTTCAAAT  877

seq1  CTCAATTTCCTTGCTGACTCTTTCATGTTATTGATTTTTTTAAATCCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTTCCTTGCTGACTCTTTCATGTTATTGATTTTTTTAAATCCACA  927

seq1  TTGTTTTTCTTTTTTCCATCGATTTTGCTGACATTTTAATGTTGCCGACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCTTTTTTCCATCGATTTTGCTGACATTTTAATGTTGCCGACT  977

seq1  TGTTTCTCCAAGTCTTTATTTGAATTCCTTCTCTTGCTTGTGTCATCATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCCAAGTCTTTATTTGAATTCCTTCTCTTGCTTGTGTCATCATC  1027

seq1  GTGGCTGGTGATTATTTTTATTTTGAAATCCTCGTCCAGATTTTAACCTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGGTGATTATTTTTATTTTGAAATCCTCGTCCAGATTTTAACCTA  1077

seq1  TTTCAGTAGAAGAGAATTC  1119
      |||||||||||||||||||
seq2  TTTCAGTAGAAGAGAATTC  1096

seq1: chr14_77105687_77106822
seq2: B6Ng01-039F18.g_67_1184

seq1  GAATTCTTTCTCGTGGCACTTACCTTGGACAGTATAAATATCCCCTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCGTGGCACTTACCTTGGACAGTATAAATATCCCCTCATT  50

seq1  TCATCTTAGAAAGATCTACCTAATAGAAAGGAAACTAAGACTGCATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTAGAAAGATCTACCTAATAGAAAGGAAACTAAGACTGCATTTTT  100

seq1  GATCCAAAGCAAAGGCAGGTTCTGGACTCCGCAGGCTTCTGACAGGCCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAAAGCAAAGGCAGGTTCTGGACTCCGCAGGCTTCTGACAGGCCGG  150

seq1  GCAACCATGAAAGCTGGGAGAGAAAGGTCTGCCGCTTTCCCAGGGAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCATGAAAGCTGGGAGAGAAAGGTCTGCCGCTTTCCCAGGGAGTTG  200

seq1  TGGAGGGAGCGAGCCCGTCCATATTCCCAGGACTTTCCAAGGGCCGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGAGCGAGCCCGTCCATATTCCCAGGACTTTCCAAGGGCCGGCTC  250

seq1  TATGTAAACAGAAGGTATTGTTCCACTTGCCACCCATAATTAGAAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAACAGAAGGTATTGTTCCACTTGCCACCCATAATTAGAAAGAAA  300

seq1  ACACATTATGAAACGTTAAAATACTAGGACTCTGAATCCTGGGTAATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTATGAAACGTTAAAATACTAGGACTCTGAATCCTGGGTAATCAG  350

seq1  TGCCACGGACATTCGCCAGAGTGCAGGGGACATGTGTGAAGGGCCACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACGGACATTCGCCAGAGTGCAGGGGACATGTGTGAAGGGCCACCTG  400

seq1  CTTCCCTGAGCCAAACTCTTTTTCCTTGACAATAAGTCTGAATCCTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTGAGCCAAACTCTTTTTCCTTGACAATAAGTCTGAATCCTGAAT  450

seq1  CTACACATGGATTGGTCTCTGGCAGTGGGGACGGCTGTGGAGAACCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACATGGATTGGTCTCTGGCAGTGGGGACGGCTGTGGAGAACCCATT  500

seq1  CTCTCTTAGAACACCCCAGTTTCTAGAACCCTCCATGGAAGGTTTCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTAGAACACCCCAGTTTCTAGAACCCTCCATGGAAGGTTTCACTG  550

seq1  AAGGCAAGATCTAACAAAGGAAACGAGGTGAAGTAGAGTCTCTGGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGATCTAACAAAGGAAACGAGGTGAAGTAGAGTCTCTGGGAAGA  600

seq1  CTTGGGCTGGAAACTTCTTTTGCCAGGCCATCTGGTGGGTCTGCACATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTGGAAACTTCTTTTGCCAGGCCATCTGGTGGGTCTGCACATCA  650

seq1  CTGTGTCTGTGGGTCCTGGAGTTGGTAAGCTTTTATTGATAGCTCTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTGTGGGTCCTGGAGTTGGTAAGCTTTTATTGATAGCTCTCTGA  700

seq1  GGAGTTACAATTTGTTGCTCACAATACAATACCTTCTGAGACTGCGATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTACAATTTGTTGCTCACAATACAATACCTTCTGAGACTGCGATGA  750

seq1  TTGTGTGGTCCCCAGTTACCTGTGAAATCTCTTTTGCACAGTTAAAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGGTCCCCAGTTACCTGTGAAATCTCTTTTGCACAGTTAAAGCAA  800

seq1  GGAGACACTATCTTGC-TTTTTTTTTTTTTCTACAAGAATGTTTCACACC  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGAGACACTATCTTGCTTTTTTTTTTTTTTCTACAAGAATGTTTCACACC  850

seq1  TCCATGGCTGCGAGGGAGAATTATGGGAGGTGGGAGAAAGAGCGGAAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGCTGCGAGGGAGAATTATGGGAGGTGGGAGAAAGAGCGGAAACA  900

seq1  GCTTGCTGGAGAGAGAAGTCTCACACAGTAGGATGTTTTTTGGTCCCCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTGGAGAGAGAAGTCTCACACAGTAGGATGTTTTTTGGTCCCCAA  950

seq1  AGAAGATAGAATGGAGCCACACCATCTTTACCCACCATTCCTAGAAATTT  999
         ||||||||| |||||||| |||||||||||| |||||||||||| ||
seq2  --GAGATAGAAT-GAGCCACA-CATCTTTACCCA-CATTCCTAGAAA-TT  994

seq1  CCAGTCTTGAAATTAGTGGGCATGCT-AGTTAATATTAACAACTGTGAT-  1047
      |||||| ||||  ||||||||||||| |||||||||||   |||||||| 
seq2  CCAGTC-TGAA--TAGTGGGCATGCTCAGTTAATATTA--CACTGTGATC  1039

seq1  CACACCAATGATAATAACATGCACACTGATGACATAATGATCTTTAAGCA  1097
      |||||| ||||| ||||| ||||||||||||||  | |||||||| ||||
seq2  CACACC-ATGAT-ATAAC-TGCACACTGATGACTAATTGATCTTT-AGCA  1085

seq1  TTTAACACGTTAGCAAGCACTCTGTGTGTGCTGCTTCAT  1136
       ||||| || ||||||||||    |||||||| ||||||
seq2  -TTAAC-CGCTAGCAAGCAC---CTGTGTGCT-CTTCAT  1118