BAC Information

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BAC

Clone NameB6Ng01-039F21
Chromosome14 (Build37)
Map Location 43,745,486 - 43,768,297
singlet/doubletdoublet
Overlap geneLOC100041069, EG666420
Upstream geneLOC666233, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893
Downstream geneLOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039F21.bB6Ng01-039F21.g
ACCDH866657DH866658
length1,021501
definitionDH866657|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F21, 5' end.DH866658|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,745,486 - 43,746,170)(43,767,795 - 43,768,297)
sequence
gaattcctcccttccaatttgtatcactttgatcggcatttttgcctgat
ttctctggctaaaatgtcaaagactatgttgaatacataggggaagaggg
ggaagtctttccttgtctctgattttaatgggatggcttcaaatttttct
ccatatattttgatgttggcaactgagttgctctattttgctcatttctt
attgaaacgtgactttctgattcctccactacatttatcttgaagttata
ttgtattttgtcaaacactttttcagcatcttaagagattatccaatata
ttttaagttattttatatagtggattacattgatggatgtccatatattg
aatcattcctgcatccgtgggatgatacagtatctaatgagatgatcaaa
taataatttcttaaattaattacatagtatattactttgatgaattccaa
aacattgaatcattcttacatcctatacatgatgcatattggatcatggt
gagtgatcatttgcatgtgttattagaaacagtttccaagacgttattga
gtatttttgcatcaatatttgttatggtttttatatgctcaacccactga
gtggcaacataagaaggagtggccaagttagagtatatgggacactgtgt
gtgtggtcaaaaccctcaccctagctgcctggacattaatgttctattag
cacacttcacatgaccatgtaggactctcaacttctcctctaccatgcct
ttctggatgcgtccatgtggccaccttgttggtacttgactgatcctctt
aacctgtaatgcatccacattgaattctatgagaagctgcagtgcagcca
gatttggaggagtccaataccctcctgggacaactagtcatggatttgta
atcatccatccatctgcagcactggggtgtcttcagagtcacatctcttc
tctaagcttggagaccacctgactgaggtcagaagctctatgagcatctg
ctgatgcacagttagaaacag
gaattctcctggtgcctcagccctgccacctagaggatggtggagagctg
catgccctcctcactggtctgcactcacaagtgcttcagattcatgaaga
ggcagcctttcttcaagtcgcgggccttgaacaccttcccttaggcgcct
tagtggatctccttcaggcactcatactgctgatcagagcgacttaagct
gtccatctccatgctggctgcaggctgcaggcatgacacagtggaaccgg
gcgcagctgcagtgaatctccacctagccaagttgctgcaccttgctggt
gctgcaggagagcgccaatccctcctcttccccctcctcagcgattacaa
agtctgcccacaatttctgcacctaggaggaggagactggaggacaagga
gaaagtgtgatcagactgcccaggagacttccaccgggttccaccagctc
ccctcctcctcccctctactcgggttccaccacctcccctccaccccctc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43745486_43746170
seq2: B6Ng01-039F21.b_386_1060

seq1  ATTGAATCATTCCTGCATCCGTGGGATGATACAGTATCTAATGAGATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATCATTCCTGCATCCGTGGGATGATACAGTATCTAATGAGATGAT  50

seq1  CAAATAATAATTTCTTAAATTAATTACATAGTATATTACTTTGATGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATAATTTCTTAAATTAATTACATAGTATATTACTTTGATGAATT  100

seq1  CCAAAACATTGAATCATTCTTACATCCTATACATGATGCATATTGGATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACATTGAATCATTCTTACATCCTATACATGATGCATATTGGATCA  150

seq1  TGGTGAGTGATCATTTGCATGTGTTATTAGAAACAGTTTCCAAGACGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGTGATCATTTGCATGTGTTATTAGAAACAGTTTCCAAGACGTTA  200

seq1  TTGAGTATTTTTGCATCAATATTTGTTATGGTTTTTATATGCTCAACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTATTTTTGCATCAATATTTGTTATGGTTTTTATATGCTCAACCCA  250

seq1  CTGAGTGGCAACATAAGAAGGAGTGGCCAAGTTAGAGTATATGGGACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGGCAACATAAGAAGGAGTGGCCAAGTTAGAGTATATGGGACACT  300

seq1  GTGTGTGTGGTCAAAACCCTCACCCTAGCTGCCTGGACATTAATGTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGGTCAAAACCCTCACCCTAGCTGCCTGGACATTAATGTTCTA  350

seq1  TTAGCAGACTTCACATGACCATGTAGGACTCTCAGCTTCTCCTCTACCAT  400
      |||||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  TTAGCACACTTCACATGACCATGTAGGACTCTCAACTTCTCCTCTACCAT  400

seq1  GCCTTTCTGGATGCGTCCATGTGGCCACCTTGTTGGTACTTGACTGATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTGGATGCGTCCATGTGGCCACCTTGTTGGTACTTGACTGATCC  450

seq1  TCTTAACCTGTAAGGCATCCACATTGAATTCTAGGAGAAGCTGCAGTGCA  500
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  TCTTAACCTGTAATGCATCCACATTGAATTCTATGAGAAGCTGCAGTGCA  500

seq1  GCCAGATTTGGAGGAGTCCCAAAACCCTCCTGGGACAACTAGTCATGGAG  550
      ||||||||||||||||| |||| |||||||||||||||||||||||||| 
seq2  GCCAGATTTGGAGGAGT-CCAATACCCTCCTGGGACAACTAGTCATGGA-  548

seq1  TTTGTTCAGCAGCCATCCATCTGCAGCAGTTAGGGTGTTCTTCAGAGTCA  600
      |||| | | || ||||||||||||||||  | ||||| ||||||||||||
seq2  TTTG-TAATCATCCATCCATCTGCAGCA-CTGGGGTG-TCTTCAGAGTCA  595

seq1  CATCTCTTCTCTAAAGCTTTGAAGAACCACCTGTCTGAGGGCCAGAAGCT  650
      |||||||||||| |||||| ||   |||||||| |||| || ||||||||
seq2  CATCTCTTCTCT-AAGCTTGGA--GACCACCTGACTGA-GGTCAGAAGCT  641

seq1  CTTGTGAGTATCTGCTGATGCAGAGTTAGAAACAG  685
      | | |||| ||||||||||||| ||||||||||||
seq2  C-TATGAGCATCTGCTGATGCACAGTTAGAAACAG  675

seq1: chr14_43767795_43768297
seq2: B6Ng01-039F21.g_64_564 (reverse)

seq1  AGAGGGGAGGAGGAGGGGAGCTGGTGGAACCCGAGTAGAGGGGAGGAGGA  50
      ||||||  || ||||||||| |||||||||||||||||||||||||||||
seq2  AGAGGG--GGTGGAGGGGAGGTGGTGGAACCCGAGTAGAGGGGAGGAGGA  48

seq1  GGGGAGCTGGTGGAACCCGGTGGAAGTCTCCTGGGCAGTCTGATCACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCTGGTGGAACCCGGTGGAAGTCTCCTGGGCAGTCTGATCACACT  98

seq1  TTCTCCTTGTCCTCCAGTCTCCTCCTCCTAGGTGCAGAAATTGTGGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTGTCCTCCAGTCTCCTCCTCCTAGGTGCAGAAATTGTGGGCAG  148

seq1  ACTTTGTAATCGCTGAGGAGGGGGAAGAGGAGGGATTGGCGCTCTCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAATCGCTGAGGAGGGGGAAGAGGAGGGATTGGCGCTCTCCTGC  198

seq1  AGCACCAGCAAGGTGCAGCAACTTGGCTAGGTGGAGATTCACTGCAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAGCAAGGTGCAGCAACTTGGCTAGGTGGAGATTCACTGCAGCTG  248

seq1  CGCCCGGTTCCACTGTGTCATGCCTGCAGCCTGCAGCCAGCATGGAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCGGTTCCACTGTGTCATGCCTGCAGCCTGCAGCCAGCATGGAGATG  298

seq1  GACAGCTTAAGTCGCTCTGATCAGCAGTATGAGTGCCTGAAGGAGATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTTAAGTCGCTCTGATCAGCAGTATGAGTGCCTGAAGGAGATCCA  348

seq1  CTAAGGCGCCTAAGGGAAGGTGTTCAAGGCCCGCGACTTGAAGAAAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCGCCTAAGGGAAGGTGTTCAAGGCCCGCGACTTGAAGAAAGGCT  398

seq1  GCCTCTTCATGAATCTGAAGCACTTGTGAGTGCAGACCAGTGAGGAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTCATGAATCTGAAGCACTTGTGAGTGCAGACCAGTGAGGAGGGC  448

seq1  ATGCAGCTCTCCACCATCCTCTAGGTGGCAGGGCTGAGGCACCAGGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCTCTCCACCATCCTCTAGGTGGCAGGGCTGAGGCACCAGGAGAA  498

seq1  TTC  503
      |||
seq2  TTC  501