BAC Information

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BAC

Clone NameB6Ng01-039J22
Chromosome14 (Build37)
Map Location 52,905,830 - 52,906,989
singlet/doubletsinglet
Overlap geneTox4
Upstream geneLOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b
Downstream geneMettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039J22.bB6Ng01-039J22.g
ACCDH866841DH866842
length1,1861,138
definitionDH866841|Mus musculus domesticus DNA, BAC clone: B6Ng01-039J22, 5' end.DH866842|Mus musculus domesticus DNA, BAC clone: B6Ng01-039J22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattctttttaatagctgagtagtactccattgtgtaaatgtacc
acgtttttttttttatccattcctctgttgaggggcatctgggttctttc
cagcttctggctattataaataaggctgctatgaacatagtggagcatgt
gcccttcttactggttgggacatcttctggatatatgcccaggagaggta
ttgtgggatcctccagtagtactatgtccaattttctgaggaaccgccag
actgatttctagagtggttgtacaagcttgcaatctcaccaacaatgaag
gagtgttcctctttatccacatcctcaccagcatctgctggcacctgaat
ttttgatcttagccattctgactggtgtgaggtggaatctcagggttgtt
ttgatttgcatttccctgatgattaaggatgctgagcattttttcaggtg
cttctcagccattcggtattcctcaggtgagaattctttgtttagctctg
agccccattttttaatggggttatttgattttctggagtccaccttcttg
agttctttatatatattggatattagtcccctatctgatttaggataggt
aaagatcctttcccaatctgttggtggcctttttgtcttattgacggtgt
cttttgccttgcagaagctttgcaattttatgaggtcccatttgtagatt
ctcgatcttacagcacaagccattgctgttctattcaggaatttttcccc
tgtacccatatcttcgaggcttttccctactttctcctctataagtttca
gtgtctctggttttatgtggagttccttaatccacttagatttgacctta
gtacaaggagataggaatgcatcaattcacattcttctacatgataaccg
ccagttgtgccagcaccatttgttgaagatgctgtcttttttcagtggat
ggtttttgcttccttgtcaagaacaagtgaccaaaggtgatagggtcatt
tctgggcttcaattcattccattggtctacttgtcgtcgcgtaaccagaa
catgtagtttatcaagtgttctgtgatcaggcttaagtcggcatgtgaat
ccacaaggttctttatctgagaagattgcatcaggctttggtatcaagat
gcgatgccctcatttgcgaaatagtgaatgagagat
gaattctaatgtgtaagtgtcacattgcgtgatttattaaaaaatgggct
ggaccaactatagtaattgtagactgataccataaacgtttatggtttcc
agcactttgtcagtatcacatctccatgtcgtgtgtttgatgacagacat
ctgtctgcacttcagcttctctgctctcattgcccatgcattgcaacttt
aaaaacgtattctagaaatacaagtgggtttagcttgtatgctgtatagt
cccaaggattgtggggaatgaattgtccttttctgtttttgagataggtt
ctcactatgtagccctaactgacttagaattcacataggtagatcaggct
agccaaactcagagatttcaccatctgcctcttatctcctgagtgttgga
attcagggcaggtaataccacacctggcctcctaacatggtttttatgca
gacagattatctgatgttctgtaggatttaaatgatgggagtatatggaa
gcccaggggtttataaggaaggggacatggtattttaatatttagtgttt
aattagtttttctgtttctctcaggacctggaccattctataggaactca
gtatagtgccaacccacctgttacaattgatgtaccaatgacagacatga
catctggcttaatgggacacagccagttgaccactattgatcagtcagaa
ctgagttctcaacttggtttgagtttaggaggtggcaccatcttgccacc
tgcccagtcacctgaggatcgtctttcaactactccttcacctaccaatt
cacttcatgaggatggtgttgatgatttccggagggtgaggcattccctg
ccaaagtcaactctgttatcctagggcaaaatgcttgtcgtataaaggct
agtccatcttcacttgatgctgggctctgtctcaattactgttcttagtg
atcctcaaataagactctcaaaccattgcttccggttttagcttaaatgc
acggccttaggctgctttccttcctcacggctaaacatctctccagcctg
attgccctatcaaccttttctaaagtctcagaacagtacttcccttctgc
actttaattctctcattttttcctgacaattccgccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_52905830_52906989
seq2: B6Ng01-039J22.g_66_1203

seq1  GAATTCTAATGTGTAAGTGTCACATTGCGTGATTTATTAAAAAATGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGTGTAAGTGTCACATTGCGTGATTTATTAAAAAATGGGCT  50

seq1  GGACCAACTATAGTAATTGTAGACTGATACCATAAACGTTTATGGTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAACTATAGTAATTGTAGACTGATACCATAAACGTTTATGGTTTCC  100

seq1  AGCACTTTGTCAGTATCACATCTCCATGTCGTGTGTTTGATGACAGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTGTCAGTATCACATCTCCATGTCGTGTGTTTGATGACAGACAT  150

seq1  CTGTCTGCACTTCAGCTTCTCTGCTCTCATTGCCCATGCATTGCAACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCACTTCAGCTTCTCTGCTCTCATTGCCCATGCATTGCAACTTT  200

seq1  AAAAACGTATTCTAGAAATACAAGTGGGTTTAGCTTGTATGCTGTATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACGTATTCTAGAAATACAAGTGGGTTTAGCTTGTATGCTGTATAGT  250

seq1  CCCAAGGATTGTGGGGAATGAATTGTCCTTTTCTGTTTTTGAGATAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGATTGTGGGGAATGAATTGTCCTTTTCTGTTTTTGAGATAGGTT  300

seq1  CTCACTATGTAGCCCTAACTGACTTAGAATTCACATAGGTAGATCAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTATGTAGCCCTAACTGACTTAGAATTCACATAGGTAGATCAGGCT  350

seq1  AGCCAAACTCAGAGATTTCACCATCTGCCTCTTATCTCCTGAGTGTTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAACTCAGAGATTTCACCATCTGCCTCTTATCTCCTGAGTGTTGGA  400

seq1  ATTCAGGGCAGGTAATACCACACCTGGCCTCCTAACATGGTTTTTATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGGCAGGTAATACCACACCTGGCCTCCTAACATGGTTTTTATGCA  450

seq1  GACAGATTATCTGATGTTCTGTAGGATTTAAATGATGGGAGTATATGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATTATCTGATGTTCTGTAGGATTTAAATGATGGGAGTATATGGAA  500

seq1  GCCCAGGGGTTTATAAGGAAGGGGACATGGTATTTTAATATTTAGTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGGGTTTATAAGGAAGGGGACATGGTATTTTAATATTTAGTGTTT  550

seq1  AATTAGTTTTTCTGTTTCTCTCAGGACCTGGACCATTCTATAGGAACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTTTTCTGTTTCTCTCAGGACCTGGACCATTCTATAGGAACTCA  600

seq1  GTATAGTGCCAACCCACCTGTTACAATTGATGTACCAATGACAGACATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTGCCAACCCACCTGTTACAATTGATGTACCAATGACAGACATGA  650

seq1  CATCTGGCTTAATGGGACACAGCCAGTTGACCACTATTGATCAGTCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGCTTAATGGGACACAGCCAGTTGACCACTATTGATCAGTCAGAA  700

seq1  CTGAGTTCTCAACTTGGTTTGAGTTTAGGAGGTGGCACCATCTTGCCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCTCAACTTGGTTTGAGTTTAGGAGGTGGCACCATCTTGCCACC  750

seq1  TGCCCAGTCACCTGAGGATCGTCTTTCAACTACTCCTTCACCTACCAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGTCACCTGAGGATCGTCTTTCAACTACTCCTTCACCTACCAATT  800

seq1  CACTTCATGAGGATGGTGTTGATGATTTCCGGAGGGTGAGGCATTCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCATGAGGATGGTGTTGATGATTTCCGGAGGGTGAGGCATTCCCTG  850

seq1  CCAAAGTCAACTCTGTTATCCTAGGGCAAAATGCTTGTCGTATAAAGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTCAACTCTGTTATCCTAGGGCAAAATGCTTGTCGTATAAAGGCT  900

seq1  AGTCCATCTTCACTTGATGCTGGGCTCTTGTCTCAATTACTGTTCTTAGT  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGTCCATCTTCACTTGATGCTGGGCTC-TGTCTCAATTACTGTTCTTAGT  949

seq1  GATCCTCAAATAAGACTCTCAAAACCATTGCTTCCGGTTTTAGCTTAAAT  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GATCCTCAAATAAGACTCTC-AAACCATTGCTTCCGGTTTTAGCTTAAAT  998

seq1  GCCACGG-CTATGGCTGCTTTCCCTCCCTCACTGCTAAGCCATCTCTCCA  1049
      | ||||| ||  ||||||||| ||| |||||| |||||  ||||||||||
seq2  G-CACGGCCTTAGGCTGCTTT-CCTTCCTCACGGCTAA-ACATCTCTCCA  1045

seq1  GCCTGGTTTGCCCTATCAAACCCCTTTCTTAAAGTTCTCCAGGACCAGTA  1099
      |||| | ||||||||||||   |||||  ||||| ||||   || |||||
seq2  GCCT-GATTGCCCTATCAA---CCTTTTCTAAAG-TCTC--AGAACAGTA  1088

seq1  CTTCCCTTCTGCCATCTTTTAATTCTCTCCATTTTTCTCCCTGACAGCAA  1149
      ||||||||||||     ||||||||||||  |||||   |||||||    
seq2  CTTCCCTTCTGC---ACTTTAATTCTCTCATTTTTT---CCTGACA----  1128

seq1  CTTCCCGCCCA  1160
        | |||||||
seq2  -ATTCCGCCCA  1138