BAC Information

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BAC

Clone NameB6Ng01-039N20
Chromosome14 (Build37)
Map Location 14,920,271 - 14,921,420
singlet/doubletsinglet
Overlap geneAtxn7
Upstream geneEG328354, Synpr, A430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7
Downstream genePsmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7, Nek10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039N20.bB6Ng01-039N20.g
ACCDH867006DH867007
length7461,139
definitionDH867006|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N20, 5' end.DH867007|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagagcaagccattgctgtt
ctgttcaggaatttttacacccttggaaggagttacagagacaaagtttg
gagctgagataaaaggatggaccatgtagacactaccatatccggggatc
catcccataatcagcttccaaatgctgacaccattgcatacactagcaag
attatgctgaaaggaccctgatatagctgtctcttgtcagagtatgcctg
ggcctagcaaacatagaagtggatgctcacagtcggctattggatggatc
acatggcccccaatgaaggagctagagaaagtaccaaagaagctaaaggg
atctgcaaccctataggtggaacaacattatgaactaaccagtaccccgg
agctcttgactctagctgcatatgcatcaaaagatggcctagccggccat
cactggaaagagaggcccattggacacgcaaactttatatgccccagtac
aggggaacgccagggccataaaaggggagtgggtgggtaggggaga
gaattccagaagaatccctcacaagagccatcatgttaatgaaagaaatt
attaaacaaggagagtatgagtcacggaagccctctgagaacttaaatgc
agacacctaacaccgcactgaatgtcccctgaagccactctgctgctgcc
aacaagtaagccttgaatcagtacatcctgtgtcaccatttaggcactcc
aatccctcaacacaggcttctatgacaccagcataggacagaggcaaccg
gcaaccagttgataagcaggaagacccatgccactaacaaagcaacttct
cttattatcttaccgacactgttatattgcctagtaaaagtgatgtcagc
aaaaccctaaggcttcactcgacagtggatccttggataagtgcttgcaa
actctagtgcagtctgtactctaatagctgttaaactgccaagtgacttc
aacattgccctgctgtttctgtggttttcagacagctaagccagatagtg
aaagccaggtttcctgtgctcgttctcaatgagcaggggctgggggctca
gcaaccagaacagagtgcgctgaagagctattcctggaacagccttacaa
cagcccagtcactgcaaactcctctcacctcacccagttagcaaagtcct
tgtgcagtagcaggtacccgactgctttctgagataaccaaggttatgag
acattggggataaaatggacggcatattctcccccaaaaagggaagcagg
ccaaggaaacactacttgccatcaggttgcgagatatcatgacaaagcaa
gataaacttcaaccacagtatactgctcttcttccacgtgacctcaaaaa
agctcctagctccagacccacttcagtagctagtcaaagaaaccacggaa
atgagactccttctagtctttcccctcactgctgtgacttagaaaccctg
atgccttagaccctgcctcacttccaccaggaagacaatagaagtcggat
tcaaacccagacctctccgacttaagacctcataaagcactgcgcacagg
cttcctttcccatggttgaaaaggggacaacatgcagactcacaggattg
tggtggccattcatggcatccagacagaatagctcagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_14920271_14921420
seq2: B6Ng01-039N20.g_68_1206 (reverse)

seq1  AACTGAGCTATATCTGTCTGTGATGCCATGAATTGGCCACAGCATCCCTG  50
      ||||||||||| |||||||| ||||||||||| |||||||  ||  ||||
seq2  AACTGAGCTAT-TCTGTCTG-GATGCCATGAA-TGGCCACCACAATCCTG  47

seq1  TGAGTCTGCATTGTTGTCCCCTTTTTCAAACCATGGGGAAAGGAAGCCTG  100
      |||||||||| ||||||||||||||   |||||| |||||||||||||||
seq2  TGAGTCTGCA-TGTTGTCCCCTTTT--CAACCAT-GGGAAAGGAAGCCTG  93

seq1  TGCGCAGGTGCTTTATGAGGTCTTTAAGTCGGAGAGGTCTGGGTTTGAAT  150
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  TGCGCA-GTGCTTTATGAGGTC-TTAAGTCGGAGAGGTCTGGGTTTGAAT  141

seq1  CCGACTTCTATTGTCTTCCTGGTGGAAGTGAGGCAGGGGTCTAAGGCATC  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCGACTTCTATTGTCTTCCTGGTGGAAGTGAGGCA-GGGTCTAAGGCATC  190

seq1  AGGGTTTCTAAGTCACAGCAGTGAGGGGGAAAGACTAGAAGGAGTCTCAT  250
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGGTTTCTAAGTCACAGCAGTGA-GGGGAAAGACTAGAAGGAGTCTCAT  239

seq1  TTCCGTGGTTTCTTTGACTAGCTACTGAAGTGGGTCTGGAGCTAGGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTGGTTTCTTTGACTAGCTACTGAAGTGGGTCTGGAGCTAGGAGCT  289

seq1  TTTTTGAGGTCACGTGGAAGAAGAGCAGTATACTGTGGTTGAAGTTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGGTCACGTGGAAGAAGAGCAGTATACTGTGGTTGAAGTTTATC  339

seq1  TTGCTTTGTCATGATATCTCGCAACCTGATGGCAAGTAGTGTTTCCTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGTCATGATATCTCGCAACCTGATGGCAAGTAGTGTTTCCTTGG  389

seq1  CCTGCTTCCCTTTTTGGGGGAGAATATGCCGTCCATTTTATCCCCAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCCCTTTTTGGGGGAGAATATGCCGTCCATTTTATCCCCAATGT  439

seq1  CTCATAACCTTGGTTATCTCAGAAAGCAGTCGGGTACCTGCTACTGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAACCTTGGTTATCTCAGAAAGCAGTCGGGTACCTGCTACTGCACA  489

seq1  AGGACTTTGCTAACTGGGTGAGGTGAGAGGAGTTTGCAGTGACTGGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTTGCTAACTGGGTGAGGTGAGAGGAGTTTGCAGTGACTGGGCTG  539

seq1  TTGTAAGGCTGTTCCAGGAATAGCTCTTCAGCGCACTCTGTTCTGGTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGGCTGTTCCAGGAATAGCTCTTCAGCGCACTCTGTTCTGGTTGC  589

seq1  TGAGCCCCCAGCCCCTGCTCATTGAGAACGAGCACAGGAAACCTGGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCCCAGCCCCTGCTCATTGAGAACGAGCACAGGAAACCTGGCTTT  639

seq1  CACTATCTGGCTTAGCTGTCTGAAAACCACAGAAACAGCAGGGCAATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCTGGCTTAGCTGTCTGAAAACCACAGAAACAGCAGGGCAATGTT  689

seq1  GAAGTCACTTGGCAGTTTAACAGCTATTAGAGTACAGACTGCACTAGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCACTTGGCAGTTTAACAGCTATTAGAGTACAGACTGCACTAGAGT  739

seq1  TTGCAAGCACTTATCCAAGGATCCACTGTCGAGTGAAGCCTTAGGGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGCACTTATCCAAGGATCCACTGTCGAGTGAAGCCTTAGGGTTTT  789

seq1  GCTGACATCACTTTTACTAGGCAATATAACAGTGTCGGTAAGATAATAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACATCACTTTTACTAGGCAATATAACAGTGTCGGTAAGATAATAAG  839

seq1  AGAAGTTGCTTTGTTAGTGGCATGGGTCTTCCTGCTTATCAACTGGTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGCTTTGTTAGTGGCATGGGTCTTCCTGCTTATCAACTGGTTGC  889

seq1  CGGTTGCCTCTGTCCTATGCTGGTGTCATAGAAGCCTGTGTTGAGGGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGCCTCTGTCCTATGCTGGTGTCATAGAAGCCTGTGTTGAGGGATT  939

seq1  GGAGTGCCTAAATGGTGACACAGGATGTACTGATTCAAGGCTTACTTGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCCTAAATGGTGACACAGGATGTACTGATTCAAGGCTTACTTGTT  989

seq1  GGCAGCAGCAGAGTGGCTTCAGGGGACATTCAGTGCGGTGTTAGGTGTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAGCAGAGTGGCTTCAGGGGACATTCAGTGCGGTGTTAGGTGTCT  1039

seq1  GCATTTAAGTTCTCAGAGGGCTTCCGTGACTCATACTCTCCTTGTTTAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAAGTTCTCAGAGGGCTTCCGTGACTCATACTCTCCTTGTTTAAT  1089

seq1  AATTTCTTTCATTAACATGATGGCTCTTGTGAGGGATTCTTCTGGAATTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTTCATTAACATGATGGCTCTTGTGAGGGATTCTTCTGGAATTC  1139