BAC Information

Click to search

BAC

Clone NameB6Ng01-040A04
Chromosome14 (Build37)
Map Location 114,279,468 - 114,410,651
singlet/doubletdoublet
Overlap geneLOC382947
Upstream geneLOC100043509, Tpm3-rs7, LOC100043510
Downstream geneLOC668791, LOC100043821, LOC100043521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040A04.bB6Ng01-040A04.g
ACCDH867109DH867110
length820871
definitionDH867109|Mus musculus domesticus DNA, BAC clone: B6Ng01-040A04, 5' end.DH867110|Mus musculus domesticus DNA, BAC clone: B6Ng01-040A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,409,832 - 114,410,651)(114,279,468 - 114,280,337)
sequence
gaattccactgtgtagcattaagattttcttttctctacagcttgacaaa
cacccagcattgattgccctctttctctgcttaccaagaaaatgcaacaa
tatacccagaatattttgtacaggggagggaatcttggttttcatttttc
ggagtctctgtccctgtcatacagaaatgttcaattctctaacaaacctt
agttcccagtctctgcaaaagtgttgccttgttactgtcttactctcatc
gtctctcagtaaaatatactattgaattatatgttgttttccacagaata
aaggctcacttgacaggcagggcatactgaaaatttagagattactggac
aggagccaagggcaaaggcttgacctttctttagaagcaacaaaacactt
tattgcacattgaaaatagtattatttttcacttagatttttttttggta
gaaaatataaaccagaaaatatagcataaatgtatttttataataaacat
atagaccaactaaaagaattttgtaaataaattaactaatcagacacaaa
tttttctgtccccatatccagctgtaacagaaaatcaagtatcagatagt
acagacaaaattcagtaataccaaataaaattaaaaaaaaaaatcgctgg
caatctaaaagactgcccacatgcttctgtcagtccatctctgaaggccg
ttaggaactagaagctcttacagtctaccttcagatgctctgcttcagta
gctatgaccttaccggcctcaaacagctctctctctctctctctctctct
ctctctctctctctctctct
gaattcctgttattttttattttatttaagttccaggctgaaatctgttg
gatttcatgtagaattattctatacagacaagctgccatttttgtgctat
acaatttaatctttgtcattactaatataaaatgactttatttaaaatat
gagtcctaatatggcctagttttttgatgcaaaaaattctagacctgtgt
tcagaagagtaaacagaaaggaagcaatggagactgtacagttcgtgtgg
tggttcctgagtggtagatacagcagcatcttctccttaggtgaacataa
gtaagggcagtagtactacttgaagtcaaataatctcaaataatctcata
acactaagttgtacaacatgtcaagaatcttgatgtttgtacctgaattg
agaaggaatttaaatctgctaaacaaatttgtgtatgtaatataagtaaa
tgtttggaactcataaattatacacatcacctcactgaggtgaaaaacat
tctttcctaagttggagatgtttgtcttctttgctagtataggaatatat
gaatgcattcattaaaatgtgttaattcctggtgaaagatttctgtcact
ctgagagaaatattaacttgggttaatagaaacagatcttcctccaagaa
aagaaaaagtaagggaatacttcaggaacatttttgtaatttattttatt
gaaaaaattatacgtgagtgaatttaaaacattatgggttgtgaaataga
attttgagttaagttacgtcagtatttacagaatgaaatttataataagt
ggtaagagatttacttttactaacaacattgagaaaaacaagctcatagt
agggtatggggggggggatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_114409832_114410651
seq2: B6Ng01-040A04.b_43_862 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTGTTT  50

seq1  GAGGCCGGTAAGGTCATAGCTACTGAAGCAGAGCATCTGAAGGTAGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCGGTAAGGTCATAGCTACTGAAGCAGAGCATCTGAAGGTAGACTG  100

seq1  TAAGAGCTTCTAGTTCCTAACGGCCTTCAGAGATGGACTGACAGAAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCTTCTAGTTCCTAACGGCCTTCAGAGATGGACTGACAGAAGCAT  150

seq1  GTGGGCAGTCTTTTAGATTGCCAGCGATTTTTTTTTTTAATTTTATTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGTCTTTTAGATTGCCAGCGATTTTTTTTTTTAATTTTATTTGG  200

seq1  TATTACTGAATTTTGTCTGTACTATCTGATACTTGATTTTCTGTTACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTGAATTTTGTCTGTACTATCTGATACTTGATTTTCTGTTACAGC  250

seq1  TGGATATGGGGACAGAAAAATTTGTGTCTGATTAGTTAATTTATTTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGGGGACAGAAAAATTTGTGTCTGATTAGTTAATTTATTTACAA  300

seq1  AATTCTTTTAGTTGGTCTATATGTTTATTATAAAAATACATTTATGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTTAGTTGGTCTATATGTTTATTATAAAAATACATTTATGCTAT  350

seq1  ATTTTCTGGTTTATATTTTCTACCAAAAAAAAATCTAAGTGAAAAATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGGTTTATATTTTCTACCAAAAAAAAATCTAAGTGAAAAATAAT  400

seq1  ACTATTTTCAATGTGCAATAAAGTGTTTTGTTGCTTCTAAAGAAAGGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTCAATGTGCAATAAAGTGTTTTGTTGCTTCTAAAGAAAGGTCA  450

seq1  AGCCTTTGCCCTTGGCTCCTGTCCAGTAATCTCTAAATTTTCAGTATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTGCCCTTGGCTCCTGTCCAGTAATCTCTAAATTTTCAGTATGCC  500

seq1  CTGCCTGTCAAGTGAGCCTTTATTCTGTGGAAAACAACATATAATTCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGTCAAGTGAGCCTTTATTCTGTGGAAAACAACATATAATTCAAT  550

seq1  AGTATATTTTACTGAGAGACGATGAGAGTAAGACAGTAACAAGGCAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTTTACTGAGAGACGATGAGAGTAAGACAGTAACAAGGCAACAC  600

seq1  TTTTGCAGAGACTGGGAACTAAGGTTTGTTAGAGAATTGAACATTTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGAGACTGGGAACTAAGGTTTGTTAGAGAATTGAACATTTCTGT  650

seq1  ATGACAGGGACAGAGACTCCGAAAAATGAAAACCAAGATTCCCTCCCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGGACAGAGACTCCGAAAAATGAAAACCAAGATTCCCTCCCCTG  700

seq1  TACAAAATATTCTGGGTATATTGTTGCATTTTCTTGGTAAGCAGAGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATATTCTGGGTATATTGTTGCATTTTCTTGGTAAGCAGAGAAAG  750

seq1  AGGGCAATCAATGCTGGGTGTTTGTCAAGCTGTAGAGAAAAGAAAATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAATCAATGCTGGGTGTTTGTCAAGCTGTAGAGAAAAGAAAATCTT  800

seq1  AATGCTACACAGTGGAATTC  820
      ||||||||||||||||||||
seq2  AATGCTACACAGTGGAATTC  820

seq1: chr14_114279468_114280337
seq2: B6Ng01-040A04.g_70_940

seq1  GAATTCCTGTTATTTTTTATTTTATTTAAGTTCCAGGCTGAAATCTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTATTTTTTATTTTATTTAAGTTCCAGGCTGAAATCTGTTG  50

seq1  GATTTCATGTAGAATTATTCTATACAGACAAGCTGCCATTTTTGTGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCATGTAGAATTATTCTATACAGACAAGCTGCCATTTTTGTGCTAT  100

seq1  ACAATTTAATCTTTGTCATTACTAATATAAAATGACTTTATTTAAAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTAATCTTTGTCATTACTAATATAAAATGACTTTATTTAAAATAT  150

seq1  GAGTCCTAATATGGCCTAGTTTTTTGATGCAAAAAATTCTAGACCTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTAATATGGCCTAGTTTTTTGATGCAAAAAATTCTAGACCTGTGT  200

seq1  TCAGAAGAGTAAACAGAAAGGAAGCAATGGAGACTGTACAGTTCGTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGAGTAAACAGAAAGGAAGCAATGGAGACTGTACAGTTCGTGTGG  250

seq1  TGGTTCCTGAGTGGTAGATACAGCAGCATCTTCTCCTTAGGTGAACATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCTGAGTGGTAGATACAGCAGCATCTTCTCCTTAGGTGAACATAA  300

seq1  GTAAGGGCAGTAGTACTACTTGAAGTCAAATAATCTCAAATAATCTCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGCAGTAGTACTACTTGAAGTCAAATAATCTCAAATAATCTCATA  350

seq1  ACACTAAGTTGTACAACATGTCAAGAATCTTGATGTTTGTACCTGAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAGTTGTACAACATGTCAAGAATCTTGATGTTTGTACCTGAATTG  400

seq1  AGAAGGAATTTAAATCTGCTAAACAAATTTGTGTATGTAATATAAGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAATTTAAATCTGCTAAACAAATTTGTGTATGTAATATAAGTAAA  450

seq1  TGTTTGGAACTCATAAATTATACACATCACCTCACTGAGGTGAAAAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGAACTCATAAATTATACACATCACCTCACTGAGGTGAAAAACAT  500

seq1  TCTTTCCTAAGTTGGAGATGTTTGTCTTCTTTGCTAGTATAGGAATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTAAGTTGGAGATGTTTGTCTTCTTTGCTAGTATAGGAATATAT  550

seq1  GAATGCATTCATTAAAATGTGTTAATTCCTGGTGAAAGATTTCTGTCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCATTCATTAAAATGTGTTAATTCCTGGTGAAAGATTTCTGTCACT  600

seq1  CTGAGAGAAATATTAACTTGGGTTAATAGAAACAGATCTTCCTCCAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGAAATATTAACTTGGGTTAATAGAAACAGATCTTCCTCCAAGAA  650

seq1  AAGAAAAAGTAAGGGAATACTTCAGGAACATTTTTGTAATTTATTTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGTAAGGGAATACTTCAGGAACATTTTTGTAATTTATTTTATT  700

seq1  GAAAAAATTATACGTGAGTGAATTTAAAACATTATGGGTTGTGAAATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATTATACGTGAGTGAATTTAAAACATTATGGGTTGTGAAATAGA  750

seq1  ATTTTGAGTTAAGTTACGTCAGTATTTACAGAATGAAATTTATAATAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGTTAAGTTACGTCAGTATTTACAGAATGAAATTTATAATAAGT  800

seq1  GGTAAGAGATTTACTTTTACTAACAACATTGAGAAAAACAAGCTCATAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAGATTTACTTTTACTAACAACATTGAGAAAAACAAGCTCATAGT  850

seq1  AGGGGTAT--GGGGGAGGATGT  870
      | ||||||  ||||| ||||||
seq2  A-GGGTATGGGGGGGGGGATGT  871