BAC Information

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BAC

Clone NameB6Ng01-040B20
Chromosome14 (Build37)
Map Location 76,051,443 - 76,052,623
singlet/doubletsinglet
Overlap gene4930564B18Rik
Upstream geneHtr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert
Downstream geneCog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040B20.bB6Ng01-040B20.g
ACCDH867180DH867181
length9221,161
definitionDH867180|Mus musculus domesticus DNA, BAC clone: B6Ng01-040B20, 5' end.DH867181|Mus musculus domesticus DNA, BAC clone: B6Ng01-040B20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattcacagcccacaggtcgctagcctgtcactgtcactcctgtc
acagagtcagcggctttgtgtagagtatagaacagaaggactagataaat
gtgtaaatgcaaggggaataggaattttctagcttagacgaaagagacag
agaaaggaggaggctagattggaacccatggtataggcgtctaaattaga
gatatccatcactcgggatttaaaagtatctggggagggtggtgagatgg
ctcagtggttaaggatacttgctgttcttctaaaggacttgggttcagtt
cccagcactcacatagcagcttataatcatctgtgctcctattctagggg
gtctgatgccctcttctgacttctgtggacaccagacatccatgtggtgt
ccatagaggtcatgatcacacgtgaacgaacacacatgcacttgcacaca
catgcacacgaaatattcataacataagcaggaataactaaacctaagaa
caatttaaaaaatatctgcggtgagaggcatattgtttgtgagggtaaca
ctgatggtcaacctgacagatctagaatcaaggttcctgggatacccatg
aggtattatctagattaggcatgcctgtgagggatgtgtgggggcaggga
aactgaagtgggaagactccccctgaatgtggccaataccttctatcaga
agctgatatacaaggagccccaagggaaaaccctttgctttgcttgcctt
tgcctcttgctagtgagcgcttctgtcattgcttctaaatttcctttgct
ggcaccagaaccaggcttctttggctctccaagatggactgaaggccatt
ggtttctacaggagccttggcatcagattgggactactgaggtacccagg
ctgctggtatgagcactgccat
gaattccacagctcagctggtcacataggtttcagacaagaaaagttagc
cttagatgcacggctaatctataatagtgtgaaggaggaaaaagcctaga
gtcgtgtgtgccaaaagcagggcaaggcatatgttcaaaattacatattt
ggattggagtccagccagcgtgtgtaatttctcttccaaccctgtcacct
gtgacacagtggccagaatatctgctggtacttgttctaactttgacata
ttatcatgctggtggttgtggacatgatacactccccaaataccatccta
acacagtctcaaagtgagatatcaggaactgactgtgccagctgctgcca
catagctaataatgctactgtgttgctgataccatgggatgttagaaaag
attcattagaaggctctctaggctctctctagggactcttgaaaattggt
ctagtaaacttctaactaaagatgcattttcacacgaatgggtttccttt
tagcaagtaggaactctgtgtacattatttatttgttcttttaaataatt
gccaggaaagcttctagctatctaacgggatccctgttgtgtggcttttc
ctggggaggcacaaacaaacatccattgattctagataagggattgaaat
cagatcacaaaaactactccacccaagtctagcatagagaaccaatggat
gtagctgggacactctcagaagcatgggtgagggcttatttgtggaacca
tggctaactcaaaggcagttccatcaccaaagaggcaacccagtgtgggt
gacaactcacaaaagcgccaccttgcaggcagcacctccaaagagtcttc
ttctgacatttttcactgcttacatagccttagagagaatcctcccgaat
cttgtaactttctgagcatcctgagacttgtaagtttagtgaacttcctt
agtcttatgagcttccctctccccagtgtttcatacagaacacatagcac
actaatggccttacagttgagctcttagatctactcatctatcctaaaca
gaaaagcttatctagacttggatagacccagctagaatagaatcacaaat
gtggtcttagcggttaagctacatcagccattcacacttctggagctggt
attttttttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_76051443_76052623
seq2: B6Ng01-040B20.g_66_1226

seq1  GAATTCCACAGCTCAGCTGGTCACATAGGTTTCAGACAAGAAAAGTTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGCTCAGCTGGTCACATAGGTTTCAGACAAGAAAAGTTAGC  50

seq1  CTTAGATGCACGGCTAATCTATAATAGTGTGAAGGAGGAAAAAGCCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATGCACGGCTAATCTATAATAGTGTGAAGGAGGAAAAAGCCTAGA  100

seq1  GTCGTGTGTGCCAAAAGCAGGGCAAGGCATATGTTCAAAATTACATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGTGTGCCAAAAGCAGGGCAAGGCATATGTTCAAAATTACATATTT  150

seq1  GGATTGGAGTCCAGCCAGCGTGTGTAATTTCTCTTCCAACCCTGTCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGAGTCCAGCCAGCGTGTGTAATTTCTCTTCCAACCCTGTCACCT  200

seq1  GTGACACAGTGGCCAGAATATCTGCTGGTACTTGTTCTAACTTTGACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACAGTGGCCAGAATATCTGCTGGTACTTGTTCTAACTTTGACATA  250

seq1  TTATCATGCTGGTGGTTGTGGACATGATACACTCCCCAAATACCATCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATGCTGGTGGTTGTGGACATGATACACTCCCCAAATACCATCCTA  300

seq1  ACACAGTCTCAAAGTGAGATATCAGGAACTGACTGTGCCAGCTGCTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTCTCAAAGTGAGATATCAGGAACTGACTGTGCCAGCTGCTGCCA  350

seq1  CATAGCTAATAATGCTACTGTGTTGCTGATACCATGGGATGTTAGAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTAATAATGCTACTGTGTTGCTGATACCATGGGATGTTAGAAAAG  400

seq1  ATTCATTAGAAGGCTCTCTAGGCTCTCTCTAGGGACTCTTGAAAATTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTAGAAGGCTCTCTAGGCTCTCTCTAGGGACTCTTGAAAATTGGT  450

seq1  CTAGTAAACTTCTAACTAAAGATGCATTTTCACACGAATGGGTTTCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAACTTCTAACTAAAGATGCATTTTCACACGAATGGGTTTCCTTT  500

seq1  TAGCAAGTAGGAACTCTGTGTACATTATTTATTTGTTCTTTTAAATAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGTAGGAACTCTGTGTACATTATTTATTTGTTCTTTTAAATAATT  550

seq1  GCCAGGAAAGCTTCTAGCTATCTAACGGGATCCCTGTTGTGTGGCTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAAGCTTCTAGCTATCTAACGGGATCCCTGTTGTGTGGCTTTTC  600

seq1  CTGGGGAGGCACAAACAAACATCCATTGATTCTAGATAAGGGATTGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAGGCACAAACAAACATCCATTGATTCTAGATAAGGGATTGAAAT  650

seq1  CAGATCACAAAAACTACTCCACCCAAGTCTAGCATAGAGAACCAATGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCACAAAAACTACTCCACCCAAGTCTAGCATAGAGAACCAATGGAT  700

seq1  GTAGCTGGGACACTCTCAGAAGCATGGGTGAGGGCTTATTTGTGGAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGGGACACTCTCAGAAGCATGGGTGAGGGCTTATTTGTGGAACCA  750

seq1  TGGCTAACTCAAAGGCAGTTCCATCACCAAAGAGGCAACCCAGTGTGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAACTCAAAGGCAGTTCCATCACCAAAGAGGCAACCCAGTGTGGGT  800

seq1  GACAACTCACAAAAGCGCCACCTTGCAGGCAGCACCTCCAAAGAGTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTCACAAAAGCGCCACCTTGCAGGCAGCACCTCCAAAGAGTCTTC  850

seq1  TTCTGACATTTTTCACTGCTTACATAGCCTTAGAGAGAATCCTCCCGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACATTTTTCACTGCTTACATAGCCTTAGAGAGAATCCTCCCGAAT  900

seq1  CTTGTAACTTTCTGAGCATCCTGAGACTTGTAAGTTTAGTGAACTTCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAACTTTCTGAGCATCCTGAGACTTGTAAGTTTAGTGAACTTCCTT  950

seq1  AGTCTTATGAGCTTCCCTCTCCCCCAGTGTTTCAATACAGAACACATAGC  1000
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  AGTCTTATGAGCTTCCCTCT-CCCCAGTGTTTC-ATACAGAACACATAGC  998

seq1  AACACTAATGGCCCTAACAGTTTGAGCTCTTAGATCTTACTCATCTATTC  1050
       |||||||||| ||| |||| ||||||||||||||| |||||||||| ||
seq2  -ACACTAATGG-CCTTACAG-TTGAGCTCTTAGATC-TACTCATCTA-TC  1043

seq1  CTAAACAGAGAGCTTTATCTAGACTTTGGGATTAGACACAGCTAGAATAG  1100
      ||||||||| |   ||||||||||||  ||| ||||| ||||||||||||
seq2  CTAAACAGAAAAGCTTATCTAGACTT--GGA-TAGACCCAGCTAGAATAG  1090

seq1  AATCACAAATGTGGGTCCTTAGCAGTTATAGCTTACATCAGTCAATCCAA  1150
      ||||||||||||||   |||||| |||| ||| |||||||| || ||  |
seq2  AATCACAAATGTGG--TCTTAGCGGTTA-AGC-TACATCAGCCATTCACA  1136

seq1  CTTCTGAAAGCCCTGGGGTTATTTTTTTTCT  1181
      ||||||   |  ||||   ||||||||||||
seq2  CTTCTG---GAGCTGG---TATTTTTTTTCT  1161