BAC Information

Click to search

BAC

Clone NameB6Ng01-041G11
Chromosome14 (Build37)
Map Location 17,509,958 - 17,611,109
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb
Downstream geneTpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041G11.bB6Ng01-041G11.g
ACCDH868079DH868080
length960711
definitionDH868079|Mus musculus domesticus DNA, BAC clone: B6Ng01-041G11, 5' end.DH868080|Mus musculus domesticus DNA, BAC clone: B6Ng01-041G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,610,169 - 17,611,109)(17,509,958 - 17,510,650)
sequence
gaattctttggtctctctctttcccattttttatggggttattgctggat
aggaaatgtgccgtcttgagtactttaggcttgtcggatattcatgacct
atctgatttgatatccgtaactatcctttaccaatcagttggtggtgggg
agccaactttgacctagtcttttgaggagacaaaactttgcactcccata
aagcccactgtccaacctccctatccaacatgcaagctgcaggttcagtg
ggaggcctttcctttccacagaaaccaaataaggagggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagattggcgtgtaacatattaatgttattcagatggtagccagc
atgctcacatgcatgcctgggtgcatgctaatgttcatgcccaggtgcat
gctcacatacatgcttgtgattgaaggaacaatatcagtaccacatgtca
gatcaataggttcttttgatttgtttcatttacatgatatccttgattag
aactttcaaaggtaagagtgcttaaatcacttctgataactcatccagca
tttcgaaaacatgtttatatgtatttataacctccaaaatcataaaatca
gcatatgttaaaagtaattttaattttttctttgcttatgatgacaagaa
cagtctggctgtggtggcagatggtctgccagcaggtcatggtctcatgg
aatctaccatagacatgggcagtggtaattctgttggctttgtactgttt
ccattctctctgccgggatcccagctccatggtcttccttccttagttaa
cctctctgggcatttcccttacttatcccaattgttgcatctccaaggtg
ttatttatttttaatatgtttgacattgaaactaactattacaggtgatg
tcaaacattc
gaattctttgatatgcccaggcttttagtcatcacttttgaatcgtttga
ctacatcattaattaacaccttactccggttggatgaactccaccttcct
gcaggcattggggacggacgggtcctgtgaataaactacaacagcccatg
gactgcttgactttttagaggaaatgcttgttttctctacactggtctcc
taaaattcagcaatctccttaaaatcattgaattaatgatgtatcaatgt
gatccacattataaaaaaaatctctgaaaggaacaaagaggggcaaatga
aagtgaaggagaaggaataaaacttcgtctacaagaggagtaggcagaga
gcccatgctaatgtctgaagctcctgcaagaggagtaggcagagagctca
caggatagtcagaaacgcctgaatctggcctacccaccttccccatagct
gagcagaatgacctcctctgccctgctgagcccaatgaatctattctaga
tttctttgccagtgacgccaactacaggcttgtaatactacaagctggtc
atacagggtgtattgcttatttgtttgttttaataaacaagtatttgggt
tgtttcttcttctgcgaaagctgacagatatacttcactactcacactgt
cacatacatactcagttttctcctgagataatggaaaaaaacctttccat
ctttctgtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_17610169_17611109
seq2: B6Ng01-041G11.b_67_1004 (reverse)

seq1  GAATGTTTTGACATCACCTGTGATAGTTAGTTTTCATTGTC-AACCTATT  49
      ||||| ||||||||||||||| |||||||| ||||| |||| ||| ||||
seq2  GAATG-TTTGACATCACCTGTAATAGTTAG-TTTCAATGTCAAACATATT  48

seq1  AGAATTTGTAATCACCTTGGAGATGCACCATTGGGGATATGTAAGGG-AA  98
      | || |    | ||||||||||||||| || | |||||| ||||||| ||
seq2  AAAAATAAATAACACCTTGGAGATGCAACAATTGGGATAAGTAAGGGAAA  98

seq1  TGCCCAGAGAGGTTTAACTAAGGAAGGAAGACCATGGAGCTGGGGTTCCA  148
      |||||||||||| |||||||||||||||||||||||||||| ||| ||| 
seq2  TGCCCAGAGAGG-TTAACTAAGGAAGGAAGACCATGGAGCT-GGGATCCC  146

seq1  GACAGAGAAGAAATGGAAACAGTACAAAGCCAGCAGAA-TACCACTGCCC  197
      | ||||||   ||||||||||||||||||||| ||||| |||||||||||
seq2  GGCAGAGA--GAATGGAAACAGTACAAAGCCAACAGAATTACCACTGCCC  194

seq1  ATGTCTATGGTAGATTCCATGAGACCATGACCTGCTGGCAGACCATCTGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTATGGTAGATTCCATGAGACCATGACCTGCTGGCAGACCATCTGC  244

seq1  CACCACAGCCAGACTGTTCTTGTCATCATAAGCAAAGAAAAAATTAAAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACAGCCAGACTGTTCTTGTCATCATAAGCAAAGAAAAAATTAAAAT  294

seq1  TACTTTTAACATATGCTGATTTTCTGATTTTGGAGGTTATAAATACATAT  347
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TACTTTTAACATATGCTGATTTTATGATTTTGGAGGTTATAAATACATAT  344

seq1  AAACATGTTTTCGAAATGCTGGATGAGTTATCAGAAGTGATTTAAGCACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTTTTCGAAATGCTGGATGAGTTATCAGAAGTGATTTAAGCACT  394

seq1  CTTACCTTTGAAAGTTCTAATCAAGGATATCATGTAAATGAAACAAATCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTTTGAAAGTTCTAATCAAGGATATCATGTAAATGAAACAAATCA  444

seq1  AAAGAACCTATTGATCTGACATGTGGTACTGATATTGTTCCTTCAATCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCTATTGATCTGACATGTGGTACTGATATTGTTCCTTCAATCAC  494

seq1  AAGCATGTATGTGAGCATGCACCTGGGCATGAACATTAGCATGCACCCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTATGTGAGCATGCACCTGGGCATGAACATTAGCATGCACCCAG  544

seq1  GCATGCATGTGAGCATGCTGGCTACCATCTGAATAACATTAATATGTTAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATGTGAGCATGCTGGCTACCATCTGAATAACATTAATATGTTAC  594

seq1  ACGCCAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGA  644

seq1  AACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGTACAGGG  697
      |||||||||||||||||||||||||||||| |    || ||| | | | |
seq2  AACTTATAGAGGAGAAAGTGGGGAAAAGCCCTCCTTATTTGGTTTCTGTG  694

seq1  GAA---AAATTCCT-GAACAGAA-CAGCAATGGCTTGCTCTGTAAGATCG  742
      |||   |||  |||   || ||| | |||   ||||||  |||  ||| |
seq2  GAAAGGAAAGGCCTCCCACTGAACCTGCA---GCTTGC-ATGTTGGATAG  740

seq1  AGA-ATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAA  791
       ||  |||   | |||| | | |||  | | ||||||||   |    |||
seq2  GGAGGTTGGACAGTGGG-CTTTATGGGAGTGCAAAGTTTTGTCTCCTCAA  789

seq1  AAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATC  841
      |||||   |||||            ||||||||| |||||| ||||||| 
seq2  AAGACTAGGTCAAAGTTGGCTCCCCACCACCAACTGATTGGTAAAGGATA  839

seq1  TTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGA  891
       ||||  ||   ||||||||||||  |  ||||||| |||    ||||| 
seq2  GTTACGGATATCAAATCAGATAGGTCATGAATATCCGACAAGCCTAAAGT  889

seq1  ACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGG  941
      |||||||| ||   | |||  |      |||||||||| |||||||||||
seq2  ACTCAAGACGGCACATTTCCTATCCAGCAATAACCCCA-TAAAAAATGGG  938

seq1: chr14_17509958_17510650
seq2: B6Ng01-041G11.g_92_779

seq1  TTTAGTCATCAATATTTAATCATCTGACTATCTAATTAATTAATAAATTA  50
      ||||||||||| | || |||| | ||||||  | ||||||||| |  |||
seq2  TTTAGTCATCACTTTTGAATCGTTTGACTACATCATTAATTAACACCTTA  50

seq1  GTCTGGTTGGATGGTAGCT---CCTTCCTGGAGGCATCTGGAACTAATGG  97
       || |||||||||  | ||   |||||||| ||||||  || ||  | ||
seq2  CTCCGGTTGGATG--AACTCCACCTTCCTGCAGGCATTGGGGACGGACGG  98

seq1  CTACATAGAAAAAAGTACAACAGCCCACAAGACTGCTAAATCTTTTTAGA  147
       | |   ||| ||| ||||||||||||   |||||||  | |||||||||
seq2  GTCCTGTGAATAAACTACAACAGCCCA-TGGACTGCTTGA-CTTTTTAGA  146

seq1  GGAAATGCTTGTTTTCTCTACTACTGGTCTCAAGAAAATCTAGGCAATCT  197
      ||||||||||||||||||||| |||||||||   ||| ||   |||||||
seq2  GGAAATGCTTGTTTTCTCTAC-ACTGGTCTCCTAAAATTC--AGCAATCT  193

seq1  CCTTAAAATCATTGAATTAATGATGTTCCAATGTGATCCAGATTATAAAA  247
      ||||||||||||||||||||||||||  |||||||||||| |||||||||
seq2  CCTTAAAATCATTGAATTAATGATGTATCAATGTGATCCACATTATAAAA  243

seq1  AAAATCTCTGAAAGGAACAAAGAGGGGCAAATGAAAGTGAAGGAGAAGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTCTGAAAGGAACAAAGAGGGGCAAATGAAAGTGAAGGAGAAGGA  293

seq1  ATAAAACTGTGTCTACAAGAGGAGTAGGCAGAGAGCCCATGGGAATGTCT  347
      ||||||||  |||||||||||||||||||||||||||||||  |||||||
seq2  ATAAAACTTCGTCTACAAGAGGAGTAGGCAGAGAGCCCATGCTAATGTCT  343

seq1  GAAGCTCCTGCAAGAGGAGTAGGCAGAGAGCTCACAGGAGAGTCTGAAAC  397
      ||||||||||||||||||||||||||||||||||||||| |||| |||||
seq2  GAAGCTCCTGCAAGAGGAGTAGGCAGAGAGCTCACAGGATAGTCAGAAAC  393

seq1  TCCTGAATCTGTCCTACCCACCTTCCCCATAGCTGAGCAGAATGACCTCG  447
       |||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  GCCTGAATCTGGCCTACCCACCTTCCCCATAGCTGAGCAGAATGACCTCC  443

seq1  TCTGCCCTGCTGAGCCCAGTCAATCTATTCTAGATTTCTTTGCCAGTGAC  497
      |||||||||||||||||| | |||||||||||||||||||||||||||||
seq2  TCTGCCCTGCTGAGCCCAATGAATCTATTCTAGATTTCTTTGCCAGTGAC  493

seq1  TCCAACTACAGGCTTGTAGAACTACAAGCTGGTCACACAGGGTGTATTGC  547
       |||||||||||||||||  ||||||||||||||| ||||||||||||||
seq2  GCCAACTACAGGCTTGTAATACTACAAGCTGGTCATACAGGGTGTATTGC  543

seq1  TTATTTGTTTGTTTTAATAAACAAGTATTTGGGTTGTTTCTTATTCAGCA  597
      |||||||||||||||||||||||||||||||||||||||||| ||| || 
seq2  TTATTTGTTTGTTTTAATAAACAAGTATTTGGGTTGTTTCTTCTTCTGCG  593

seq1  AAAGCTGACAGATATACTTCACTCCACACACTGTCACATACATATTCAGT  647
      ||||||||||||||||||||||| | |||||||||||||||||| |||||
seq2  AAAGCTGACAGATATACTTCACTACTCACACTGTCACATACATACTCAGT  643

seq1  TTTCAGCTTTAGAGAATGGAAAAAAACCTTTCCAGCTTTCTGTGAG  693
      ||||  | | ||| |||||||||||||||||||| |||||||||||
seq2  TTTC-TCCTGAGATAATGGAAAAAAACCTTTCCATCTTTCTGTGAG  688