BAC Information

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BAC

Clone NameB6Ng01-041K17
Chromosome14 (Build37)
Map Location 55,175,820 - 55,321,250
singlet/doubletdoublet
Overlap geneJub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676
Upstream geneEG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e
Downstream geneCebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041K17.bB6Ng01-041K17.g
ACCDH868265DH868266
length218984
definitionDH868265|Mus musculus domesticus DNA, BAC clone: B6Ng01-041K17, 5' end.DH868266|Mus musculus domesticus DNA, BAC clone: B6Ng01-041K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,321,033 - 55,321,250)(55,175,820 - 55,176,792)
sequence
gaattcactctgtagaccaggctgacctggaactcagagatccacctccc
tctccctcccaaatgctgggattaaaagcatgctccactacctccttgct
ataaataaatcttaaaaacaaaaattaaaaataaataagtaaaaaggtac
aattgggcatagtgatacatttgggctatctctgtgctggattttggtag
aggggagaagtggggggt
gaattcattaggtgagctctctttgagacaagagagttaatgctctctag
tacagagagtgtaggtcattctagcaaccagaaatgcagcagaggtacat
gactttaatcccagcactctggagacaagcaaacctctgtgatttcaaga
ctagagtagtctacatagtgagttccaggacagccaaagctatgtagaga
gaccctgtctcaacgaaaacataagaaaatatggcaaaggattgcaaaaa
gaatgttcaaatcagagcacccaccgtcctgagccagagctgcaccccac
caaactccttttcctcaggttactttgtaaagaaaaaaaaaaaaaacagc
ctcattggggtgttttagcataaaatgttcaaagggttttgctgtaactg
tgcattaccacaagtcagctagtgagcaccctccaaaattactcaccgtc
caaagttgcagccacccccaccgctcccagaattcaggaggctgaaatac
aaaggatcccaaactggaggacagcctgggcagctccatgtaactctgtc
tcgaaagcaaacagaaaagaaactggggcattgccaagtgagagcgagct
tacgacggaagtctagcatcctgaactcagtctcaagtatcataaataca
tacacgcaaacacacatttttgattgttttaattttttgagacaggcctc
aaacttacaaatgtagcccacggctagctttgaactcctgattcccctga
attcactatccaagtaaataatcacatttgaaaataaaaatataaaacta
gtgaacacagggggtgcataccttaatcctatcactggagacacagaagc
agggggaatctctgtgagtcaagtttactgtaatgagttccaggacagcc
agggatacatagagagaccctgttgataaatattaggactggaaaatggc
tcaccagttagaacacttgaaaccttcgaagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55321033_55321250
seq2: B6Ng01-041K17.b_36_253 (reverse)

seq1  ACCCCCCACTTCTCCCCTCTACCAAAATCCAGCACAGAGATAGCCCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCACTTCTCCCCTCTACCAAAATCCAGCACAGAGATAGCCCAAAT  50

seq1  GTATCACTATGCCCAATTGTACCTTTTTACTTATTTATTTTTAATTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACTATGCCCAATTGTACCTTTTTACTTATTTATTTTTAATTTTTG  100

seq1  TTTTTAAGATTTATTTATAGCAAGGAGGTAGTGGAGCATGCTTTTAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGATTTATTTATAGCAAGGAGGTAGTGGAGCATGCTTTTAATCC  150

seq1  CAGCATTTGGGAGGGAGAGGGAGGTGGATCTCTGAGTTCCAGGTCAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTGGGAGGGAGAGGGAGGTGGATCTCTGAGTTCCAGGTCAGCCT  200

seq1  GGTCTACAGAGTGAATTC  218
      ||||||||||||||||||
seq2  GGTCTACAGAGTGAATTC  218

seq1: chr14_55175820_55176792
seq2: B6Ng01-041K17.g_69_1038

seq1  GAATTCATTAGGTGAGCTCTCTTTGAGACAAGAGAGTTAATGCTCTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGGTGAGCTCTCTTTGAGACAAGAGAGTTAATGCTCTCTAG  50

seq1  TACAGAGAGTGTAGGTCATTCTAGCAACCAGAAATGCAGCAGAGGTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAGTGTAGGTCATTCTAGCAACCAGAAATGCAGCAGAGGTACAT  100

seq1  GACTTTAATCCCAGCACTCTGGAGACAAGCAAACCTCTGTGATTTCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAATCCCAGCACTCTGGAGACAAGCAAACCTCTGTGATTTCAAGA  150

seq1  CTAGAGTAGTCTACATAGTGAGTTCCAGGACAGCCAAAGCTATGTAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTAGTCTACATAGTGAGTTCCAGGACAGCCAAAGCTATGTAGAGA  200

seq1  GACCCTGTCTCAACGAAAACATAAGAAAATATGGCAAAGGATTGCAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGTCTCAACGAAAACATAAGAAAATATGGCAAAGGATTGCAAAAA  250

seq1  GAATGTTCAAATCAGAGCACCCACCGTCCTGAGCCAGAGCTGCACCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTCAAATCAGAGCACCCACCGTCCTGAGCCAGAGCTGCACCCCAC  300

seq1  CAAACTCCTTTTCCTCAGGTTACTTTGTAAAGAAAAAAAAAAAAAACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCCTTTTCCTCAGGTTACTTTGTAAAGAAAAAAAAAAAAAACAGC  350

seq1  CTCATTGGGGTGTTTTAGCATAAAATGTTCAAAGGGTTTTGCTGTAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGGGGTGTTTTAGCATAAAATGTTCAAAGGGTTTTGCTGTAACTG  400

seq1  TGCATTACCACAAGTCAGCTAGTGAGCACCCTCCAAAATTACTCACCGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTACCACAAGTCAGCTAGTGAGCACCCTCCAAAATTACTCACCGTC  450

seq1  CAAAGTTGCAGCCACCCCCACCGCTCCCAGAATTCAGGAGGCTGAAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGCAGCCACCCCCACCGCTCCCAGAATTCAGGAGGCTGAAATAC  500

seq1  AAAGGATCCCAAACTGGAGGACAGCCTGGGCAGCTCCATGTAACTCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATCCCAAACTGGAGGACAGCCTGGGCAGCTCCATGTAACTCTGTC  550

seq1  TCGAAAGCAAACAGAAAAGAAACTGGGGCATTGCCAAGTGAGAGCGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAGCAAACAGAAAAGAAACTGGGGCATTGCCAAGTGAGAGCGAGCT  600

seq1  TACGACGGAAGTCTAGCATCCTGAACTCAGTCTCAAGTATCATAAATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGACGGAAGTCTAGCATCCTGAACTCAGTCTCAAGTATCATAAATACA  650

seq1  TACACGCAAACACACATTTTTGATTGTTTTAATTTTTTGAGACAGGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGCAAACACACATTTTTGATTGTTTTAATTTTTTGAGACAGGCCTC  700

seq1  AAACTTACAAATGTAGCCCACGGCTAGCTTTGAACTCCTGATTCCCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTACAAATGTAGCCCACGGCTAGCTTTGAACTCCTGATTCCCCTGA  750

seq1  ATTCACTATCCAAGTAAATAATCACATTTGAAAATAAAAATATAAAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTATCCAAGTAAATAATCACATTTGAAAATAAAAATATAAAACTA  800

seq1  GTGAACACA-GGGGTGCATACCTTAATCCTATCACTGGAGACACAGAAGC  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACACAGGGGGTGCATACCTTAATCCTATCACTGGAGACACAGAAGC  850

seq1  AGGGGGAATCTCTGTGAGTTCAAGTTTACTGTAATGAGTTCCAGGACAGC  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGGGGGAATCTCTGTGAG-TCAAGTTTACTGTAATGAGTTCCAGGACAGC  899

seq1  CAGGGATACATAGAGAGACCCTGTTGATAAATAGTTAGGACTGGAAAGAT  949
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  CAGGGATACATAGAGAGACCCTGTTGATAAATA-TTAGGACTGGAAA-AT  947

seq1  GGCTCAACAGTTAAGAACACTTGA  973
      |||||| ||||| |||||||||||
seq2  GGCTCACCAGTT-AGAACACTTGA  970