BAC Information

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BAC

Clone NameB6Ng01-042G03
Chromosome14 (Build37)
Map Location 12,700,895 - 12,859,638
singlet/doubletdoublet
Overlap genePtprg, LOC100042441
Upstream geneFhit, LOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996
Downstream gene3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022, LOC100042026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042G03.bB6Ng01-042G03.g
ACCDH868779DH868780
length1,101942
definitionDH868779|Mus musculus domesticus DNA, BAC clone: B6Ng01-042G03, 5' end.DH868780|Mus musculus domesticus DNA, BAC clone: B6Ng01-042G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,700,895 - 12,702,001)(12,858,684 - 12,859,638)
sequence
gaattccagcaatatctgctccctagtatgactgagcagtctttcttctg
ctttatcaatctaccttgcttcatatctagctgtggaagaaccagtacat
gaatcatgggcagctagtgcttccccttcccatctctggacttaaggtgg
ctcggtattatagctgcattatcttttgctatggcctcttttttctactt
taagtatcgccttttttgtacttgcattttctcaaccaaattggttgtgg
gtgaagaccattgattgctgtgctcagtgtggacttggcggccatgaagt
tccctgtaagatcaccctgcatctgaccttttcgtctgggtcttgccttt
gtccttggccttgttcctcacttcctttcttcatatcagcgctggcattc
ttgagaggcagccagggacagactgcccaagccctgtgggatcgctgtct
aatttgaactgccattggcttccggtggcacttggaagcaggtctgagca
tcttggcgatctcaggttcttccacaggatatgacctttgacttgtgctc
ttcctgttttagctgctttctggagtgtggctgcccccaccctctcaccc
cactccctcactgctacttccatttcccatgcatcttcagctttggtttg
tctgtgccccatagctatcttcattacctcctttgatgttcttttctaca
ctttatttctgtaaactaataattaatatattatgtgtttaaagataaaa
aaggcagtggagagctgaggtaggtctctggtgaactgcagaaggctaga
gtcctgtgcctttattgtttcctaacgtcttccatactagttacttctcc
tctccctatgatcaagtactcagtttgaggatacagttcatcacagcaag
gatttcaaggcagcagagcttgaagcagttggtcacatgtattcttcatt
caggaaaaacagtcttattcctctgctggctttctcctttgtacagtcta
tgacgaaagagctgtctacttagaatgatgcagccatcttcattaaccta
ttaaaggaagtccttgctgctgcccgaaggttgccccatccagacaaccc
c
gaattctctctctggcctgagcagcagtcatcagaggacctcagctgcat
gtgaatttgtggatttggtatggactttcctccttgtatacgaggctcag
tggtgactagaaaaacatttcctgaatagttgtgtggctggacctgggat
ggacacaatctgactccacagagtctatgatgcccgcgcctataatccca
gcaccagggagacccaggcaagaggactgtcccaccacttaaaggccaga
aatcatgctgcagagctgacagaatgtgtggtaagggatcagctaataca
caatgcagttcagtacatgtgaccagaaggggctcacatctgtccctgct
ccctactgagtaaataattttaaaaaggataactacaattaacaaaataa
aaaggcaagatggcacacacctgaattcctagcacttcgtgtgctgaggc
aggaggattacctcaaattcaatttttagacccttctcagaaaagcaaac
taaaacaaaaacaaggcagtgcacgcgcgcgtgtgtgtgtgtacgtacac
aaggttagctctggaactcactgctttgggcacagaggacagggagagtc
cccgggtgcatgtggaactcatttgtatttcagaaacatgaaaatcacca
ctggtgtttgtgctccttgtaaagtgaaactttgtcgaaatcgctttgta
cttgggagtaacagccacatgattcaccatgaaatgaagtctggaaaatc
attttggataaatgggcctataattcaatagaatttccatgacaacacag
gctgcaacactcactacaataaaagtataaatcattcaccaccactagaa
attggcaatatgtctccctctcgaagtgtgaggagtcagagttcaagttg
ttactcactcgcccagtccgtaagactttactcttacttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_12700895_12702001
seq2: B6Ng01-042G03.b_43_1143

seq1  GAATTCCAGCAATATCTGCTCCCTAGTATGACTGAGCAGTCTTTCTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAATATCTGCTCCCTAGTATGACTGAGCAGTCTTTCTTCTG  50

seq1  CTTTATCAATCTACCTTGCTTCATATCTAGCTGTGGAAGAACCAGTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCAATCTACCTTGCTTCATATCTAGCTGTGGAAGAACCAGTACAT  100

seq1  GAATCATGGGCAGCTAGTGCTTCCCCTTCCCATCTCTGGACTTAAGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATGGGCAGCTAGTGCTTCCCCTTCCCATCTCTGGACTTAAGGTGG  150

seq1  CTCGGTATTATAGCTGCATTATCTTTTGCTATGGCCTCTTTTTTCTACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTATTATAGCTGCATTATCTTTTGCTATGGCCTCTTTTTTCTACTT  200

seq1  TAAGTATCGCCTTTTTTGTACTTGCATTTTCTCAACCAAATTGGTTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATCGCCTTTTTTGTACTTGCATTTTCTCAACCAAATTGGTTGTGG  250

seq1  GTGAAGACCATTGATTGCTGTGCTCAGTGTGGACTTGGCGGCCATGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGACCATTGATTGCTGTGCTCAGTGTGGACTTGGCGGCCATGAAGT  300

seq1  TCCCTGTAAGATCACCCTGCATCTGACCTTTTCGTCTGGGTCTTGCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTAAGATCACCCTGCATCTGACCTTTTCGTCTGGGTCTTGCCTTT  350

seq1  GTCCTTGGCCTTGTTCCTCACTTCCTTTCTTCATATCAGCGCTGGCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGGCCTTGTTCCTCACTTCCTTTCTTCATATCAGCGCTGGCATTC  400

seq1  TTGAGAGGCAGCCAGGGACAGACTGCCCAAGCCCTGTGGGATCGCTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGGCAGCCAGGGACAGACTGCCCAAGCCCTGTGGGATCGCTGTCT  450

seq1  AATTTGAACTGCCATTGGCTTCCGGTGGCACTTGGAAGCAGGTCTGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAACTGCCATTGGCTTCCGGTGGCACTTGGAAGCAGGTCTGAGCA  500

seq1  TCTTGGCGATCTCAGGTTCTTCCACAGGATATGACCTTTGACTTGTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCGATCTCAGGTTCTTCCACAGGATATGACCTTTGACTTGTGCTC  550

seq1  TTCCTGTTTTAGCTGCTTTCTGGAGTGTGGCTGCCCCCACCCTCTCACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTTTAGCTGCTTTCTGGAGTGTGGCTGCCCCCACCCTCTCACCC  600

seq1  CACTCCCTCACTGCTACTTCCATTTCCCATGCATCTTCAGCTTTGGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCTCACTGCTACTTCCATTTCCCATGCATCTTCAGCTTTGGTTTG  650

seq1  TCTGTGCCCCATAGCTATCTTCATTACCTCCTTTGATGTTCTTTTCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCCCATAGCTATCTTCATTACCTCCTTTGATGTTCTTTTCTACA  700

seq1  CTTTATTTCTGTAAACTAATAATTAATATATTATGTGTTTAAAGATAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTCTGTAAACTAATAATTAATATATTATGTGTTTAAAGATAAAA  750

seq1  AAGGCAGTGGAGAGCTGAGGTAGGTCTCTGGTGAACTGCAGAAGGCTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGTGGAGAGCTGAGGTAGGTCTCTGGTGAACTGCAGAAGGCTAGA  800

seq1  GTCCTGTGCCTTTATTGTTTCCTAACGTCTTCCATACTAGTTACTTCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTGCCTTTATTGTTTCCTAACGTCTTCCATACTAGTTACTTCTCC  850

seq1  TCTCCCTATGATCAAGTACTCAGTTTGAGGATACAGTCCATCACAGCAGG  900
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  TCTCCCTATGATCAAGTACTCAGTTTGAGGATACAGTTCATCACAGCAAG  900

seq1  GATTTCAAGGCAGCAGGAGCTTGAAGCAGTTGGTCACAATGTATTCTCAA  950
      ||||||||||||||| ||||||||||||||||||||| |||||||||  |
seq2  GATTTCAAGGCAGCA-GAGCTTGAAGCAGTTGGTCAC-ATGTATTCTTCA  948

seq1  TTCAGGAAAAACAGTCTTATT-CTCTGCTGGCTTTCTCCTTTGTACAGTC  999
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTCAGGAAAAACAGTCTTATTCCTCTGCTGGCTTTCTCCTTTGTACAGTC  998

seq1  TATGACGAAAGAGCTGTCTACTCAGAATGATGCAGCCCATCTCCATTAAC  1049
      |||||||||||||||||||||| |||||||||||| |||||| |||||||
seq2  TATGACGAAAGAGCTGTCTACTTAGAATGATGCAG-CCATCTTCATTAAC  1047

seq1  CTAATAAAGGAAGTCCCTTGCTGGCCTGCCCAGAGGTTGCCCACATCTAG  1099
      ||| |||||||||| ||||||||  ||||||  ||||||||| |||| ||
seq2  CTATTAAAGGAAGT-CCTTGCTG--CTGCCCGAAGGTTGCCC-CATCCAG  1093

seq1  ACAACCCC  1107
      ||||||||
seq2  ACAACCCC  1101

seq1: chr14_12858684_12859638
seq2: B6Ng01-042G03.g_66_1007 (reverse)

seq1  GAGAAGTAAGGAGTAAAGTCTAACGGGAAACTGGGGCGAGTGAGTAACAA  50
      ||||||||| ||||||||||| ||||   ||| |||||||||||||||||
seq2  GAGAAGTAA-GAGTAAAGTCTTACGG---ACT-GGGCGAGTGAGTAACAA  45

seq1  CCTGAACTCTGGGCTCCTCACACTTCGAGACGGGAGACATATTGCCAATT  100
      | |||||||| | ||||||||||||||||| |||||||||||||||||||
seq2  CTTGAACTCT-GACTCCTCACACTTCGAGA-GGGAGACATATTGCCAATT  93

seq1  TCTAGTTGGTGTTGAATGATTTATAACTTTTTATTTGTAGTTGAGTGTTG  150
      ||||| ||||| |||||||||||| ||||||   |||||| |||||||||
seq2  TCTAG-TGGTGGTGAATGATTTAT-ACTTTT--ATTGTAG-TGAGTGTTG  138

seq1  CAGCCTGTGTTGTCATGGAAATTCTATTGAATTTATAGGCCCATTTATCC  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGCCTGTGTTGTCATGGAAATTCTATTGAA-TTATAGGCCCATTTATCC  187

seq1  AAAATGATTTTCCAGACTTCATTTCATGGTGAATCATGTGGCTGTTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATTTTCCAGACTTCATTTCATGGTGAATCATGTGGCTGTTACTC  237

seq1  CCAAGTACAAAGCGATTTCGACAAAGTTTCACTTTACAAGGAGCACAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTACAAAGCGATTTCGACAAAGTTTCACTTTACAAGGAGCACAAAC  287

seq1  ACCAGTGGTGATTTTCATGTTTCTGAAATACAAATGAGTTCCACATGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGGTGATTTTCATGTTTCTGAAATACAAATGAGTTCCACATGCAC  337

seq1  CCGGGGACTCTCCCTGTCCTCTGTGCCCAAAGCAGTGAGTTCCAGAGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGACTCTCCCTGTCCTCTGTGCCCAAAGCAGTGAGTTCCAGAGCTA  387

seq1  ACCTTGTGTACGTACACACACACACGCGCGCGTGCACTGCCTTGTTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTGTACGTACACACACACACGCGCGCGTGCACTGCCTTGTTTTTG  437

seq1  TTTTAGTTTGCTTTTCTGAGAAGGGTCTAAAAATTGAATTTGAGGTAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTTGCTTTTCTGAGAAGGGTCTAAAAATTGAATTTGAGGTAATC  487

seq1  CTCCTGCCTCAGCACACGAAGTGCTAGGAATTCAGGTGTGTGCCATCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCTCAGCACACGAAGTGCTAGGAATTCAGGTGTGTGCCATCTTG  537

seq1  CCTTTTTATTTTGTTAATTGTAGTTATCCTTTTTAAAATTATTTACTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTATTTTGTTAATTGTAGTTATCCTTTTTAAAATTATTTACTCAG  587

seq1  TAGGGAGCAGGGACAGATGTGAGCCCCTTCTGGTCACATGTACTGAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGCAGGGACAGATGTGAGCCCCTTCTGGTCACATGTACTGAACTG  637

seq1  CATTGTGTATTAGCTGATCCCTTACCACACATTCTGTCAGCTCTGCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGTATTAGCTGATCCCTTACCACACATTCTGTCAGCTCTGCAGCA  687

seq1  TGATTTCTGGCCTTTAAGTGGTGGGACAGTCCTCTTGCCTGGGTCTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTGGCCTTTAAGTGGTGGGACAGTCCTCTTGCCTGGGTCTCCCT  737

seq1  GGTGCTGGGATTATAGGCGCGGGCATCATAGACTCTGTGGAGTCAGATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGGATTATAGGCGCGGGCATCATAGACTCTGTGGAGTCAGATTG  787

seq1  TGTCCATCCCAGGTCCAGCCACACAACTATTCAGGAAATGTTTTTCTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATCCCAGGTCCAGCCACACAACTATTCAGGAAATGTTTTTCTAGT  837

seq1  CACCACTGAGCCTCGTATACAAGGAGGAAAGTCCATACCAAATCCACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGAGCCTCGTATACAAGGAGGAAAGTCCATACCAAATCCACAAA  887

seq1  TTCACATGCAGCTGAGGTCCTCTGATGACTGCTGCTCAGGCCAGAGAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGCAGCTGAGGTCCTCTGATGACTGCTGCTCAGGCCAGAGAGAG  937

seq1  AATTC  955
      |||||
seq2  AATTC  942