BAC Information

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BAC

Clone NameB6Ng01-042J18
Chromosome14 (Build37)
Map Location 78,522,190 - 78,666,633
singlet/doubletdoublet
Overlap genenone
Upstream geneD230005D02Rik, LOC100043755, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1, AU021034
Downstream geneTnfsf11, LOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042J18.bB6Ng01-042J18.g
ACCDH868932DH868933
length1,1081,154
definitionDH868932|Mus musculus domesticus DNA, BAC clone: B6Ng01-042J18, 5' end.DH868933|Mus musculus domesticus DNA, BAC clone: B6Ng01-042J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,665,523 - 78,666,633)(78,522,190 - 78,523,351)
sequence
gaattcccatccgtctttttctgggctacataacatggagtgagtggaaa
gtggtaagtttacattgagaattctttcaggttcagggcaactacatggg
cccccacaggagtggggtgaagaccacatgggcagagactacgatgctgt
gagatcaggatcctagaccagttttcaatgatcatttttaacttggggta
aaagcttaactttcctctaacgccacttcattgttcataaaattgaaatc
ataacggccatctaatgtacctctctaataaccaagtaacttatcttctg
ggtttccgagagttcatgtaaacaacacatgtagatatcgagaatgaagt
gaacgagggactgagtcggtcagcgctcacagctttcctgagctttctcc
acgtctgctcattcttgaccctggtttggtgccacctcctcaccaatgag
cattcctaggggacacccaagggaccagtcagttcttgcccaggtttctg
gagtgaactttgtgttcagatcattacaacattaatggaaaaaaaatgga
gagcaggcaggagaagcaagttagggatttactggcagcataataatggc
agcaaatgacaatagagtgtgttcgtggaaaatacttggaaaagcgagat
gctatgtgttctcactacaaaaggataactgtacaaaataatgcacttaa
caacgcatgtgtatttcaaagcctcatgatgtataggacaaatgcatgta
attttgtttgtcaactttaaaactatgaaataaagaactattctgtttag
atttgacatttcaaatatttttctcttgttgagctctggtttcaccatcc
tgagtgtgagtttatttctttcaaattctccctttctaaagtggaagaga
aaatagagggcagaaaagaggttcccctgatctcagttgcaaaggatcat
tcgctcgctctgacagtggagcccacagtgctctctaagaatcttgaatc
aggcctgggggcagtcttttccttctctctgagcccatctagatgtagct
gatgtgtatattcttgtggtgggggctgatcagttgcatggggggcctcg
ttgtgaaa
gaattccaggaggcaaagaatgagttggaaggtgggtaagcaagacatgg
gagtctgctgctcacaggtccactggcttcactcctcttgtttgctgcat
ggtggagatcagctcccacaggcctgtactcaaccactctgtcttccatt
gtcacggtacagaaaaggaagcctaggaggcaagccctcagtctgaggac
ttcacgtctcttcagccataaatgagacaaaatagagtaaagtgggtacc
accaggcacagggtgacatggttcctggagctagccttggctcttcccta
attccaaaccagagaaaaataagccagatacagggtctggtttgaagtca
gctggcatgacgttatctgaccagagtatcaccacctccttcacatacaa
acagcaccgaattccccctccccccaagctttccaagttcatctgtgagt
tgacttccagtctgaggtcttccaccatgtgctagaatttctcacctaag
accaggccagcactcacaccctcagccttgcttggccctgggaattcact
atagtcttcttctctgaggatgctctttagtgatggggaaataatcactc
aattgctggcgtttccaactcagtgccttagaaaaatctgtcaacacgac
tgtcttaaaatctgtgaactactaccaggtaccaaggaggtcacctttct
tgaagaaccaaagcaagggagtataaataagacttactggtggatctctg
gtcaaaaagcaaggggcttccctgtactgagacccatagaccagcctgta
tcttccctctgctctgttttgtttacactgatccatccagggacagctct
cagacccccagaggtcttagtcatccacgagttccatcacctccaagaac
ttccattgcatgtccctctgcccctactgaaggaaagccatgatagtctt
acatccaggtccttctcagcttccagactactctgtcacttcttaagtac
ccatctattggcggaggaagaagatcgtgccctgcccttcactttcttct
gcctgtacccatgaaaacaggacaatacggtctccttttgtcccaagctt
ctgcccattcggactctggagtcaatgcccttccttagcatagtcttcta
tctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_78665523_78666633
seq2: B6Ng01-042J18.b_45_1152 (reverse)

seq1  TTTCACCACGAGGCCCCCCATGGCACTTGGATCAG-CCCCACCACA--GA  47
      |||||| |||||||||||||||  |||  |||||| ||||||||||   |
seq2  TTTCACAACGAGGCCCCCCATGCAACT--GATCAGCCCCCACCACAAGAA  48

seq1  TATACACATCAGCTACATCTAGATGGGCTCAGAGAGAGGGAAAAGACTTG  97
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  TATACACATCAGCTACATCTAGATGGGCTCAGAGAGAAGGAAAAGAC-TG  97

seq1  GCCCCAGGCCCTGATTCAAGGATTCTTAGAGAGCACTGTGGGCTCCACTG  147
       ||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  CCCCCAGG-CCTGATTCAA-GATTCTTAGAGAGCACTGTGGGCTCCACTG  145

seq1  TCAGAGCGAGCGAATGATCCTTTGCAACTGAGATTCAGGGGAACCTCTTT  197
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCAGAGCGAGCGAATGATCCTTTGCAACTGAGA-TCAGGGGAACCTCTTT  194

seq1  TCTGCCCTCTATTTTCTCTTCCACTTTAGAAAGGGAGAATTTGAAAGAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTCTATTTTCTCTTCCACTTTAGAAAGGGAGAATTTGAAAGAAA  244

seq1  TAAACTCACACTCAGGATGGTGAAACCAGAGCTCAACAAGAGAAAAATAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCACACTCAGGATGGTGAAACCAGAGCTCAACAAGAGAAAAATAT  294

seq1  TTGAAATGTCAAATCTAAACAGAATAGTTCTTTATTTCATAGTTTTAAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGTCAAATCTAAACAGAATAGTTCTTTATTTCATAGTTTTAAAG  344

seq1  TTGACAAACAAAATTACATGCATTTGTCCTATACATCATGAGGCTTTGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAACAAAATTACATGCATTTGTCCTATACATCATGAGGCTTTGAA  394

seq1  ATACACATGCGTTGTTAAGTGCATTATTTTGTACAGTTATCCTTTTGTAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATGCGTTGTTAAGTGCATTATTTTGTACAGTTATCCTTTTGTAG  444

seq1  TGAGAACACATAGCATCTCGCTTTTCCAAGTATTTTCCACGAACACACTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACACATAGCATCTCGCTTTTCCAAGTATTTTCCACGAACACACTC  494

seq1  TATTGTCATTTGCTGCCATTATTATGCTGCCAGTAAATCCCTAACTTGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCATTTGCTGCCATTATTATGCTGCCAGTAAATCCCTAACTTGCT  544

seq1  TCTCCTGCCTGCTCTCCATTTTTTTTCCATTAATGTTGTAATGATCTGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCCTGCTCTCCATTTTTTTTCCATTAATGTTGTAATGATCTGAA  594

seq1  CACAAAGTTCACTCCAGAAACCTGGGCAAGAACTGACTGGTCCCTTGGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGTTCACTCCAGAAACCTGGGCAAGAACTGACTGGTCCCTTGGGT  644

seq1  GTCCCCTAGGAATGCTCATTGGTGAGGAGGTGGCACCAAACCAGGGTCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTAGGAATGCTCATTGGTGAGGAGGTGGCACCAAACCAGGGTCAA  694

seq1  GAATGAGCAGACGTGGAGAAAGCTCAGGAAAGCTGTGAGCGCTGACCGAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGCAGACGTGGAGAAAGCTCAGGAAAGCTGTGAGCGCTGACCGAC  744

seq1  TCAGTCCCTCGTTCACTTCATTCTCGATATCTACATGTGTTGTTTACATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCCTCGTTCACTTCATTCTCGATATCTACATGTGTTGTTTACATG  794

seq1  AACTCTCGGAAACCCAGAAGATAAGTTACTTGGTTATTAGAGAGGTACAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCGGAAACCCAGAAGATAAGTTACTTGGTTATTAGAGAGGTACAT  844

seq1  TAGATGGCCGTTATGATTTCAATTTTATGAACAATGAAGTGGCGTTAGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGCCGTTATGATTTCAATTTTATGAACAATGAAGTGGCGTTAGAG  894

seq1  GAAAGTTAAGCTTTTACCCCAAGTTAAAAATGATCATTGAAAACTGGTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTAAGCTTTTACCCCAAGTTAAAAATGATCATTGAAAACTGGTCT  944

seq1  AGGATCCTGATCTCACAGCATCGTAGTCTCTGCCCATGTGGTCTTCACCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCTGATCTCACAGCATCGTAGTCTCTGCCCATGTGGTCTTCACCC  994

seq1  CACTCCTGTGGGGGCCCATGTAGTTGCCCTGAACCTGAAAGAATTCTCAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGTGGGGGCCCATGTAGTTGCCCTGAACCTGAAAGAATTCTCAA  1044

seq1  TGTAAACTTACCACTTTCCACTCACTCCATGTTATGTAGCCCAGAAAAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACTTACCACTTTCCACTCACTCCATGTTATGTAGCCCAGAAAAAG  1094

seq1  ACGGATGGGAATTC  1111
      ||||||||||||||
seq2  ACGGATGGGAATTC  1108

seq1: chr14_78522190_78523351
seq2: B6Ng01-042J18.g_65_1218

seq1  GAATTCCAGGAGGCAAAGAATGAGTTGGAAGGTGGGTAAGCAAGACATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGGCAAAGAATGAGTTGGAAGGTGGGTAAGCAAGACATGG  50

seq1  GAGTCTGCTGCTCACAGGTCCACTGGCTTCACTCCTCTTGTTTGCTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGCTGCTCACAGGTCCACTGGCTTCACTCCTCTTGTTTGCTGCAT  100

seq1  GGTGGAGATCAGCTCCCACAGGCCTGTACTCAACCACTCTGTCTTCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGATCAGCTCCCACAGGCCTGTACTCAACCACTCTGTCTTCCATT  150

seq1  GTCACGGTACAGAAAAGGAAGCCTAGGAGGCAAGCCCTCAGTCTGAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGGTACAGAAAAGGAAGCCTAGGAGGCAAGCCCTCAGTCTGAGGAC  200

seq1  TTCACGTCTCTTCAGCCATAAATGAGACAAAATAGAGTAAAGTGGGTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGTCTCTTCAGCCATAAATGAGACAAAATAGAGTAAAGTGGGTACC  250

seq1  ACCAGGCACAGGGTGACATGGTTCCTGGAGCTAGCCTTGGCTCTTCCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCACAGGGTGACATGGTTCCTGGAGCTAGCCTTGGCTCTTCCCTA  300

seq1  ATTCCAAACCAGAGAAAAATAAGCCAGATACAGGGTCTGGTTTGAAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAACCAGAGAAAAATAAGCCAGATACAGGGTCTGGTTTGAAGTCA  350

seq1  GCTGGCATGACGTTATCTGACCAGAGTATCACCACCTCCTTCACATACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCATGACGTTATCTGACCAGAGTATCACCACCTCCTTCACATACAA  400

seq1  ACAGCACCGAATTCCCCCTCCCCCCAAGCTTTCCAAGTTCATCTGTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACCGAATTCCCCCTCCCCCCAAGCTTTCCAAGTTCATCTGTGAGT  450

seq1  TGACTTCCAGTCTGAGGTCTTCCACCATGTGCTAGAATTTCTCACCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCCAGTCTGAGGTCTTCCACCATGTGCTAGAATTTCTCACCTAAG  500

seq1  ACCAGGCCAGCACTCACACCCTCAGCCTTGCTTGGCCCTGGGAATTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCCAGCACTCACACCCTCAGCCTTGCTTGGCCCTGGGAATTCACT  550

seq1  ATAGTCTTCTTCTCTGAGGATGCTCTTTAGTGATGGGGAAATAATCACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTCTTCTCTGAGGATGCTCTTTAGTGATGGGGAAATAATCACTC  600

seq1  AATTGCTGGCGTTTCCAACTCAGTGCCTTAGAAAAATCTGTCAACACGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGGCGTTTCCAACTCAGTGCCTTAGAAAAATCTGTCAACACGAC  650

seq1  TGTCTTAAAATCTGTGAAACTACTACCAGGTACCAAGGAGGTCACCTTTC  700
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTCTTAAAATCTGTG-AACTACTACCAGGTACCAAGGAGGTCACCTTTC  699

seq1  TTGAAGAACCAAAGCAAGGGAGTATAAATAAGACTTACTGGTGGATCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAACCAAAGCAAGGGAGTATAAATAAGACTTACTGGTGGATCTCT  749

seq1  GGTCAAAAAGCAAGGGGCTTCCCTGTACTGAGACCCATAGACCAGCCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAAAGCAAGGGGCTTCCCTGTACTGAGACCCATAGACCAGCCTGT  799

seq1  ATCTTCCCTCTGCTCTGTTTTGTTTACACTGATCCATCCAGGGACAGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCCTCTGCTCTGTTTTGTTTACACTGATCCATCCAGGGACAGCTC  849

seq1  TCAGACCCCCAGAGGTCTTAGTCATCCACGAGTTCCATCACCTCCAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCCCCAGAGGTCTTAGTCATCCACGAGTTCCATCACCTCCAAGAA  899

seq1  CTTCCATTGCAGGTCCCTCTGCCCCTACTGAAGGGAAAGCCATGATAGTC  950
      ||||||||||| |||||||||||||||||||| |||||||||||||||||
seq2  CTTCCATTGCATGTCCCTCTGCCCCTACTGAA-GGAAAGCCATGATAGTC  948

seq1  TTACATCCAAGGTCCTTCTCAGGCTTCCAGACTACTCTGTCACTTCTTAA  1000
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  TTACATCC-AGGTCCTTCTCA-GCTTCCAGACTACTCTGTCACTTCTTAA  996

seq1  GTACCCATCTATTGGCGGAGGAAGAGAATCGGTGCCCTGCCCTTCACTTT  1050
      |||||||||||||||||||||||||  ||| |||||||||||||||||||
seq2  GTACCCATCTATTGGCGGAGGAAGAAGATC-GTGCCCTGCCCTTCACTTT  1045

seq1  CCTCTG-CTGTACCCAATGAAAACAAGGAC-ATACGGTCTCCTTTTGCCC  1098
      | |||| |||||||| |||||||| ||||| |||||||||||||||| ||
seq2  CTTCTGCCTGTACCC-ATGAAAAC-AGGACAATACGGTCTCCTTTTGTCC  1093

seq1  ACAGGCTTCCCTGCACATTCAGACTCTGAGGTCATTGCCCTTCCTTGGCA  1148
       || ||||  |||| ||||| |||||||  |||| ||||||||||| |||
seq2  -CAAGCTT--CTGCCCATTCGGACTCTGGAGTCAATGCCCTTCCTTAGCA  1140

seq1  TAGTCTTCTATCTG  1162
      ||||||||||||||
seq2  TAGTCTTCTATCTG  1154