BAC Information

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BAC

Clone NameB6Ng01-042P09
Chromosome14 (Build37)
Map Location 93,769,224 - 93,865,659
singlet/doubletdoublet
Overlap genePcdh9
Upstream geneLOC638252, LOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042P09.bB6Ng01-042P09.g
ACCDH869170DH869171
length1,2261,120
definitionDH869170|Mus musculus domesticus DNA, BAC clone: B6Ng01-042P09, 5' end.DH869171|Mus musculus domesticus DNA, BAC clone: B6Ng01-042P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,769,224 - 93,770,475)(93,864,536 - 93,865,659)
sequence
gaattcaagtccaacaggatagaggattcttgtaagataagaatcacctg
gctcttgatgttgttaaaatattgctttatttcttaatttttgtttaaaa
ataatttcaattctatgaaaacgtatcttctttttattgtgaatctatag
tcagagagagagtcatagaatattcataatgcaattagtgaaggtgattt
tagaaacaaagcgtgtacgtctcatatccaatattctgcaaatagaacgc
ttttcaatcaggtactgatttaaagttcatgaagcaaaattgagtcaaac
aaaccagtaactcattacagaaagtatttattctttaagatacatacata
tatttatatgtgtaaatatgtattgagctcattttatagagttagaagat
acgtttcagaatgacaacctatggctgggcagtggtggcacatgccttta
atcccagcacttgggaagcagaggcaggcagatttctgagttcaaggcca
gcctggtctacagagtgagttccagaatgagaacctatcgttttgcagaa
caattgattcccaccaacccttattttggactaataacactttcagatac
gtcctatacttgtaataattaatttaagtataaaacaaaaggctattaat
caccagagtcaagcaacataccatacttcatgatgattcttactttagtt
agaacataaagaaaaaataatttgtttatgaagatagtaaactaagttat
tacagtgaataggaatcagaaaatgagagatatatgattataattcccac
ttagggttttatagaggtttggtgctggtattagcctggtacatagtcat
atatataaaaattaccattagtattattacagtaagatgtgcaaagacat
aggttttatagggatctacatacacatgcattttgtgagcttatagtaag
gtcatagtttcaaccaaaaatacatggttcatgaatgttggattggtgac
gctaaggagttagaacatgcctactcttgcagtgacttagttgagttcag
aatccatggtgttcacacgaactatattacattctgagcatcttctgaca
ttgtgtaagatctggctacatggggtaccattacgtatctcattgtacac
cacgcaacaccacattatcgatattggtatattctcatagtgtaataatg
gaacttgcctgtctggactccagcta
gaattctcattctccacaaatttaacaacaattaagttgtgttacgctga
tcaaaattttcaacaaaatgcagaagtaacatcctagaagccttggaaaa
gtaaagtggtacttacctccaataggaaacttcctaccaaggtcctaggt
aaccagagagatggaactttatttggcttggcatccaatttcactttaat
gtttctatgtcttcttaactctttcaaatgtatacagtccatgtatacta
gctctctcagtgttttaaaatttccctagtatgttgtattctttcactgc
tttttatttttattcttattgtattctttgcacagaattattctccattc
cactcccatttcgaaaaattccatccatttcgcaaaatcttctaccacaa
cggttaaaattgtgatcctttttatagtcttaaactgcttttttctatta
cttctactgtgctacttcttactaattcttgtcaaataacaatgcattgt
cctggatagtttgtattaatcaaacaacataatataattctgggtttcca
tgtctgtccctcctagactttgtgctccttgaaggcaaaataatttagtt
tcattatttttacaatgtatggaagaagttcaataaatatttgttgagca
agttaatttcttagggctaaaaattctattctgaataatgataaaaatat
ttattatctatgcaagtttcttatagaaaaccttgaatttatgtttacct
ttcctcaatgtcatatcaaactaaaaagtgatcatttttatttaattttt
catagaatgaaattaagtggtttagagaagctatcattacctacagtagg
tcgggttcctacttggggtactttactaatgaagaaaacattcatttatt
ttttttaagcatactactatcatattctgtcatgtgatttcccatggaat
gctataagttagtcagtaaggatctatcatatttgttctcccactggttc
cttacacactgaaaaaatgtcatggcatatatatagtagcacttgctgaa
gaaatgcttttccttgacgtattcttcccattggatcaagaattggcatg
tcacataatgctagctgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_93769224_93770475
seq2: B6Ng01-042P09.b_43_1268

seq1  GAATTCAAGTCCAACAGGATAGAGGATTCTTGTAAGATAAGAATCACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCCAACAGGATAGAGGATTCTTGTAAGATAAGAATCACCTG  50

seq1  GCTCTTGATGTTGTTAAAATATTGCTTTATTTCTTAATTTTTGTTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGATGTTGTTAAAATATTGCTTTATTTCTTAATTTTTGTTTAAAA  100

seq1  ATAATTTCAATTCTATGAAAACGTATCTTCTTTTTATTGTGAATCTATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCAATTCTATGAAAACGTATCTTCTTTTTATTGTGAATCTATAG  150

seq1  TCAGAGAGAGAGTCATAGAATATTCATAATGCAATTAGTGAAGGTGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAGAGAGTCATAGAATATTCATAATGCAATTAGTGAAGGTGATTT  200

seq1  TAGAAACAAAGCGTGTACGTCTCATATCCAATATTCTGCAAATAGAACGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACAAAGCGTGTACGTCTCATATCCAATATTCTGCAAATAGAACGC  250

seq1  TTTTCAATCAGGTACTGATTTAAAGTTCATGAAGCAAAATTGAGTCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATCAGGTACTGATTTAAAGTTCATGAAGCAAAATTGAGTCAAAC  300

seq1  AAACCAGTAACTCATTACAGAAAGTATTTATTCTTTAAGATACATACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGTAACTCATTACAGAAAGTATTTATTCTTTAAGATACATACATA  350

seq1  TATTTATATGTGTAAATATGTATTGAGCTCATTTTATAGAGTTAGAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATATGTGTAAATATGTATTGAGCTCATTTTATAGAGTTAGAAGAT  400

seq1  ACGTTTCAGAATGACAACCTATGGCTGGGCAGTGGTGGCACATGCCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTCAGAATGACAACCTATGGCTGGGCAGTGGTGGCACATGCCTTTA  450

seq1  ATCCCAGCACTTGGGAAGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTTGGGAAGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCA  500

seq1  GCCTGGTCTACAGAGTGAGTTCCAGAATGAGAACCTATCGTTTTGCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACAGAGTGAGTTCCAGAATGAGAACCTATCGTTTTGCAGAA  550

seq1  CAATTGATTCCCACCAACCCTTATTTTGGACTAATAACACTTTCAGATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGATTCCCACCAACCCTTATTTTGGACTAATAACACTTTCAGATAC  600

seq1  GTCCTATACTTGTAATAATTAATTTAAGTATAAAACAAAAGGCTATTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATACTTGTAATAATTAATTTAAGTATAAAACAAAAGGCTATTAAT  650

seq1  CACCAGAGTCAAGCAACATACCATACTTCATGATGATTCTTACTTTAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAGTCAAGCAACATACCATACTTCATGATGATTCTTACTTTAGTT  700

seq1  AGAACATAAAGAAAAAATAATTTGTTTATGAAGATAGTAAACTAAGTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATAAAGAAAAAATAATTTGTTTATGAAGATAGTAAACTAAGTTAT  750

seq1  TACAGTGAATAGGAATCAGAAAATGAGAGATATATGATTATAATTCCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGAATAGGAATCAGAAAATGAGAGATATATGATTATAATTCCCAC  800

seq1  TTAGGGTTTTATAGAGGTTTGGTGCTGGTATTAGCCTGGTACATAGTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTTTTATAGAGGTTTGGTGCTGGTATTAGCCTGGTACATAGTCAT  850

seq1  ATATATAAAAATTACCATAAGTATTATTACAGTAAGATGTGCAAAGACAT  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATATATAAAAATTACCATTAGTATTATTACAGTAAGATGTGCAAAGACAT  900

seq1  AGGTTTTATA-GGATCTACATACACATGCATTTTGTGAGCTTTATAGTAA  949
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  AGGTTTTATAGGGATCTACATACACATGCATTTTGTGAGC-TTATAGTAA  949

seq1  GGTCATAGTTTCAACCAAAAATACATGGTTCATGAATGTTGGATTGGTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATAGTTTCAACCAAAAATACATGGTTCATGAATGTTGGATTGGTGA  999

seq1  CGGCTAAGGAGTTAAGAACATGCCTACTCTTGCAGGTGACTTAGGTTGAG  1049
      | ||||||||||| |||||||||||||||||||| |||||||| ||||||
seq2  C-GCTAAGGAGTT-AGAACATGCCTACTCTTGCA-GTGACTTA-GTTGAG  1045

seq1  TTCCAGAATCACATGGTGGTTCACACGAACCTATAATTACCATTCTGAGC  1099
      || ||||||| |||||| ||||||||||| |||| |||| ||||||||||
seq2  TT-CAGAATC-CATGGT-GTTCACACGAA-CTAT-ATTA-CATTCTGAGC  1089

seq1  ATCTTTCTGACATTG-GTGAGATCCTGCCTACATGGGGTACACATACAGT  1148
      ||| ||||||||||| || |||| ||| ||||||||||||| |||   ||
seq2  ATC-TTCTGACATTGTGTAAGAT-CTGGCTACATGGGGTAC-CATTACGT  1136

seq1  ATCTCA-TGTACACACACACACACACACAATTATCAATTATGTATATATT  1197
      |||||| ||||||| ||| || ||||   |||||| | |||   ||||||
seq2  ATCTCATTGTACAC-CACGCA-ACACCACATTATCGA-TATTGGTATATT  1183

seq1  TTTAAATTATCCATTTAAAACAAATGGAGCATTCTCCCTGTCT-GACTCA  1246
       | | | | |         |  |||||| |    | ||||||| ||||| 
seq2  CTCATAGTGT---------AATAATGGAAC---TTGCCTGTCTGGACTC-  1220

seq1  CAGCTA  1252
      ||||||
seq2  CAGCTA  1226

seq1: chr14_93864536_93865659
seq2: B6Ng01-042P09.g_70_1189 (reverse)

seq1  AGACAGCTAGCACTTATGTGACATGCCCACTCTTGATCC-ATGGGAAG-A  48
      |||||||||||| |||||||||||||| | ||||||||| |||||||| |
seq2  AGACAGCTAGCA-TTATGTGACATGCCAATTCTTGATCCAATGGGAAGAA  49

seq1  TACGTCAAGGAAAGCTATTTCTTCAGCCAGTGCTACTTATATATATTGCC  98
      |||||||||||||   ||||||||||| |||||||| |||||||| ||||
seq2  TACGTCAAGGAAAAGCATTTCTTCAGCAAGTGCTAC-TATATATA-TGCC  97

seq1  ATGACATTTTTTTCAGTGTGTAAGGAACCAGTGGGAGAACAAATATGATA  148
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACA-TTTTTTCAGTGTGTAAGGAACCAGTGGGAGAACAAATATGATA  146

seq1  GATCCTTAACTGACTAACTTATGAGCATTCCATGGGAAATCACATTGACA  198
      ||||||| |||||||||||||| ||||||||||||||||||||| |||||
seq2  GATCCTT-ACTGACTAACTTAT-AGCATTCCATGGGAAATCACA-TGACA  193

seq1  GAATATGATAGTAGTTATGCTTAAAAAAAATAAATGAATGTTTTCTTCAT  248
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  GAATATGATAGTAG-TATGCTTAAAAAAAATAAATGAATGTTTTCTTCA-  241

seq1  TTAGTAAAGTA-CCCAAGTAGG-ACCCGACCTACTGTAGGTAATGATAGC  296
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  TTAGTAAAGTACCCCAAGTAGGAACCCGACCTACTGTAGGTAATGATAGC  291

seq1  TTCTCTAAACCACTTAATTTCATTCTATGAAAAATTAAATAAAAATGATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAAACCACTTAATTTCATTCTATGAAAAATTAAATAAAAATGATC  341

seq1  ACTTTTTAGTTTGATATGACATTGAGGAAAGGTAAACAT-AATTCAAGGT  395
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTTTTTAGTTTGATATGACATTGAGGAAAGGTAAACATAAATTCAAGGT  391

seq1  TTTCTATAAGAAACTTGCATAGATAATAAATATTTTTATCATTATTCAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATAAGAAACTTGCATAGATAATAAATATTTTTATCATTATTCAGA  441

seq1  ATAGAATTTTTAGCCCTAAGAAATTAACTTGCTCAACAAATATTTATTGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTTTTAGCCCTAAGAAATTAACTTGCTCAACAAATATTTATTGA  491

seq1  ACTTCTTCCATACATTGTAAAAATAATGAAACTAAATTATTTTGCCTTCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCCATACATTGTAAAAATAATGAAACTAAATTATTTTGCCTTCA  541

seq1  AGGAGCACAAAGTCTAGGAGGGACAGACATGGAAACCCAGAATTATATTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCACAAAGTCTAGGAGGGACAGACATGGAAACCCAGAATTATATTA  591

seq1  TGTTGTTTGATTAATACAAACTATCCAGGACAATGCATTGTTATTTGACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTGATTAATACAAACTATCCAGGACAATGCATTGTTATTTGACA  641

seq1  AGAATTAGTAAGAAGTAGCACAGTAGAAGTAATAGAAAAAAGCAGTTTAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAGTAAGAAGTAGCACAGTAGAAGTAATAGAAAAAAGCAGTTTAA  691

seq1  GACTATAAAAAGGATCACAATTTTAACCGTTGTGGTAGAAGATTTTGCGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATAAAAAGGATCACAATTTTAACCGTTGTGGTAGAAGATTTTGCGA  741

seq1  AATGGATGGAATTTTTCGAAATGGGAGTGGAATGGAGAATAATTCTGTGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATGGAATTTTTCGAAATGGGAGTGGAATGGAGAATAATTCTGTGC  791

seq1  AAAGAATACAATAAGAATAAAAATAAAAAGCAGTGAAAGAATACAACATA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATACAATAAGAATAAAAATAAAAAGCAGTGAAAGAATACAACATA  841

seq1  CTAGGGAAATTTTAAAACACTGAGAGAGCTAGTATACATGGACTGTATAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGAAATTTTAAAACACTGAGAGAGCTAGTATACATGGACTGTATAC  891

seq1  ATTTGAAAGAGTTAAGAAGACATAGAAACATTAAAGTGAAATTGGATGCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAGAGTTAAGAAGACATAGAAACATTAAAGTGAAATTGGATGCC  941

seq1  AAGCCAAATAAAGTTCCATCTCTCTGGTTACCTAGGACCTTGGTAGGAAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAATAAAGTTCCATCTCTCTGGTTACCTAGGACCTTGGTAGGAAG  991

seq1  TTTCCTATTGGAGGTAAGTACCACTTTACTTTTCCAAGGCTTCTAGGATG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATTGGAGGTAAGTACCACTTTACTTTTCCAAGGCTTCTAGGATG  1041

seq1  TTACTTCTGCATTTTGTTGAAAATTTTGATCAGCGTAACACAACTTAATT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTGCATTTTGTTGAAAATTTTGATCAGCGTAACACAACTTAATT  1091

seq1  GTTGTTAAATTTGTGGAGAATGAGAATTC  1124
      |||||||||||||||||||||||||||||
seq2  GTTGTTAAATTTGTGGAGAATGAGAATTC  1120