BAC Information

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BAC

Clone NameB6Ng01-043D21
Chromosome14 (Build37)
Map Location 30,988,946 - 31,195,454
singlet/doubletdoublet
Overlap geneCacna1d
Upstream geneCacna2d3, Ppia-ps15, EG665431, Selk, Actr8, Il17rb, Chdh
Downstream geneLOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043D21.bB6Ng01-043D21.g
ACCDH869362DH869363
length1,1531,026
definitionDH869362|Mus musculus domesticus DNA, BAC clone: B6Ng01-043D21, 5' end.DH869363|Mus musculus domesticus DNA, BAC clone: B6Ng01-043D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,194,302 - 31,195,454)(30,988,946 - 30,990,001)
sequence
gaattcaatcttctaatactgttcatgaggcatgataatatataatttta
tctcccatagtgtggctgtcaggcttcagcagcagtattatgctgattgc
ataattagctgggaagttctgaaagagtgtgtataaaattaacagtaatt
ttccttaaatgtctgatagaatttaccagtgaaacaatatagatttgatg
atttctttgtatataggcctttgacaatatattcaattttaaacatttga
aatattaaaaatttctacttggttttgtgttaatttcaggaagtcttatt
ttttataggcagttatttcacttaatctgttattttgttaaactatgtac
attttctacttattttcttctttgttaaactacttatatttcctgatact
acttttcttccttacactgtcattttttagtatccctgggagatactaaa
tctcccccattgacagcaaaatttatggatgctcacattatgtaaaaata
ccatagttatttttatagaatctatacatacctgcctgtatattttagat
tagctcccgatcatttgtcatagtggatacaatggaactcctatgtaaat
agttgtcccatatgacttagagggcaacaccaagaaaaagctacatatgt
ttattacagacatatatttttccgaaacacttttgatccttagttggttg
aatatgctaagacagaacccttcgatgggtagaaactgtagagcggaccc
tttgtttacaatattggacgtttattttgttcatcctaatcagaagtctg
tcaatttttttctcattaaaaaattagttcttttgagcagtatacctctg
tttcaattaagacacattaaaaggtaaagttagttctttgaagatttcat
ccaataccttttgatctactttcatagcttctcctagatctgccttccct
tcccctgcccacccaactctgtgtcttcctttaaaaagccccattaagta
ccagtttgtggcagctatttatattctgggtatgtggccatttactagac
atggattgacccactaggagccacacccttaaaacgaataaacccaaacc
aaagaagaccaccttaaaaagatttccagcacgctactcatgccaatagc
tct
gaattcagagttcaggatccataaaggaaatccagccaagacagagccat
aagcatccagttacacttcctccatggctggctccaggctcaagagcaga
actgatggctggaatggggatcacatccctgcaaggccaaacacatttac
tgttaagcttcattaaaaagttcacatatgcctgcctccaatcaaggacg
agagacacttgctggagggccccgaggatgctcacagcatcttcatacat
ccctgtctccatctcaaatctcagatctatgaagggatagagactagaga
ctagcgtaatgttgaggaattacatgcaccctccatcataatagaggtgt
tatgcaattcatagaggatgtaattcaagtgctaaattattaactatgtt
atggtcgtggcaacagtagagcatttcattatcatgggtgacactgaaac
attctcagaaaagcacgtggaagctggtctttctgagtgcatgaagtttt
ctcttctgtagccacacagtcctgaaattgtctctgcacgacaacaggaa
gattattgtgagaaaatcaatgtgcaaaaatgtaagataaagtagggaat
cgtctatccgtcaaggatgtgggatcagagtgcggcagttcaccgtgacg
atagggagaagacagagctgaggaagtcacagagttcacttgttttaaaa
caagaaaaaactgccctactgtttgagggagggaaaagcagagtttgggc
ttttgtggacgatatgctctagtttatcagccattccgaggggggactga
aatggaggctctgctcggctcagagctgtgacttaggagacacaagtgaa
atggacactccacccaagctgggagctgcatgcctgatgatacccatcct
ttctccaggagaagggattgtttgtgggctataatttaacattagtgtcc
acagatgcgtcgtgcgtgcatacacacaccccacacacacatacaacaca
caccacacatacacacatcacacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_31194302_31195454
seq2: B6Ng01-043D21.b_47_1199 (reverse)

seq1  AGAGCTATTGGCAATGGGTAGC-TGCTGGAATTTCTTTTTAGAGTTTGTT  49
      |||||||||||| ||| ||||| ||||||||  ||||||||  |  || |
seq2  AGAGCTATTGGC-ATGAGTAGCGTGCTGGAA-ATCTTTTTAAGG--TGGT  46

seq1  CTTCTTTTGTTTGGTTTTATTCTGTTTTTAAGGGTGTGGCTCCTAGTGGG  99
      ||||||| |||||| |||||||   |||||||||||||||||||||||||
seq2  CTTCTTTGGTTTGGGTTTATTC--GTTTTAAGGGTGTGGCTCCTAGTGGG  94

seq1  TCAAT-CATGTTCTAGTAAATGGCCACATACCCAAGAATAT-AATAGCTG  147
      ||||| |||| |||||||||||||||||||||| ||||||| ||||||||
seq2  TCAATCCATG-TCTAGTAAATGGCCACATACCC-AGAATATAAATAGCTG  142

seq1  -CACAAACT-GTACTTAATGGGGCTTTTTAAAGGAAGACACAGAGTTGGG  195
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAACTGGTACTTAATGGGGCTTTTTAAAGGAAGACACAGAGTTGGG  192

seq1  TGGGCAGGGGAA-GGAAGGCAGATCTAGGAGAAGCTATGAAAGTAGATCA  244
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGGGAAGGGAAGGCAGATCTAGGAGAAGCTATGAAAGTAGATCA  242

seq1  AAAGGTATTGGATGAAATCTTCAAAGAACTAACTTTACCTTTTAATGTGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAGGTATTGGATGAAATCTTCAAAGAACTAACTTTACCTTTTAATGTG-  291

seq1  TCTTAATTGAAACAGAGGTATACTGCTC-AAAGAACTAATTTTTTAATGA  343
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTTAATTGAAACAGAGGTATACTGCTCAAAAGAACTAATTTTTTAATGA  341

seq1  G-AAAAAATTGACAGACTTCTGATTAGGATGAACAAAATAAACGTCCAAT  392
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATTGACAGACTTCTGATTAGGATGAACAAAATAAACGTCCAAT  391

seq1  ATTGTAAACAAAGGGTCCGCTCTACAG-TTCTACCCATCGAAGGGTTCTG  441
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATTGTAAACAAAGGGTCCGCTCTACAGTTTCTACCCATCGAAGGGTTCTG  441

seq1  TCTTAGCATATTCAACCAACTAAGGATCAAAAGTGTTTCGGAAAAATATA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCATATTCAACCAACTAAGGATCAAAAGTGTTTCGGAAAAATATA  491

seq1  TGTCTGTAATAAACATATGTAGCTTTTTCTTGGTGTTGCCCTCTAAGTCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTAATAAACATATGTAGCTTTTTCTTGGTGTTGCCCTCTAAGTCA  541

seq1  TATGGGACAACTATTTACATAGGAGTTCCATTGTATCCACTATGACAAAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGACAACTATTTACATAGGAGTTCCATTGTATCCACTATGACAAAT  591

seq1  GATCGGGAGCTAATCTAAAATATACAGGCAGGTATGTATAGATTCTATAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGGGAGCTAATCTAAAATATACAGGCAGGTATGTATAGATTCTATAA  641

seq1  AAATAACTATGGTATTTTTACATAATGTGAGCATCCATAAATTTTGCTGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTATGGTATTTTTACATAATGTGAGCATCCATAAATTTTGCTGT  691

seq1  CAATGGGGGAGATTTAGTATCTCCCAGGGATACTAAAAAATGACAGTGTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGGGAGATTTAGTATCTCCCAGGGATACTAAAAAATGACAGTGTA  741

seq1  AGGAAGAAAAGTAGTATCAGGAAATATAAGTAGTTTAACAAAGAAGAAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAAGTAGTATCAGGAAATATAAGTAGTTTAACAAAGAAGAAAA  791

seq1  TAAGTAGAAAATGTACATAGTTTAACAAAATAACAGATTAAGTGAAATAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGAAAATGTACATAGTTTAACAAAATAACAGATTAAGTGAAATAA  841

seq1  CTGCCTATAAAAAATAAGACTTCCTGAAATTAACACAAAACCAAGTAGAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTATAAAAAATAAGACTTCCTGAAATTAACACAAAACCAAGTAGAA  891

seq1  ATTTTTAATATTTCAAATGTTTAAAATTGAATATATTGTCAAAGGCCTAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATATTTCAAATGTTTAAAATTGAATATATTGTCAAAGGCCTAT  941

seq1  ATACAAAGAAATCATCAAATCTATATTGTTTCACTGGTAAATTCTATCAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAGAAATCATCAAATCTATATTGTTTCACTGGTAAATTCTATCAG  991

seq1  ACATTTAAGGAAAATTACTGTTAATTTTATACACACTCTTTCAGAACTTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAAGGAAAATTACTGTTAATTTTATACACACTCTTTCAGAACTTC  1041

seq1  CCAGCTAATTATGCAATCAGCATAATACTGCTGCTGAAGCCTGACAGCCA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAATTATGCAATCAGCATAATACTGCTGCTGAAGCCTGACAGCCA  1091

seq1  CACTATGGGAGATAAAATTATATATTATCATGCCTCATGAACAGTATTAG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGGGAGATAAAATTATATATTATCATGCCTCATGAACAGTATTAG  1141

seq1  AAGATTGAATTC  1153
      ||||||||||||
seq2  AAGATTGAATTC  1153

seq1: chr14_30988946_30990001
seq2: B6Ng01-043D21.g_67_1092

seq1  GAATTCAGAGTTCAGGATCCATAAAGGAAATCCAGCCAAGACAGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTTCAGGATCCATAAAGGAAATCCAGCCAAGACAGAGCCAT  50

seq1  AAGCATCCAGTTACACTTCCTCCATGGCTGGCTCCAGGCTCAAGAGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCCAGTTACACTTCCTCCATGGCTGGCTCCAGGCTCAAGAGCAGA  100

seq1  ACTGATGGCTGGAATGGGGATCACATCCCTGCAAGGCCAAACACATTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGGCTGGAATGGGGATCACATCCCTGCAAGGCCAAACACATTTAC  150

seq1  TGTTAAGCTTCATTAAAAAGTTCACATATGCCTGCCTCCAATCAAGGACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGCTTCATTAAAAAGTTCACATATGCCTGCCTCCAATCAAGGACG  200

seq1  AGAGACACTTGCTGGAGGGCCCCGAGGATGCTCACAGCATCTTCATACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTTGCTGGAGGGCCCCGAGGATGCTCACAGCATCTTCATACAT  250

seq1  CCCTGTCTCCATCTCAAATCTCAGATCTATGAAGGGATAGAGACTAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCCATCTCAAATCTCAGATCTATGAAGGGATAGAGACTAGAGA  300

seq1  CTAGCGTAATGTTGAGGAATTACATGCACCCTCCATCATAATAGAGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGTAATGTTGAGGAATTACATGCACCCTCCATCATAATAGAGGTGT  350

seq1  TATGCAATTCATAGAGGATGTAATTCAAGTGCTAAATTATTAACTATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAATTCATAGAGGATGTAATTCAAGTGCTAAATTATTAACTATGTT  400

seq1  ATGGTCGTGGCAACAGTAGAGCATTTCATTATCATGGGTGACACTGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCGTGGCAACAGTAGAGCATTTCATTATCATGGGTGACACTGAAAC  450

seq1  ATTCTCAGAAAAGCACGTGGAAGCTGGTCTTTCTGAGTGCATGAAGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAGAAAAGCACGTGGAAGCTGGTCTTTCTGAGTGCATGAAGTTTT  500

seq1  CTCTTCTGTAGCCACACAGTCCTGAAATTGTCTCTGCACGACAACAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGTAGCCACACAGTCCTGAAATTGTCTCTGCACGACAACAGGAA  550

seq1  GATTATTGTGAGAAAATCAATGTGCAAAAATGTAAGATAAAGTAGGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTGTGAGAAAATCAATGTGCAAAAATGTAAGATAAAGTAGGGAAT  600

seq1  CGTCTATCCGTCAAGGATGTGGGATCAGAGTGCGGCAGTTCACCGTGACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTATCCGTCAAGGATGTGGGATCAGAGTGCGGCAGTTCACCGTGACG  650

seq1  ATAGGGAGAAGACAGAGCTGAGGAAGTCACAGAGTTCACTTGTTTTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAGAAGACAGAGCTGAGGAAGTCACAGAGTTCACTTGTTTTAAAA  700

seq1  CAAGAAAAAACTGCCCTACTGTTTGAGGGAGGGAAAAGCAGAGTTTGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAAACTGCCCTACTGTTTGAGGGAGGGAAAAGCAGAGTTTGGGC  750

seq1  TTTTGTGGACGATATGCTCTAG-TTATCAGCCATTCCGAGGGGGGACTGA  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTTGTGGACGATATGCTCTAGTTTATCAGCCATTCCGAGGGGGGACTGA  800

seq1  AATGGAGGCTCTGCTCGGCTCAGGAGCTGTGACTTAGGAGACACAAGTGA  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATGGAGGCTCTGCTCGGCTCA-GAGCTGTGACTTAGGAGACACAAGTGA  849

seq1  AATGGACACTCCACCCAAGCTGGGAGCTGCATGCCTGATGATACCCATCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACACTCCACCCAAGCTGGGAGCTGCATGCCTGATGATACCCATCC  899

seq1  -TTCTCCAGGAGAAGGGATTGTTTGT-GGCTATAA-TTAACATTAGTGTC  946
       ||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  TTTCTCCAGGAGAAGGGATTGTTTGTGGGCTATAATTTAACATTAGTGTC  949

seq1  CACAGATGCG-CGTGCGTGCATACACACACCCCACACACAC--ACCACAC  993
      |||||||||| ||||||||||||||||||||||||||||||  || ||||
seq2  CACAGATGCGTCGTGCGTGCATACACACACCCCACACACACATACAACAC  999

seq1  ATACCACAC--ACACACACCACACACACATCCACACACACCACACATATC  1041
      | |||||||  ||||||| ||||||||                       
seq2  ACACCACACATACACACATCACACACA-----------------------  1026

seq1  ACAACACCACACACA  1056
                     
seq2  ---------------  1026