BAC Information

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BAC

Clone NameB6Ng01-044N04
Chromosome14 (Build37)
Map Location 21,323,635 - 21,461,259
singlet/doubletdoublet
Overlap genePpp3cb, Usp54
Upstream gene1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17
Downstream geneMyoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk, Myst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044N04.bB6Ng01-044N04.g
ACCDH870466DH870467
length1,0951,140
definitionDH870466|Mus musculus domesticus DNA, BAC clone: B6Ng01-044N04, 5' end.DH870467|Mus musculus domesticus DNA, BAC clone: B6Ng01-044N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,323,635 - 21,324,748)(21,459,887 - 21,461,259)
sequence
gaattcaagttcgattcccagcaaccacttgacatccaacaatcatcttt
aatgccagtcccaggggatctgacaccctcttaatttggaggacaccatt
catgcgcatgtacaaatatacaggccaaacacccatatgaataaaataat
aaaataaaaattcaaaaaatgtaaaggatacatgttcatttattttgggg
tttaagccacaaaaaatatttgacaaaggggaataagatttaaaaatgca
aagaataaatagtacttgcttgacaatattaccctttcttcacccaaagt
gtgcacactcatgttataagaatgccacattctttttgctttgctttttc
tacaataaaggtaattacaatacttatttctgaaacatctttttaagaaa
cagtatgatttagacattatttcatctaaaatggttatgaatggaagagc
cttataaactaaatttaaaaaaatattgatagtcttaaccagaatgtaag
tgacttggggatgcaagaggtaggatgaatattgaataaagatttaattt
tccttaactgttaaaccaaatttctactcagacatacatattatatgccc
accatggaactcaaccttgaaaaaaacccaaaaaacaaaaaacaaaccct
agcattctgtacctggaaagaactatacaaaatgtgcccagacagaaaac
agggtcaaatgatcatttaactgggcagggtggcagcacctatgatccca
gcactcaggctggtggagctctgagttccaggccagccaaggttacatag
agaccttgtctcaaatgaacaatcagaaaatacataaattagaatgaaaa
aagaccatctatacttcttagtcctcaaacattatcagccccttcagaat
ttgaacatttttcttcataaagtgtaatgaagaaaaatgtccctcaaaat
atgatttaagagtttgtgatactagaagtgatatatatgagcattctgca
cttgtatacagtataatagactaaaatgatctcattagagatactatcta
gtattacatcaaatttatctcctgataaactttctagcctctgaa
gaattcactatgtagatctgggtggccttgcaagagatctacttctctct
gcctaccaagttctgggactaaaggcatgagccaccacacctggcctgat
ttgaaactgatgcggttaaaaataccagtgaaatcaattttgttaataat
gtagcaagtggaacatttaagttgtacactgtagttagccatatatgttt
ttacttgacagaactgaatgcacctcacgaaaatttctcaagggcttcga
gaggtaaacattcttcccaattctattgtcctgctcatcccttgtgtttc
attcctccttgttgaccaggattcggtaaatccttctgcttcattgccat
agagcagagacacccctggaagtccagattctgaggatgtaagcagaggc
ccgcgaccagcaagtgcaaatcctactcctgtgagattccagttgcatgc
cacagctaaacaccttaggtctgtcttttttcgctctcttttttcctctc
tctctctctttctttctttcttgtttgtgcgtgggcctgtgacttatttc
ctattttggtctcgaaaattgatggggcggggcacccgggataaactttt
ccgaggaagcaaagtaagtttggcagacggtagaacggatgaaaaaattc
ctgaaggtaacctggaggtgaggaggtcaatttcgggcctacccactcca
tctccagcaattcgacacgaggggaaaatgtcagggaaacggaacctgag
gtaagcggttctcggtgcgaggaggaaggagcgagcgcacagcccaagtt
tagttcagcagagagtctgccataataactgtccccggcgggagcagacc
accggctggccggcgttcttcgactccatcagaacagttggccttcgccc
gggtctttcccggctcaccctgagccgcgccgcgcgccgccgccatctta
cacacgattatcgcgatacgtcctcagccgtcagtcgccaggctcatttt
cagcgagttccttttcaacggttctcgtcgcgccgagggaggtatcgcga
gagttggttggctttggctcctgatagcataacagccccgggcgtgagga
tgcaacggcgggagcggtgagtgcaaccttccaggggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_21323635_21324748
seq2: B6Ng01-044N04.b_43_1137

seq1  GAATTCAAGTTCGATTCCCAGCAACCACTTGACATCCAACAATCATCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTCGATTCCCAGCAACCACTTGACATCCAACAATCATCTTT  50

seq1  AATGCCAGTCCCAGGGGATCTGACACCCTCTTAATTTGGAGGACACCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGTCCCAGGGGATCTGACACCCTCTTAATTTGGAGGACACCATT  100

seq1  CATGCGCATGTACAAATATACAGGCCAAACACCCATATGAATAAAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGCATGTACAAATATACAGGCCAAACACCCATATGAATAAAATAAT  150

seq1  AAAATAAAAATTCAAAAAATGTAAAGGATACATGTTCATTTATTTTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAATTCAAAAAATGTAAAGGATACATGTTCATTTATTTTGGGG  200

seq1  TTTAAGCCACAAAAAATATTTGACAAAGGGGAATAAGATTTAAAAATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCCACAAAAAATATTTGACAAAGGGGAATAAGATTTAAAAATGCA  250

seq1  AAGAATAAATAGTACTTGCTTGACAATATTACCCTTTCTTCACCCAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAATAGTACTTGCTTGACAATATTACCCTTTCTTCACCCAAAGT  300

seq1  GTGCACACTCATGTTATAAGAATGCCACATTCTTTTTGCTTTGCTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACTCATGTTATAAGAATGCCACATTCTTTTTGCTTTGCTTTTTC  350

seq1  TACAATAAAGGTAATTACAATACTTATTTCTGAAACATCTTTTTAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAAAGGTAATTACAATACTTATTTCTGAAACATCTTTTTAAGAAA  400

seq1  CAGTATGATTTAGACATTATTTCATCTAAAATGGTTATGAATGGAAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGATTTAGACATTATTTCATCTAAAATGGTTATGAATGGAAGAGC  450

seq1  CTTATAAACTAAATTTAAAAAAATATTGATAGTCTTAACCAGAATGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAACTAAATTTAAAAAAATATTGATAGTCTTAACCAGAATGTAAG  500

seq1  TGACTTGGGGATGCAAGAGGTAGGATGAATATTGAATAAAGATTTAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGGGGATGCAAGAGGTAGGATGAATATTGAATAAAGATTTAATTT  550

seq1  TCCTTAACTGTTAAACCAAATTTCTACTCAGACATACATATTATATGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAACTGTTAAACCAAATTTCTACTCAGACATACATATTATATGCCC  600

seq1  ACCATGGAACTCAACCTTGAAAAAAACCCAAAAAACAAAAAACAAACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGAACTCAACCTTGAAAAAAACCCAAAAAACAAAAAACAAACCCT  650

seq1  AGCATTCTGTACCTGGAAAGAACTATACAAAATGTGCCCAGACAGAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTGTACCTGGAAAGAACTATACAAAATGTGCCCAGACAGAAAAC  700

seq1  AGGGTCAAATGATCATTTAACTGGGCAGGGTGGCAGCACCTATGATCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCAAATGATCATTTAACTGGGCAGGGTGGCAGCACCTATGATCCCA  750

seq1  GCACTCAGGCTGGTGGAGCTCTGAGTTCCAGGCCAGCCAAGGTTACATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAGGCTGGTGGAGCTCTGAGTTCCAGGCCAGCCAAGGTTACATAG  800

seq1  AGACCTTGTCTCAAATGAACAATCAGAAAATACATAAATTAGAATGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTGTCTCAAATGAACAATCAGAAAATACATAAATTAGAATGAAAA  850

seq1  AAGACCATCTATACTTCTTAGTCCTCAAACATTATCAGCCCCTTCAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCATCTATACTTCTTAGTCCTCAAACATTATCAGCCCCTTCAGAAT  900

seq1  TTGAACATTTTTCTTCATAAAGTGTAATGAAGAAAAAATGTCCCTCAAAA  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGAACATTTTTCTTCATAAAGTGTAATGAAG-AAAAATGTCCCTCAAAA  949

seq1  TATGATTTAAGAGTTTGTGATACTAGAAGTGATTATATATGAAGCATTCT  1000
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  TATGATTTAAGAGTTTGTGATACTAGAAGTGA-TATATATG-AGCATTCT  997

seq1  GCAACTTGTATACAGTAATAAATTAAGACTAAAAATGATCTCATTAAGAG  1050
      || ||||||||||||| ||||    ||||| |||||||||||||| ||||
seq2  GC-ACTTGTATACAGT-ATAA---TAGACT-AAAATGATCTCATT-AGAG  1040

seq1  AATTACTATCTAGTTAATTACATCAAAAATTTTAATTCTACTGATAAACT  1100
      |  |||||||||||  |||||||||||   ||||  ||| ||||||||||
seq2  A--TACTATCTAGT--ATTACATCAAA---TTTA--TCTCCTGATAAACT  1081

seq1  TTCTAAGCTCTGAA  1114
      |||||  |||||||
seq2  TTCTAGCCTCTGAA  1095

seq1: chr14_21459887_21461259
seq2: B6Ng01-044N04.g_66_1205 (reverse)

seq1  GCCCCCCTGGAGCCCAATGCTACCCGAGTCTCCCTGCCCCCTGTCCCCGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACCTCCGAGCAGCGCCAACCCTCCCCTGCTGCCCCAGCTCAGAAAGACGC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCGGTCCCGCTGCGTACGGAACGCGAGTGCCTCCTAACGCGTCACCCCGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGTGCAGGTCCCCCGAGACCCGACCTTCCGCACCCCCTCCCCCTGCGCTA  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCCCTGCACCCCGTTTCCGCCGGCCCCGCCCCCCTGAGAGTGTCGCACTC  250
                                 ||||||||| ||  || ||||||
seq2  ---------------------------GCCCCCCTG-GAAGGTTGCACTC  22

seq1  ACCGCTCCCGCCGTCGCATCCTCAACCGCCGCGGCTGCTATAGCTACAGG  300
      |||||||||||||| |||||||| ||  ||| ||||| ||| ||||   |
seq2  ACCGCTCCCGCCGTTGCATCCTC-ACGCCCGGGGCTGTTAT-GCTATCAG  70

seq1  GAGCC-AAGGCAACCAACTCTCGCGATACCTCCCTCGGCGCCGACGAGAA  349
      ||||| ||| |||||||||||||||||||||||||||||| |||||||||
seq2  GAGCCAAAGCCAACCAACTCTCGCGATACCTCCCTCGGCG-CGACGAGAA  119

seq1  CCGTGGAAAAGAGACTCGCTGGAAAATGAGCCTGGCGACTGACGGCTGAG  399
      |||| ||||||  ||||||| |||||||||||||||||||||||||||||
seq2  CCGTTGAAAAGGAACTCGCT-GAAAATGAGCCTGGCGACTGACGGCTGAG  168

seq1  GACGTATCGCGATAATCGTGTGTAAGATGGCGGCGGCGGCGGCGGCGCGG  449
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  GACGTATCGCGATAATCGTGTGTAAGATGGCGGCGGCG--CGCGGCGCGG  216

seq1  CTCAGGGTGAGCCGGGAAAGACCCGGGCGAAGGCCAACTGTTCTGATGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGTGAGCCGGGAAAGACCCGGGCGAAGGCCAACTGTTCTGATGGA  266

seq1  GTCGAAGAACGCCGGCCAGCCGGTGGTCTGCTCCCGCCGGGGACAGTTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAAGAACGCCGGCCAGCCGGTGGTCTGCTCCCGCCGGGGACAGTTAT  316

seq1  TATGGCAGACTCTCTGCTGAACTAAACTTGGGCTGTGCGCTCGCTCCTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAGACTCTCTGCTGAACTAAACTTGGGCTGTGCGCTCGCTCCTTC  366

seq1  CTCCTCGCACCGAGAACCGCTTACCTCAGGTTCCGTTTCCCTGACATTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCGCACCGAGAACCGCTTACCTCAGGTTCCGTTTCCCTGACATTTT  416

seq1  CCCCTCGTGTCGAATTGCTGGAGATGGAGTGGGTAGGCCCGAAATTGACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCGTGTCGAATTGCTGGAGATGGAGTGGGTAGGCCCGAAATTGACC  466

seq1  TCCTCACCTCCAGGTTACCTTCAGGAATTTTTTCATCCGTTCTACCGTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCTCCAGGTTACCTTCAGGAATTTTTTCATCCGTTCTACCGTCT  516

seq1  GCCAAACTTACTTTGCTTCCTCGGAAAAGTTTATCCCGGGTGCCCCGCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACTTACTTTGCTTCCTCGGAAAAGTTTATCCCGGGTGCCCCGCCC  566

seq1  CATCAATTTTCGAGACCAAAATAGGAAATAAGTCACAGGCCCACGCACAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATTTTCGAGACCAAAATAGGAAATAAGTCACAGGCCCACGCACAA  616

seq1  ACAAGAAAGAAAGAAAGAGAGAGAGAGAGGAAAAAAGAGAGCGAAAAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAGAAAGAAAGAGAGAGAGAGAGGAAAAAAGAGAGCGAAAAAAG  666

seq1  ACAGACCTAAGGTGTTTAGCTGTGGCATGCAACTGGAATCTCACAGGAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCTAAGGTGTTTAGCTGTGGCATGCAACTGGAATCTCACAGGAGT  716

seq1  AGGATTTGCACTTGCTGGTCGCGGGCCTCTGCTTACATCCTCAGAATCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTGCACTTGCTGGTCGCGGGCCTCTGCTTACATCCTCAGAATCTG  766

seq1  GACTTCCAGGGGTGTCTCTGCTCTATGGCAATGAAGCAGAAGGATTTACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCAGGGGTGTCTCTGCTCTATGGCAATGAAGCAGAAGGATTTACC  816

seq1  GAATCCTGGTCAACAAGGAGGAATGAAACACAAGGGATGAGCAGGACAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTGGTCAACAAGGAGGAATGAAACACAAGGGATGAGCAGGACAAT  866

seq1  AGAATTGGGAAGAATGTTTACCTCTCGAAGCCCTTGAGAAATTTTCGTGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGGGAAGAATGTTTACCTCTCGAAGCCCTTGAGAAATTTTCGTGA  916

seq1  GGTGCATTCAGTTCTGTCAAGTAAAAACATATATGGCTAACTACAGTGTA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATTCAGTTCTGTCAAGTAAAAACATATATGGCTAACTACAGTGTA  966

seq1  CAACTTAAATGTTCCACTTGCTACATTATTAACAAAATTGATTTCACTGG  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTAAATGTTCCACTTGCTACATTATTAACAAAATTGATTTCACTGG  1016

seq1  TATTTTTAACCGCATCAGTTTCAAATCAGGCCAGGTGTGGTGGCTCATGC  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAACCGCATCAGTTTCAAATCAGGCCAGGTGTGGTGGCTCATGC  1066

seq1  CTTTAGTCCCAGAACTTGGTAGGCAGAGAGAAGTAGATCTCTTGCAAGGC  1349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTCCCAGAACTTGGTAGGCAGAGAGAAGTAGATCTCTTGCAAGGC  1116

seq1  CACCCAGATCTACATAGTGAATTC  1373
      ||||||||||||||||||||||||
seq2  CACCCAGATCTACATAGTGAATTC  1140