BAC Information

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BAC

Clone NameB6Ng01-046C15
Chromosome14 (Build37)
Map Location 44,196,564 - 44,197,591
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342
Downstream geneLOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046C15.bB6Ng01-046C15.g
ACCDH871408DH871409
length1,0091,130
definitionDH871408|Mus musculus domesticus DNA, BAC clone: B6Ng01-046C15, 5' end.DH871409|Mus musculus domesticus DNA, BAC clone: B6Ng01-046C15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatgaaatgcattgtttgcatttgcgacaatgttgcaatgtgca
cataatagatgctataacagcctatgtaataatacatggcagtacataat
attatacaaaagtttgaggcctgagttcagagtcctatcacccctatcta
aagcttctcatggagtcatgcacctgtaataatagcagtgggcgacacct
aggcaaatccctgagtacactggggagtgtagccaattgctgaggtccct
gatcagtgagagacctattcttgaaaattacaatgttaacgtatttgagg
ctgattcccagttgcgacctctgacctcaacttgtatgcacaaccccaaa
ccccctaaaagaacattgtcttgaagcactactgactaatgtattgatgt
catcccttgtaaacttagtatgcttcatcatgtcttcagcttctactctg
ttcaaacaactttctgacagttcattgcttggtgtcttctctctaaaagt
gggtttctgtagagtaaattgaattattttattgtgttttttttatcatc
ttcttacactccaggttttattcccctccaggtctactatctaactcttc
cccaccccatacctctatccagaccccatctctacctggatgttcccacg
atatccacaactgtcaccacactagccctaccctctcttgggcttccagt
cttttaagggttaggtgcatcttctctgactgaactttgacctcgtagtc
ctttgctgtaaatgtgtttgaagcctcataaatgctgatgaatgctgcct
ggtggtggtacagggtctgagaggtctctgggatctaagttaattgtgtc
tgctggtctgctacaggtcaccctgcccctcagcatacatgtctttgggt
cgagtacatcactcagtatgatagttgtagtccacccatgtacatgcaat
ctcagatgtcctgtgctagtagctagtagtttccactgtgtaatgaccta
ttctatatc
gaattcctgatcttccctagacttttatcataaatagatgttgaattttg
tcacatgctttctcagcatataatgaagtgatcatgtagtgtttttcttt
gagatttttttaggtagtagattatgcagatggatttctgtatatggaac
catccctgcatctatgggatgaagtccacttgataatgatgaatgatctt
catgatttgttcttggatttggtttttgagacgtgaaatgcataattttg
cactggtatctataagtgaaatacagaatttctttcctggttgggtcttt
gtgtggctttggtatcagtgtaactgtggctccatagaacacattgggta
ttattccttttgtttctgttctgtggaatggtttgaagggaattagtatt
aggtcttctttgaaggtttgaaagaattctgcactaaacccatctggtcc
cgagcttttgttggtttggagattttacccattgcttctatttctttagg
ggttatgggacagttcacatggtttatctgatcctgatttaattttgctt
ccgggtatctgttaagataattgtccatttcatacagattttccagtttt
gttgactacagctttgtagtagggattttgatgattttttttattacctt
tggttttttgtcattatgtctcctttttcatttctgatttttgttaattt
tggatactgtctctgtgccaatcaggttacttctgggaaaagggattctt
ttatcttgtttgatttttgtcaaagaatcagctccttgtttttgatcatt
gtaataggttttttgtttcttttgtttgttttcggtggggttgattttca
gccctcgagtttgattatttcctgccatctactccttcttgggtatattt
gcttctttttgctctagaattttcagatgttctgtcaaggttgctagtgt
atactcttctcagttttaatttagaggactccgagctatgagtttccacc
taacatgggtttttatggtgccatagttgggtgggttggacctcgtgtct
cctaaatccaaaaagcttatatttcttcttcattccctctcgcgcatatt
tatttaggaaacatgttactctcttgttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44196564_44197591
seq2: B6Ng01-046C15.b_41_1049

seq1  GAATTCTATGAAATGCATTGTTTGCATTTGCGACAATGTTGCAATGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAAATGCATTGTTTGCATTTGCGACAATGTTGCAATGTGCA  50

seq1  CATAATAGATGCTATAACAGCCTATGTAATAATACATGGCAGTACATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAGATGCTATAACAGCCTATGTAATAATACATGGCAGTACATAAT  100

seq1  ATTATACAAAAGTTTGAGGCCTGAGTTCAGAGTCCTATCACCCCTATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACAAAAGTTTGAGGCCTGAGTTCAGAGTCCTATCACCCCTATCTA  150

seq1  AAGCTTCTCATGGAGTCATGCACCTGTAATAATAGCAGTGGGCGACACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCTCATGGAGTCATGCACCTGTAATAATAGCAGTGGGCGACACCT  200

seq1  AGGCAAATCCCTGAGTACACTGGGGAGTGTAGCCAATTGCTGAGGTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAATCCCTGAGTACACTGGGGAGTGTAGCCAATTGCTGAGGTCCCT  250

seq1  GATCAGTGAGAGACCTATTCTTGAAAATTACAATGTTAACGTATTTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTGAGAGACCTATTCTTGAAAATTACAATGTTAACGTATTTGAGG  300

seq1  CTGATTCCCAGTTGCGACCTCTGACCTCAACTTGTATGCACAACCCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCCCAGTTGCGACCTCTGACCTCAACTTGTATGCACAACCCCAAA  350

seq1  CCCCCTAAAAGAACATTGTCTTGAAGCACTACTGACTAATGTATTGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTAAAAGAACATTGTCTTGAAGCACTACTGACTAATGTATTGATGT  400

seq1  CATCCCTTGTAAACTTAGTATGCTTCATCATGTCTTCAGCTTCTACTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTTGTAAACTTAGTATGCTTCATCATGTCTTCAGCTTCTACTCTG  450

seq1  TTCAAACAACTTTCTGACAGTTCATTGCTTGGTGTCTTCTCTCTAAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACAACTTTCTGACAGTTCATTGCTTGGTGTCTTCTCTCTAAAAGT  500

seq1  GGGTTTCTGTAGAGTAAATTGAATTATTTTATTGTGTTTTTTTTATCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTGTAGAGTAAATTGAATTATTTTATTGTGTTTTTTTTATCATC  550

seq1  TTCTTACACTCCAGGTTTTATTCCCCTCCAGGTCTACTATCTAACTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACACTCCAGGTTTTATTCCCCTCCAGGTCTACTATCTAACTCTTC  600

seq1  CCCACCCCATACCTCTATCCAGACCCCATCTCTACCTGGATGTTCCCACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCATACCTCTATCCAGACCCCATCTCTACCTGGATGTTCCCACG  650

seq1  ATATCCACAACTGTCACCACACTAGCCCTACCCTCTCTTGGGCTTCCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCACAACTGTCACCACACTAGCCCTACCCTCTCTTGGGCTTCCAGT  700

seq1  CTTTTAAGGGTTAGGTGCATCTTCTCTGACTGAACTTTGACCTCGTAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGGGTTAGGTGCATCTTCTCTGACTGAACTTTGACCTCGTAGTC  750

seq1  CTTTGCTGTATATGTGTTTGAAGCCTCATAAATGCTGATGAATGCTGCCT  800
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGTAAATGTGTTTGAAGCCTCATAAATGCTGATGAATGCTGCCT  800

seq1  GGTTGGTGGTACAGGGTCTGAGAGGTCTCTGGGATCTAAGTTAATTGTGT  850
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-TGGTGGTACAGGGTCTGAGAGGTCTCTGGGATCTAAGTTAATTGTGT  849

seq1  CTGCTGGTCCTGCTACAGGGTCACCCTGCCCCTCAGCATACATGTCTTTT  900
      |||||||| |||||||| |||||||||||||||||||||||||||| |||
seq2  CTGCTGGT-CTGCTACA-GGTCACCCTGCCCCTCAGCATACATGTC-TTT  896

seq1  GGGTCCGAGTTACATCACTCAGTATGATAGTTTGTAGTTCCACCCATGTA  950
      |||| |||| |||||||||||||||||||| |||||| ||||||||||||
seq2  GGGT-CGAG-TACATCACTCAGTATGATAG-TTGTAG-TCCACCCATGTA  942

seq1  CATGCAAATCTCAGGATGTCCTTGTGCTTAGTAGCTTAGTAGTATTCCAC  1000
      ||||| ||||||| ||||||| ||||| ||||||| ||||||| ||||||
seq2  CATGC-AATCTCA-GATGTCC-TGTGC-TAGTAGC-TAGTAGT-TTCCAC  986

seq1  TGTGTAAATGAACCATATTTTCTATATC  1028
      ||||| ||||| |    | |||||||||
seq2  TGTGT-AATGACC----TATTCTATATC  1009