BAC Information

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BAC

Clone NameB6Ng01-046D02
Chromosome14 (Build37)
Map Location 42,878,875 - 42,879,647
singlet/doubletsinglet
Overlap geneLOC666233
Upstream geneDydc2, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032
Downstream geneEG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046D02.bB6Ng01-046D02.g
ACCDH871428DH871429
length883772
definitionDH871428|Mus musculus domesticus DNA, BAC clone: B6Ng01-046D02, 5' end.DH871429|Mus musculus domesticus DNA, BAC clone: B6Ng01-046D02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatagccaaaccttgtcaataaacagtgaatgatttatgaataga
tgggaaacttcatggtgcatgcagacttcagagttctggtctccggaagt
aaagaatttttcttgaatggaaacactacaaaactcagtagagttcagga
aaaggtggatgggcctcattcttactttgggcctattgtacacaaataca
gggagggattcatgcctatactatttgattggaatgcctgctgcattgtt
ttccaggctcagagagaatcagctacccaaactataactaatacttattc
attacccgttttctccagttctccataaaggttattcatctgactacctg
agagacagagtgggcttctgactaccccaccatcccccaagacaacttgg
accaatgtcatagtgatattgcatagctcaagatggtagacaaagacaac
acaatcaatttggaaaggctttatttacatgatttttccactattttact
ggagagtttaggtagcatttttgcatgcattcatcacacccaggtcaaga
aggcagaaggaacagatgtcaatgccagagcccctcctgaaattatggat
ccattaaaattgaggtttcactggacccgaggcctgttcatcctctatcc
atccaattgagtcttaggtatcttatgaatacaggatcatattccaatct
ccaacagactcaggcctagaactgggaactcaaataatgtagaaactgga
gaagttgagagctaaatggactacgaagaagcaatccaattgtccctgtt
ggcctttgtcacagatgcctatttttgtctgggtgttttggaagaaagaa
gattgtgtgattttgcttttgtaagaaggattt
gaattcacatgatccttgaggcctgtgtcatggagtagcttcagtgactg
gaagaatgtgttagatttatttcctatactcaaagcaggcagaaaaggat
gaaagtcctccatgtaatatcaaatatatccagaagagggtgctagatcc
tcaatactcaaagtatccagaagatgggataagacagattgccatccagt
accaaagacatccagagagcatcttaagatcaaagtcggcttgtggagta
gccctaggagcaaggaggaggaatctacctcctgatgccctcttctgaca
gtcagaatgaaattgaggaggccttgcagagcagctgcagccttgacaat
tcctgctctctgtcacacaaatgcttcccagaagctccaagctcctgatt
cccattactggaagtccaagctcaagcccaccttctgtaggaagctccct
ctttcatgcccaggattcacagtgacttcccctggtccaataattcttgc
tatttaacactaagactgaaggccatcttgtggctgcctctttctggtct
ctgtatgttcattgttctctcctccaagaggcctgctcagttttgtcagc
atgactaagggtgaaccataaaggtagttaatgaatgctccaagagcagt
tggagtcaccacattagtgacatcacagaaaatgccagggctctccagga
tacaacacaacatctagggaagggacttctgatgtcacacaggcagctct
accttcctgctcagtacctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_42878875_42879647
seq2: B6Ng01-046D02.g_68_838

seq1  GAATTCACATGATCCTTGAGGCCTGTGTCATGGAGTAGCTTCAGTGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGATCCTTGAGGCCTGTGTCATGGAGTAGCTTCAGTGACTG  50

seq1  GAAGAATGTGTTAGATTTATTTCCTATACTCAAAGCAGGCAGAAAAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGTGTTAGATTTATTTCCTATACTCAAAGCAGGCAGAAAAGGAT  100

seq1  GAAAGTCCTCCATGTAATATCAAATATATCCAGAAGAGGGTGCTAGATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCTCCATGTAATATCAAATATATCCAGAAGAGGGTGCTAGATCC  150

seq1  TCAATACTCAAAGTATCCAGAAGATGGGATAAGACAGATTGCCATCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACTCAAAGTATCCAGAAGATGGGATAAGACAGATTGCCATCCAGT  200

seq1  ACCAAAGACATCCAGAGAGCATCTTAAGATCAAAGTCGGCTTGTGGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGACATCCAGAGAGCATCTTAAGATCAAAGTCGGCTTGTGGAGTA  250

seq1  GCCCTAGGAGCAAGGAGGAGGAATCTACCTCCTGATGCCCTCTTCTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGGAGCAAGGAGGAGGAATCTACCTCCTGATGCCCTCTTCTGACA  300

seq1  GTCAGAATGAAATTGAGGAGGCCTTGCAGAGCAGCTGCAGCCTTGACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAATGAAATTGAGGAGGCCTTGCAGAGCAGCTGCAGCCTTGACAAT  350

seq1  TCCTGCTCTCTGTCACACAAATGCTTCCCAGAAGCTCCAAGCTCCTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCTCTGTCACACAAATGCTTCCCAGAAGCTCCAAGCTCCTGATT  400

seq1  CCCATTACTGGAAGTCCAAGCTCAAGCCCACCTTCTGTAGGAAGCTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTACTGGAAGTCCAAGCTCAAGCCCACCTTCTGTAGGAAGCTCCCT  450

seq1  CTTTCATGCCCAGGATTCACAGTGACTTCCCCTGGTCCAATAATTCTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGCCCAGGATTCACAGTGACTTCCCCTGGTCCAATAATTCTTGC  500

seq1  TATTTAACACTAAGACTGAAGGCCATCTTGTGGCTGCCTCTTTCTGGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACACTAAGACTGAAGGCCATCTTGTGGCTGCCTCTTTCTGGTCT  550

seq1  CTGTATGTTCATTGTTCTCTCCTCCAAGAGGCCTGCTCAGTTTTGTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGTTCATTGTTCTCTCCTCCAAGAGGCCTGCTCAGTTTTGTCAGC  600

seq1  ATGACTAAGGGTGAACCATAAAGGTAGTTAATGAATGCTCCAAGAGCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAAGGGTGAACCATAAAGGTAGTTAATGAATGCTCCAAGAGCAGT  650

seq1  TGGAGTCACCACATTAGTAACATCACAGAAAATGCCAGGGCTCTCCAGGA  700
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGGAGTCACCACATTAGTGACATCACAGAAAATGCCAGGGCTCTCCAGGA  700

seq1  TACAACACAACATCTAGGGAAGGGACTTCTGATGTCACACAGGTCAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TACAACACAACATCTAGGGAAGGGACTTCTGATGTCACACAGG-CAGCTC  749

seq1  TTACCTTCCTGCTCAGTACCTCA  773
       ||||||||||||||||||||||
seq2  -TACCTTCCTGCTCAGTACCTCA  771