BAC Information

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BAC

Clone NameB6Ng01-046D04
Chromosome14 (Build37)
Map Location 84,651,287 - 84,652,411
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
Downstream genePcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046D04.bB6Ng01-046D04.g
ACCDH871432DH871433
length1,1311,088
definitionDH871432|Mus musculus domesticus DNA, BAC clone: B6Ng01-046D04, 5' end.DH871433|Mus musculus domesticus DNA, BAC clone: B6Ng01-046D04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgacgtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaaggagttacagagacggagtttggagctgagatg
aaaggatggaccatgtagagactgccatagccagggatccaccccataat
cagcatccaaacgctgacaccattgcatacactagcagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccgggcctagcaaaca
cagaagtgatgctcacagtcagctaatgatgatcatagggctccatgaga
gctagagaagtagccagagctaaggatctgcacctatagtggaacaaatt
atgagctacagtaccggagctcttgactctagctgcattatattcaaaga
tgctagtcgcatcactgaagagccatgactgcacttatgcccagtcggca
atcagcaaggatggtgcatgggagtggggtg
gaattcatatttcatgagctatataatttatctaaataatttagataagt
aatgcaagcaatcttcatttccttagacaaacagaataaacaaatgcttg
aaataaatagcttgctgttcttagagcctgactgctatatacctcaaata
gcttcttacaaacaacatttatatattccaagtgcattaggtaaaaaatg
catgttctattacaaataaggaattcatacttaataaatcccactatata
gatttttttctatttcccgcaaaaatgaaacacaatatttgaaaatcagt
tcttcttctaagatacaaacacttactgcacttaatttgcataaaaataa
gttcaataaatccatttcatgaataagagatagaaagcataaacatgtat
aggtgaaaaatataaaatgtataaaccttgttctgatacagttgcccgtc
tttcttattccagcactggtgaggcaaagcagatggatctttgtcagttt
gaggcaagcctggtcacatagcaagttctgaccaatcaggattacttagt
gaaatattgtcttaaaaaacatcaatctcattactgtaaatgaaaacttc
ttaagaaaagtatttccacttaacccagaataaaatactaagacaagagt
ctagtaggatttattttaaaaaaattgacagttcattttaaaatataaat
gagagtttatttaaactgaaaacaattttctgtaagttatttactatgtt
ctacattttcagacatcattttatgtattcttgaatactaaagatataga
aactcacagtaattacacttatttcaaatgcaatgttgttatccaaagcc
agtatgacacatcgtgatacaaacttcaaagtttcatcaaactcgtttta
gtttagtcacatactatggaaagcatatatttgatatttgcataatttgt
agataatatttgtaaaaaatgatataatatttgacagataaattgtgcct
ctatattaaatcagtcttatctgtaaatcatttatatcatgttagaatat
acgaagatgacttattagcttatatcaagacagctgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84651287_84652411
seq2: B6Ng01-046D04.g_64_1151

seq1  GAATTCATATTTCATGAGCTATATAATTTATCTAAATAATTTAGATAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTTCATGAGCTATATAATTTATCTAAATAATTTAGATAAGT  50

seq1  AATGCAAGCAATCTTCATTTCCTTAGACAAACAGAATAAACAAATGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGCAATCTTCATTTCCTTAGACAAACAGAATAAACAAATGCTTG  100

seq1  AAATAAATAGCTTGCTGTTCTTAGAGCCTGACTGCTATATACCTCAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAGCTTGCTGTTCTTAGAGCCTGACTGCTATATACCTCAAATA  150

seq1  GCTTCTTACAAACAACATTTATATATTCCAAGTGCATTAGGTAAAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTACAAACAACATTTATATATTCCAAGTGCATTAGGTAAAAAATG  200

seq1  CATGTTCTATTACAAATAAGGAATTCATACTTAATAAATCCCACTATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTATTACAAATAAGGAATTCATACTTAATAAATCCCACTATATA  250

seq1  GATTTTTTTCTATTTCCCGCAAAAATGAAACACAATATTTGAAAATCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTCTATTTCCCGCAAAAATGAAACACAATATTTGAAAATCAGT  300

seq1  TCTTCTTCTAAGATACAAACACTTACTGCACTTAATTTGCATAAAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTAAGATACAAACACTTACTGCACTTAATTTGCATAAAAATAA  350

seq1  GTTCAATAAATCCATTTCATGAATAAGAGATAGAAAGCATAAACATGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATAAATCCATTTCATGAATAAGAGATAGAAAGCATAAACATGTAT  400

seq1  AGGTGAAAAATATAAAATGTATAAACCTTGTTCTGATACAGTTGCCCGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAAAATATAAAATGTATAAACCTTGTTCTGATACAGTTGCCCGTC  450

seq1  TTTCTTATTCCAGCACTGGTGAGGCAAAGCAGATGGATCTTTGTCAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATTCCAGCACTGGTGAGGCAAAGCAGATGGATCTTTGTCAGTTT  500

seq1  GAGGCAAGCCTGGTCACATAGCAAGTTCTGACCAATCAGGATTACTTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGCCTGGTCACATAGCAAGTTCTGACCAATCAGGATTACTTAGT  550

seq1  GAAATATTGTCTTAAAAAACATCAATCTCATTACTGTAAATGAAAACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTGTCTTAAAAAACATCAATCTCATTACTGTAAATGAAAACTTC  600

seq1  TTAAGAAAAGTATTTCCACTTAACCCAGAATAAAATACTAAGACAAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAAGTATTTCCACTTAACCCAGAATAAAATACTAAGACAAGAGT  650

seq1  CTAGTAGGATTTATTTTAAAAAAATTGACAGTTCATTTTAAAATATAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAGGATTTATTTTAAAAAAATTGACAGTTCATTTTAAAATATAAAT  700

seq1  GAGAGTTTATTTAAACTGAAAACAATTTTCTGTAAGTTATTTACTATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTTATTTAAACTGAAAACAATTTTCTGTAAGTTATTTACTATGTT  750

seq1  CTACATTTTCAGACATCATTTTATGTATTCTTGAATACTAAAGATATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTTCAGACATCATTTTATGTATTCTTGAATACTAAAGATATAGA  800

seq1  AACTCAACAGTAATTACACTTATTTCCAAATGCAATGTTGTTATCCAAAG  850
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  AACTC-ACAGTAATTACACTTATTT-CAAATGCAATGTTGTTATCCAAAG  848

seq1  CCAGTAATGACACATCGTGATTACCAAACTTCAAAGGTTTCCAATCCAAA  900
      ||||| |||||||||||||||   ||||||||||| |||||  || ||||
seq2  CCAGT-ATGACACATCGTGAT--ACAAACTTCAAA-GTTTC--AT-CAAA  891

seq1  CTCGTTTTAAGGTTTAGGTCAACCAATACTTATGGAAAAGCATAATATTT  950
      |||||||||  ||||| ||||    |||| ||||| ||||||| ||||||
seq2  CTCGTTTTA--GTTTA-GTCA---CATAC-TATGG-AAAGCAT-ATATTT  932

seq1  GATATTTGCATAATTTTGTTAGATAATATTTGTATAAAATTGATATAATA  1000
      ||||||||||||||||   ||||||||||||||| |||| ||||||||||
seq2  GATATTTGCATAATTT--GTAGATAATATTTGTA-AAAAATGATATAATA  979

seq1  TTTGACAGATAAATATGTG-CTCTAATATTAAATCAGTCTTATCTGTAAC  1049
      |||||||||||||| |||| |||| |||||||||||||||||||||||| 
seq2  TTTGACAGATAAAT-TGTGCCTCT-ATATTAAATCAGTCTTATCTGTAA-  1026

seq1  ATCTAATTTATATTCCAATGTTAGAATTATACGAAAGGATGACTTAATTA  1099
      |||  ||||||||    ||||||||| ||||||||  |||||||| ||||
seq2  ATC--ATTTATAT---CATGTTAGAA-TATACGAA--GATGACTT-ATTA  1067

seq1  GCCTTAATTATCAAGGACAGCCTGAT  1125
      | ||||  |||||| ||||| |||||
seq2  G-CTTA--TATCAA-GACAG-CTGAT  1088