BAC Information

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BAC

Clone NameB6Ng01-046E15
Chromosome14 (Build37)18 (Build37)
Map Location 80,499,501 - 80,500,03027,982,028 - 27,983,082
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1300010F03Rik, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046E15.bB6Ng01-046E15.g
ACCDH871500DH871501
length9391,046
definitionDH871500|Mus musculus domesticus DNA, BAC clone: B6Ng01-046E15, 5' end.DH871501|Mus musculus domesticus DNA, BAC clone: B6Ng01-046E15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,499,501 - 80,500,030)(27,982,028 - 27,983,082)
sequence
gaattctcacctgagaaataccaaatggctgagaaacacctgaaaaaatg
ttcacaatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacaatcctccattgttggtg
ggattgcaagcttgtacgaccactctggaaatcagtctggtggttcctca
gaaaattggacatgttactactggaggattccgcaatacctctcttgggc
atatatccagaagatgttccaactagtaagaaagacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gtccctcagcagaggaatggatacaaaaaatgtggtacatttacacaatg
gagtagtactcagctattaaaaacaatgaatttatgaaattcctaggcaa
atggttggacctggagggcattatcttgagtgaggtaacccaatcacaaa
agaactcaaatgatatgtactcactgataagtggatattagtccagaaac
ttagaatacccacgatgtaagatacaatttgctaaacacatgaaactcaa
gaagaacgaagaccaaattgtggacactttgccccttcttaggattggga
acaaaacatccatggaaaggaattacagagacaaagtttggagatgagac
aaaaggttggaccatctagagactgccatatccagggatccatcccataa
tcagcctccaaacgcgcctccaaatgctgacaccattgcatacactaata
agattttcctgaaagaccccgatatagctgtctcttgtgagactagtcgg
gcctagcaaacacataagtggatgctcacagtcagctat
gaattccctattgcatgtgccatgtataacttccccttcatgagatattg
catgtgccacagataactttttccttcatgagacattgcatgtgtcacag
acaactatttccttcatgagacatcactctttagcttttcaaggactaag
aatctccatatccaggcatcctacagaatgtagagaaatcaaaggagaat
catgctgttgttttccaatgtgagataacccagtgaaggaagagtcatct
ctgcatattattcacagtctgttgactagagaaggcaattaagaaggaat
ttcatttatgaggagagatctaaccctgaggtatttttaaaagactacaa
tcccagcagttggttgaaggtagaagaatcaggacctcaaaaccatcatc
cctacataatgaattggcagctagcctgagataagatgacacaaatgaaa
gagaggaaagatgatataataatatatagttcatttatgaacacttaagt
atttgtccaccagaggcaatccatgtgtaatgtagtttttttctttttaa
ttctcctctttcttctatttctttttagttgtatctccctcaaaaccttc
atgttttgtattgtcatcaaaatgtatcatagaacttcatctacattgat
ggcaatgcaatccttgtatactgtttggtattccattaaagcttggctac
tcatttcattgtttttctttcacttagatttctccttttcaaacatgagc
ttacaagttcagttctttcccattttagaaaattccatcgtcagtgaaat
cgtttctcttgaatctactttacctattctaatatcctatcatgcttctt
gaatgagctccctatactttctgataaaataaagtacttcatttttcatc
tatgcttgctttattcactgaaattttggaagattacatgaaaatgctaa
gtttttctgcagttccccacaaacttgagcccaagaaatgtaattatgac
tcatctcctccgctgtgctactttctttcacatgctctggagcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80499501_80500030
seq2: B6Ng01-046E15.b_195_724 (reverse)

seq1  CAAAGTGTCCACACTTTGGTCTTCGTTCTTCTTGAGTTTCATATGTTTTG  50
      ||||||||||||| |||||||||||||||||||||||||||| ||||| |
seq2  CAAAGTGTCCACAATTTGGTCTTCGTTCTTCTTGAGTTTCATGTGTTTAG  50

seq1  CAAGTTGTAACTTATGTCTTGGTTATTCTAAGTTTCTGGGCTAATATCCA  100
      ||| ||||| ||||  || ||| |||||||||||||||| ||||||||||
seq2  CAAATTGTATCTTACATCGTGGGTATTCTAAGTTTCTGGACTAATATCCA  100

seq1  CTTATCAATGAGTACATATCATGTGAGTTCTTTTGTGATTGGGTTACCTC  150
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  CTTATCAGTGAGTACATATCATTTGAGTTCTTTTGTGATTGGGTTACCTC  150

seq1  ACTCAGGATGATACCCTCCAGATCCATCTATTTGCCTAGGAATTTCATAA  200
      ||||| ||| || |||||||| |||| | |||||||||||||||||||||
seq2  ACTCAAGATAATGCCCTCCAGGTCCAACCATTTGCCTAGGAATTTCATAA  200

seq1  ATTCATTCTTTTTAATAGCTGAGTATTACTCCATTGTGTAAATGTACCAC  250
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTCATTGTTTTTAATAGCTGAGTACTACTCCATTGTGTAAATGTACCAC  250

seq1  ATTTTTTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCT  300
      |||||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  ATTTTTTGTATCCATTCCTCTGCTGAGGGACATCTGGGTTCTTTCCAGCT  300

seq1  TCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||| || |
seq2  TCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCTT  350

seq1  TCTTATCGGTTGGAACATCTTCTGGATATATGCCCAGGAGAGGTATTGTG  400
      |||||   |||||||||||||||||||||||||||| ||||||||||| |
seq2  TCTTACTAGTTGGAACATCTTCTGGATATATGCCCAAGAGAGGTATTGCG  400

seq1  GGATCCTCTGGTAGTACTATGTCCAATTTTCTGAGGAACTGCCAGACTGA  450
      | ||||||  ||||||  |||||||||||||||||||||  |||||||||
seq2  GAATCCTCCAGTAGTAACATGTCCAATTTTCTGAGGAACCACCAGACTGA  450

seq1  TTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAATAATGGAGGAGTG  500
      ||||||||||||| ||||||||||||||||||||||| ||||||||| ||
seq2  TTTCCAGAGTGGTCGTACAAGCTTGCAATCCCACCAACAATGGAGGATTG  500

seq1  TTCCTCTTTCTCCACATCCTCACCAGCATC  530
      ||||||||||||||||||||  ||||||||
seq2  TTCCTCTTTCTCCACATCCTTGCCAGCATC  530

seq1: chr18_27982028_27983082
seq2: B6Ng01-046E15.g_66_1111

seq1  GAATTCCCTATTGCATGTGCCATGTATAACTTCCCCTTCATGAGATATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTATTGCATGTGCCATGTATAACTTCCCCTTCATGAGATATTG  50

seq1  CATGTGCCACAGATAACTTTTTCCTTCATGAGACATTGCATGTGTCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCCACAGATAACTTTTTCCTTCATGAGACATTGCATGTGTCACAG  100

seq1  ACAACTATTTCCTTCATGAGACATCACTCTTTAGCTTTTCAAGGACTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTATTTCCTTCATGAGACATCACTCTTTAGCTTTTCAAGGACTAAG  150

seq1  AATCTCCATATCCAGGCATCCTACAGAATGTAGAGAAATCAAAGGAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCATATCCAGGCATCCTACAGAATGTAGAGAAATCAAAGGAGAAT  200

seq1  CATGCTGTTGTTTTCCAATGTGAGATAACCCAGTGAAGGAAGAGTCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGTTGTTTTCCAATGTGAGATAACCCAGTGAAGGAAGAGTCATCT  250

seq1  CTGCATATTATTCACAGTCTGTTGACTAGAGAAGGCAATTAAGAAGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATATTATTCACAGTCTGTTGACTAGAGAAGGCAATTAAGAAGGAAT  300

seq1  TTCATTTATGAGGAGAGATCTAACCCTGAGGTATTTTTAAAAGACTACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTATGAGGAGAGATCTAACCCTGAGGTATTTTTAAAAGACTACAA  350

seq1  TCCCAGCAGTTGGTTGAAGGTAGAAGAATCAGGACCTCAAAACCATCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCAGTTGGTTGAAGGTAGAAGAATCAGGACCTCAAAACCATCATC  400

seq1  CCTACATAATGAATTGGCAGCTAGCCTGAGATAAGATGACACAAATGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATAATGAATTGGCAGCTAGCCTGAGATAAGATGACACAAATGAAA  450

seq1  GAGAGGAAAGATGATATAATAATATATAGTTCATTTATGAACACTTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAAAGATGATATAATAATATATAGTTCATTTATGAACACTTAAGT  500

seq1  ATTTGTCCACCAGAGGCAATCCATGTGTAATGTAGTTTTTTTCTTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCCACCAGAGGCAATCCATGTGTAATGTAGTTTTTTTCTTTTTAA  550

seq1  TTCTCCTCTTTCTTCTATTTCTTTTTAGTTGTATCTCCCTCAAAACCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTTTCTTCTATTTCTTTTTAGTTGTATCTCCCTCAAAACCTTC  600

seq1  ATGTTTTGTATTGTCATCAAAATGTATCATAGAACTTCATCTACATTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGTATTGTCATCAAAATGTATCATAGAACTTCATCTACATTGAT  650

seq1  GGCAATGCAATCCTTGTATACTGTTTGGTATTCCATTAAAGCTTGGCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGCAATCCTTGTATACTGTTTGGTATTCCATTAAAGCTTGGCTAC  700

seq1  TCATTTCATTGTTTTTCTTTCACTTAGATTTCTCCTTTTCAAACATGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCATTGTTTTTCTTTCACTTAGATTTCTCCTTTTCAAACATGAGC  750

seq1  TTACAAGTTCAGTTCTTTCCCATTTTAGAAAATTCCATCGTCAGTGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGTTCAGTTCTTTCCCATTTTAGAAAATTCCATCGTCAGTGAAAT  800

seq1  CGTTTCTCTTGAATCTACTTTACCTATTCTAATATCCTATCATGCTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCTCTTGAATCTACTTTACCTATTCTAATATCCTATCATGCTTCTT  850

seq1  GAATGAGCTCCCTATACTTTCTGATAAAATAAAGTACTTCATTTTTCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGCTCCCTATACTTTCTGATAAAATAAAGTACTTCATTTTTCATC  900

seq1  TATGCTTGCTTTATTCACTGAAATTTTTGGAAGAATTACAATGAAAAATG  950
      ||||||||||||||||||||||| ||||||||| ||||| ||| ||||||
seq2  TATGCTTGCTTTATTCACTGAAA-TTTTGGAAG-ATTAC-ATG-AAAATG  946

seq1  CTAAGTTTTTCTGCAGGTTCCCCACAAAACTTGAGCCCAAGAAATGTATT  1000
      ||||||||||||||| ||||||||| |||||||||||||||||||||| |
seq2  CTAAGTTTTTCTGCA-GTTCCCCAC-AAACTTGAGCCCAAGAAATGTAAT  994

seq1  TAATGACTCATCTTCCTCCGCTGTGCTACTTTCTTTCACAATGCTCTGGA  1050
      | |||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  T-ATGACTCATC-TCCTCCGCTGTGCTACTTTCTTTCAC-ATGCTCTGGA  1041

seq1  GCATT  1055
      |||||
seq2  GCATT  1046