BAC Information

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BAC

Clone NameB6Ng01-046J16
Chromosome14 (Build37)
Map Location 53,471,680 - 53,548,193
singlet/doubletdoublet
Overlap geneEG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850
Upstream geneEar6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931
Downstream geneLOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046J16.bB6Ng01-046J16.g
ACCDH871715DH871716
length1,1021,119
definitionDH871715|Mus musculus domesticus DNA, BAC clone: B6Ng01-046J16, 5' end.DH871716|Mus musculus domesticus DNA, BAC clone: B6Ng01-046J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,547,090 - 53,548,193)(53,471,680 - 53,472,815)
sequence
gaattctcagggtctcttttctttccatagctgaacaaatgccaatggag
agcttaggatgctttccaggttcttgcttatagcaagggaagcagagaga
ggcactgtctacataagtgcagttgatgatggcactggacccttctggcc
tcttaggatgaaagaaagctcttacacatgctgaccttggctcatcccta
tccagaaagatggaaagagaagagaaaggctgtggcatcatcacttccag
gattctctttgtctatagtaactaaagaaatcctgagtaaaacagtggtc
ccatagatgtctcaggaatgcccactgatgattctctggccctagaatat
taactcattaatgagatatagacagaaaaatgtaaataaactagcaacac
atgtcttcattgttcttcccagatcttgatgactggcagttgacttataa
ttatcagagggtggttgtttctcagtaacaattctagctctggagtcgtc
cactcagccactgagaaaaaggctttgcttctgccccaagccttaatcat
cagcatacacagaagtgagctctccgcatattccttagcagttgagattt
actaccaccttgtggttgcattcaaagccagtcaggactctagttaagtg
ctctctgaccctatgagtgactcagacacatgaaacagcaacatgtcata
tcaaatatgttctaatattgaaagatcaataatggtatttgtacacacta
gtgaggttatttcttagctttaaacctaatgcatcatatacactatattt
cacatgcaagtgtatatatgtgacgttttcatatataaatgtatgtgtga
tatattccgatataatgtgtgtatatgtaacattacttctatctagtact
gtatttactaatccactctcatatcacagagtacttttatcatttatcaa
gcaactcttccttttcttggaaatgatattaggtctctgtttgttcttga
gagttatgacacctgagaaatggctttttttcatgtcttcttataaggct
ttcggtgcagaagacaatgtccacctaatttcagggaattcttatgacaa
tg
gaattcataaatgttgaggagaaaatggaatggaggtaaaggcaggcttc
caggtagaactgctgtggacagggtcagggttagtgaggagaaatcaaac
tgcaaccacagcaaaaacattgaaccgtgtaagatgcagaatgcacagat
agctgcttgctctcgtcgcctttctgctgctgggataaaacactgagtaa
aagcaacctagaaggtgatcagatttattaagctttcacttccaggtcat
agttcaaccattggttctagttaaggcaggaactcaaacaagagattcaa
acagaaaccatgcaggaaggctgttgctaacttactagcagaatcatccc
taattaacttccttacacaacccagaaccactttcccacagaacagtgtc
acccacagtgattttttgaatcttctaattcattatcgagggttagcttt
catttattaattttatgcatcgttactttgaatttttttcagtagagatc
tggacatctttaagaaaatagaccagggagtatgtaaaaatactcaaaac
atattgttatttaaacaatatgtacacatatttcaagtaattttaaatag
aataactaaaaagtgttcttacaactcaataaaagagaatgattgactcc
tataatgagcaaaatgagcagactctctaaatgaacgtgtatgggataag
gacaaatacttagaatgcaattagggattgtctgttttcgtacagtggtg
gttgtagggtctccatgactttactagaagatggaggccagtgcagaaaa
ccacaacaaatcaaggtgcagtgctgcggagcccagtaacagaagatgtg
tctacagtacaacccctcctgctgctgctaaggctcagaaacactgaaga
agacaggaggaaagatggcagagccagagggtcaggtgttgctgagtaat
gtgtctcctgggattttggaagctgcacagatgagactcacacgtgagct
gaaatgcacagcacagacttgctaaggtggatgggaagcacagttctctg
ttctagacagtgacctactgaacagaatgctgaatgtaagaaagagtctt
tctgtgaaccagcacacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_53547090_53548193
seq2: B6Ng01-046J16.b_43_1144 (reverse)

seq1  CATTGTCAATAAGAATTCACTGAAA-TAGGTGGAACATTGTCCTCTTGCA  49
      ||||||| |||||||||| |||||| ||||||| |||||||| || ||| 
seq2  CATTGTC-ATAAGAATTCCCTGAAATTAGGTGG-ACATTGTCTTC-TGC-  46

seq1  ACCGAAAGCC-TATAAG-AGACATGAAAAAAAGCCATTTCTCAGGTGTCA  97
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  ACCGAAAGCCTTATAAGAAGACATGAAAAAAAGCCATTTCTCAGGTGTCA  96

seq1  TAACTCTCAAGAACAAACAGAGACCTAAATATCATTTCCAAGAAAAGGAA  147
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAACTCTCAAGAACAAACAGAGACCT-AATATCATTTCCAAGAAAAGGAA  145

seq1  GAGTTGCTTGATAAATGATAAAAGTACTCTGTGATATGAGAGTGGATTAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCTTGATAAATGATAAAAGTACTCTGTGATATGAGAGTGGATTAG  195

seq1  TAAATACAGTACTAGATAGAAGTAATGTTACATATACACACATTATATCG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACAGTACTAGATAGAAGTAATGTTACATATACACACATTATATCG  245

seq1  GAATATATCACACATACATTTATATATGAAAACGTCACATATATACACTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATCACACATACATTTATATATGAAAACGTCACATATATACACTT  295

seq1  GCATGTGAAATATAGTGTATATGATGCATTAGGTTTAAAGCTAAGAAATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGAAATATAGTGTATATGATGCATTAGGTTTAAAGCTAAGAAATA  345

seq1  ACCTCACTAGTGTGTACAAATACCATTATTGATCTTTCAATATTAGAACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACTAGTGTGTACAAATACCATTATTGATCTTTCAATATTAGAACA  395

seq1  TATTTGATATGACATGTTGCTGTTTCATGTGTCTGAGTCACTCATAGGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATATGACATGTTGCTGTTTCATGTGTCTGAGTCACTCATAGGGT  445

seq1  CAGAGAGCACTTAACTAGAGTCCTGACTGGCTTTGAATGCAACCACAAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCACTTAACTAGAGTCCTGACTGGCTTTGAATGCAACCACAAGG  495

seq1  TGGTAGTAAATCTCAACTGCTAAGGAATATGCGGAGAGCTCACTTCTGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTAAATCTCAACTGCTAAGGAATATGCGGAGAGCTCACTTCTGTG  545

seq1  TATGCTGATGATTAAGGCTTGGGGCAGAAGCAAAGCCTTTTTCTCAGTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGATGATTAAGGCTTGGGGCAGAAGCAAAGCCTTTTTCTCAGTGG  595

seq1  CTGAGTGGACGACTCCAGAGCTAGAATTGTTACTGAGAAACAACCACCCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGGACGACTCCAGAGCTAGAATTGTTACTGAGAAACAACCACCCT  645

seq1  CTGATAATTATAAGTCAACTGCCAGTCATCAAGATCTGGGAAGAACAATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAATTATAAGTCAACTGCCAGTCATCAAGATCTGGGAAGAACAATG  695

seq1  AAGACATGTGTTGCTAGTTTATTTACATTTTTCTGTCTATATCTCATTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGTGTTGCTAGTTTATTTACATTTTTCTGTCTATATCTCATTAA  745

seq1  TGAGTTAATATTCTAGGGCCAGAGAATCATCAGTGGGCATTCCTGAGACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAATATTCTAGGGCCAGAGAATCATCAGTGGGCATTCCTGAGACA  795

seq1  TCTATGGGACCACTGTTTTACTCAGGATTTCTTTAGTTACTATAGACAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGGACCACTGTTTTACTCAGGATTTCTTTAGTTACTATAGACAAA  845

seq1  GAGAATCCTGGAAGTGATGATGCCACAGCCTTTCTCTTCTCTTTCCATCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCCTGGAAGTGATGATGCCACAGCCTTTCTCTTCTCTTTCCATCT  895

seq1  TTCTGGATAGGGATGAGCCAAGGTCAGCATGTGTAAGAGCTTTCTTTCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATAGGGATGAGCCAAGGTCAGCATGTGTAAGAGCTTTCTTTCAT  945

seq1  CCTAAGAGGCCAGAAGGGTCCAGTGCCATCATCAACTGCACTTATGTAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGGCCAGAAGGGTCCAGTGCCATCATCAACTGCACTTATGTAGA  995

seq1  CAGTGCCTCTCTCTGCTTCCCTTGCTATAAGCAAGAACCTGGAAAGCATC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCTCTCTCTGCTTCCCTTGCTATAAGCAAGAACCTGGAAAGCATC  1045

seq1  CTAAGCTCTCCATTGGCATTTGTTCAGCTATGGAAAGAAAAGAGACCCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTCTCCATTGGCATTTGTTCAGCTATGGAAAGAAAAGAGACCCTG  1095

seq1  AGAATTC  1104
      |||||||
seq2  AGAATTC  1102

seq1: chr14_53471680_53472815
seq2: B6Ng01-046J16.g_68_1186

seq1  GAATTCATAAATGTTGAGGAGAAAATGGAATGGAGGTAAAGGCAGGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAATGTTGAGGAGAAAATGGAATGGAGGTAAAGGCAGGCTTC  50

seq1  CAGGTAGAACTGCTGTGGACAGGGTCAGGGTTAGTGAGGAGAAATCAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGAACTGCTGTGGACAGGGTCAGGGTTAGTGAGGAGAAATCAAAC  100

seq1  TGCAACCACAGCAAAAACATTGAACCGTGTAAGATGCAGAATGCACAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCACAGCAAAAACATTGAACCGTGTAAGATGCAGAATGCACAGAT  150

seq1  AGCTGCTTGCTCTCGTCGCCTTTCTGCTGCTGGGATAAAACACTGAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTGCTCTCGTCGCCTTTCTGCTGCTGGGATAAAACACTGAGTAA  200

seq1  AAGCAACCTAGAAGGTGATCAGATTTATTAAGCTTTCACTTCCAGGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACCTAGAAGGTGATCAGATTTATTAAGCTTTCACTTCCAGGTCAT  250

seq1  AGTTCAACCATTGGTTCTAGTTAAGGCAGGAACTCAAACAAGAGATTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAACCATTGGTTCTAGTTAAGGCAGGAACTCAAACAAGAGATTCAA  300

seq1  ACAGAAACCATGCAGGAAGGCTGTTGCTAACTTACTAGCAGAATCATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAACCATGCAGGAAGGCTGTTGCTAACTTACTAGCAGAATCATCCC  350

seq1  TAATTAACTTCCTTACACAACCCAGAACCACTTTCCCACAGAACAGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACTTCCTTACACAACCCAGAACCACTTTCCCACAGAACAGTGTC  400

seq1  ACCCACAGTGATTTTTTGAATCTTCTAATTCATTATCGAGGGTTAGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGTGATTTTTTGAATCTTCTAATTCATTATCGAGGGTTAGCTTT  450

seq1  CATTTATTAATTTTATGCATCGTTACTTTGAATTTTTTTCAGTAGAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTAATTTTATGCATCGTTACTTTGAATTTTTTTCAGTAGAGATC  500

seq1  TGGACATCTTTAAGAAAATAGACCAGGGAGTATGTAAAAATACTCAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATCTTTAAGAAAATAGACCAGGGAGTATGTAAAAATACTCAAAAC  550

seq1  ATATTGTTATTTAAACAATATGTACACATATTTCAAGTAATTTTAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTATTTAAACAATATGTACACATATTTCAAGTAATTTTAAATAG  600

seq1  AATAACTAAAAAGTGTTCTTACAACTCAATAAAAGAGAATGATTGACTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTAAAAAGTGTTCTTACAACTCAATAAAAGAGAATGATTGACTCC  650

seq1  TATAATGAGCAAAATGAGCAGACTCTCTAAATGAACGTGTATGGGATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGAGCAAAATGAGCAGACTCTCTAAATGAACGTGTATGGGATAAG  700

seq1  GACAAATACTTAGAATGCAATTAGGGATTGTCTGTTTTCGTACAGTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATACTTAGAATGCAATTAGGGATTGTCTGTTTTCGTACAGTGGTG  750

seq1  GTTGTAGGGTCTCCATGACTTTACTAGAAGATGGAGGCCAGTGCAGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGGGTCTCCATGACTTTACTAGAAGATGGAGGCCAGTGCAGAAAA  800

seq1  CCACAACAAATCAAGGTGCAGTGCTGCGGAGCCCAGTAACAGAAGATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACAAATCAAGGTGCAGTGCTGCGGAGCCCAGTAACAGAAGATGTG  850

seq1  TCTACAGTACAACCCCTCCTGCTGCTGCTAAGGCTCAGGAAACACTGAAG  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCTACAGTACAACCCCTCCTGCTGCTGCTAAGGCTCA-GAAACACTGAAG  899

seq1  AAGACAGGAGGAAAGATGGCAAGAGCCAGAGGGTCAGGGTGTTGCTGAGT  950
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  AAGACAGGAGGAAAGATGGC-AGAGCCAGAGGGTCA-GGTGTTGCTGAGT  947

seq1  AATTGTGTCTCCTGGGAATTTTGGAAGCTGCACAGATGAAGACTCACCAA  1000
      || ||||||||||||| ||||||||||||||||||||| ||||||||  |
seq2  AA-TGTGTCTCCTGGG-ATTTTGGAAGCTGCACAGATG-AGACTCAC--A  992

seq1  CGTGAGCTGAAATGCAACAGCCACAGACTTGCTAAAGTGGATGGGGAAAG  1050
      ||||||||||||||| |||| |||||||||||||| |||||||||  |||
seq2  CGTGAGCTGAAATGC-ACAG-CACAGACTTGCTAAGGTGGATGGG--AAG  1038

seq1  CACAG-TCTCTGTTCTAGACAGTGACCTACTGGAAACCAAGAATGCTGAT  1099
      ||||| ||||||||||||||||||||||||||  |||  |||||||||| 
seq2  CACAGTTCTCTGTTCTAGACAGTGACCTACTG--AAC--AGAATGCTGAA  1084

seq1  GGTGAGGAAGTAGTCTTTCTGTGAGACGAGCACACCA  1136
       || || ||| ||||||||||||| || |||||||||
seq2  TGTAAGAAAG-AGTCTTTCTGTGA-ACCAGCACACCA  1119