BAC Information

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BAC

Clone NameB6Ng01-046M04
Chromosome14 (Build37)
Map Location 84,032,267 - 84,204,136
singlet/doubletdoublet
Overlap geneLOC100043279
Upstream geneLOC100043773
Downstream geneLOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046M04.bB6Ng01-046M04.g
ACCDH871826DH871827
length1,132411
definitionDH871826|Mus musculus domesticus DNA, BAC clone: B6Ng01-046M04, 5' end.DH871827|Mus musculus domesticus DNA, BAC clone: B6Ng01-046M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,202,967 - 84,204,136)(84,032,267 - 84,032,683)
sequence
gaattcattcattccaggaaggatcatttacagtggttgcccaatgagca
gtggtcagccctgaaacactacacacaaataacaaaaactggctcagcag
ggttgtttacatatttgagcagatacacatatatgtaacaataataaaga
aaaagagtctaccaattagagaatgaggtaatggcaaggattggtggaag
gatacccagagaagtagagagaggttcctcaaggggctggattaggaaag
ggagaaggaaagtgaagtaaatctggttgaaataaaaaacaaatttttaa
atgaataaataaaggaaaaaaactttcttttggtaaatagctataatttc
atcagagacaatattaattaaattaaaataaacagatttttgtgttccat
ctttaaaataacttaagtcccacataatccctttctgtcttttaatatgt
ttactattatagttctatctagatttagttgacaaaatatcctgtgttca
attttatctatatccttaagtagtcaaggaaagaatcataagtgccagta
atcagtaatttgcattcagccatcagtgaaaaaactttcccccaatgtct
cagcaataggtggaaatgggttttcctcaggatggaacttgactatttca
ctatgccaattgttggagcctgaatgtgcgaagttacagccatgcaggga
gaggctgtttttagggtattaggagacacattgtcaagagcatcagcaga
agcagactgcactgcagctgttctcttgcattatataagagatccatatt
ttaactcttagctgtcataagcaattaacaagaaacggaaaaaaaaacac
ttcacattctcataaataacaggaacttcacacgcattgacatatgcact
acagagttcattttcttttcaaatatccaaacttcactcacctcaggagt
atttttttaagattgtttacagttactgtttttatttcttgatatgttat
cacagtatgaaattactagatatcactatttatctgaaaatgcaatttgc
attattgcattaggttgctttgctctacatggtaagaactgagcatgatg
gagtgtatgataatgcaatggagataatgcac
acgaaatttttagataaatatatggatctggaggatatcatcctaaggaa
gaggaacaacaataagaaccaaccagtacccccccccccctcagagctcc
caggaactaaatcaccaaccaaagagtacacatggagggacttatgtctc
cagctgcatgtagcagagggtggcctttttggtcatcaatgggaggagag
gcccatggtactgtgaaagctcaatgccctaatgtttggtaatgccaggg
cccggaagtgggagtgggtaagatggtgagcagggagatgggggagggga
tagtagttttcagattggaaaccaggaaagacaataacatttgaaatgta
aataaggaaaatatctaattttttttttaaaaaaaagcttttttaaggta
aaatacatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84202967_84204136
seq2: B6Ng01-046M04.b_47_1178 (reverse)

seq1  GTGCATTATATCTTCCATATTGCATTTTATTTCATAACACTCCATCATGC  50
      ||||||||| ||      |||||||    | |||| ||||||||||||||
seq2  GTGCATTATCTC-----CATTGCAT----TATCAT-ACACTCCATCATGC  40

seq1  TTCAGTTCTTTATCAATGATAGAAGCAAAAGCATACCTAAAATGCCAAAT  100
       |||||||||   | ||| ||| ||| |||||| ||||  |||||  |||
seq2  -TCAGTTCTT--ACCATG-TAG-AGC-AAAGCA-ACCT--AATGC--AAT  79

seq1  AAATGCAAATATGCATTTTTCCAGATAAATAGTGAATAATCTAGTATATT  150
       ||||||||| ||||||||  ||||||||||||||   |||||||| |||
seq2  -AATGCAAAT-TGCATTTT--CAGATAAATAGTGA--TATCTAGTA-ATT  122

seq1  TCATAACTGTGATAACATATCAAGAAAATAAAAACAGTAAACTGTAAACA  200
      |||| ||||||||||||||||||| ||||||||||||| |||||||||||
seq2  TCAT-ACTGTGATAACATATCAAG-AAATAAAAACAGT-AACTGTAAACA  169

seq1  ATCTTTAAAAAAATACTCCCTGAGGTGGAGTGAAGTTTTGGATATTTTGA  250
      ||| ||||||||||||| |||||||| |||||||| |||||||| |||||
seq2  ATC-TTAAAAAAATACT-CCTGAGGT-GAGTGAAG-TTTGGATA-TTTGA  214

seq1  AAAGAAAATTGAACTCTGTAGTTGCATATGTCAATGCGTGTGAAGTTCCT  300
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  AAAGAAAA-TGAACTCTGTAG-TGCATATGTCAATGCGTGTGAAGTTCCT  262

seq1  GTTATTTATGAGAATGTGAAGTGTTTTTTTTTCCGTTTCTTGTTAATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTATGAGAATGTGAAGTGTTTTTTTTTCCGTTTCTTGTTAATTGC  312

seq1  TTATGACAGCTAAGAGTTAAAATATGGATCTCTTATATAATGCAAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACAGCTAAGAGTTAAAATATGGATCTCTTATATAATGCAAGAGAA  362

seq1  CAGCTGCAGTGCAGTCTGCTTCTGCTGATGCTCTTGACAATGTGTCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAGTGCAGTCTGCTTCTGCTGATGCTCTTGACAATGTGTCTCCT  412

seq1  AATACCCTAAAAACAGCCTCTCCCTGCATGGCTGTAACTTCGCACATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCTAAAAACAGCCTCTCCCTGCATGGCTGTAACTTCGCACATTCA  462

seq1  GGCTCCAACAATTGGCATAGTGAAATAGTCAAGTTCCATCCTGAGGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCAACAATTGGCATAGTGAAATAGTCAAGTTCCATCCTGAGGAAAA  512

seq1  CCCATTTCCACCTATTGCTGAGACATTGGGGGAAAGTTTTTTCACTGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTCCACCTATTGCTGAGACATTGGGGGAAAGTTTTTTCACTGATG  562

seq1  GCTGAATGCAAATTACTGATTACTGGCACTTATGATTCTTTCCTTGACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATGCAAATTACTGATTACTGGCACTTATGATTCTTTCCTTGACTA  612

seq1  CTTAAGGATATAGATAAAATTGAACACAGGATATTTTGTCAACTAAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGATATAGATAAAATTGAACACAGGATATTTTGTCAACTAAATCT  662

seq1  AGATAGAACTATAATAGTAAACATATTAAAAGACAGAAAGGGATTATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAACTATAATAGTAAACATATTAAAAGACAGAAAGGGATTATGTG  712

seq1  GGACTTAAGTTATTTTAAAGATGGAACACAAAAATCTGTTTATTTTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTAAGTTATTTTAAAGATGGAACACAAAAATCTGTTTATTTTAATT  762

seq1  TAATTAATATTGTCTCTGATGAAATTATAGCTATTTACCAAAAGAAAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATATTGTCTCTGATGAAATTATAGCTATTTACCAAAAGAAAGTT  812

seq1  TTTTTCCTTTATTTATTCATTTAAAAATTTGTTTTTTATTTCAACCAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTTTATTTATTCATTTAAAAATTTGTTTTTTATTTCAACCAGAT  862

seq1  TTACTTCACTTTCCTTCTCCCTTTCCTAATCCAGCCCCTTGAGGAACCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCACTTTCCTTCTCCCTTTCCTAATCCAGCCCCTTGAGGAACCTC  912

seq1  TCTCTACTTCTCTGGGTATCCTTCCACCAATCCTTGCCATTACCTCATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTTCTCTGGGTATCCTTCCACCAATCCTTGCCATTACCTCATTC  962

seq1  TCTAATTGGTAGACTCTTTTTCTTTATTATTGTTACATATATGTGTATCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTGGTAGACTCTTTTTCTTTATTATTGTTACATATATGTGTATCT  1012

seq1  GCTCAAATATGTAAACAACCCTGCTGAGCCAGTTTTTGTTATTTGTGTGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAATATGTAAACAACCCTGCTGAGCCAGTTTTTGTTATTTGTGTGT  1062

seq1  AGTGTTTCAGGGCTGACCACTGCTCATTGGGCAACCACTGTAAATGATCC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCAGGGCTGACCACTGCTCATTGGGCAACCACTGTAAATGATCC  1112

seq1  TTCCTGGAATGAATGAATTC  1170
      ||||||||||||||||||||
seq2  TTCCTGGAATGAATGAATTC  1132

seq1: chr14_84032267_84032683
seq2: B6Ng01-046M04.g_64_480

seq1  GAATTCACGAAATTTTTAGATAAATATATGGATCTGGAGGATATCATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGAAATTTTTAGATAAATATATGGATCTGGAGGATATCATCCT  50

seq1  AAGGAAGAGGAACAACAATAAGAACCAACCAGTACCCCCCCCCCCCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAGGAACAACAATAAGAACCAACCAGTACCCCCCCCCCCCTCAG  100

seq1  AGCTCCCAGGAACTAAATCACCAACCAAAGAGTACACATGGAGGGACTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCAGGAACTAAATCACCAACCAAAGAGTACACATGGAGGGACTTA  150

seq1  TGTCTCCAGCTGCATGTAGCAGAGGGTGGCCTTTTTGGTCATCAATGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCAGCTGCATGTAGCAGAGGGTGGCCTTTTTGGTCATCAATGGGA  200

seq1  GGAGAGGCCCATGGTACTGTGAAAGCTCAATGCCCTAATGTTTGGTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGCCCATGGTACTGTGAAAGCTCAATGCCCTAATGTTTGGTAATG  250

seq1  CCAGGGCCCGGAAGTGGGAGTGGGTAAGATGGTGAGCAGGGAGATGGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCCCGGAAGTGGGAGTGGGTAAGATGGTGAGCAGGGAGATGGGGG  300

seq1  AGGGGATAGTAGTTTTCAGATTGGAAACCAGGAAAGACAATAACATTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATAGTAGTTTTCAGATTGGAAACCAGGAAAGACAATAACATTTGA  350

seq1  AATGTAAATAAGGAAAATATCTAATTTATTTCTTAAAAAAAAGCTTTTAT  400
      ||||||||||||||||||||||||||| ||| |||||||||||||||| |
seq2  AATGTAAATAAGGAAAATATCTAATTTTTTTTTTAAAAAAAAGCTTTTTT  400

seq1  AAGGTAAAATACATATT  417
      |||||||||||||||||
seq2  AAGGTAAAATACATATT  417