BAC Information

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BAC

Clone NameB6Ng01-046N09
Chromosome14 (Build37)
Map Location 59,220,216 - 59,375,646
singlet/doubletdoublet
Overlap genenone
Upstream geneXpo4, Lats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
Downstream geneEG668177, EG668182, 1700129C05Rik, EG380907, Rcbtb1, EG628693, Phf11, EG236451, D14Ertd668e, EG628705, Setdb2, Cab39l, Cdadc1, Tmem46, Atp8a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046N09.bB6Ng01-046N09.g
ACCDH871879DH871880
length9241,050
definitionDH871879|Mus musculus domesticus DNA, BAC clone: B6Ng01-046N09, 5' end.DH871880|Mus musculus domesticus DNA, BAC clone: B6Ng01-046N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,374,719 - 59,375,646)(59,220,216 - 59,221,294)
sequence
gaattctaatactatagtaataatatctatctttagaattttaggtaaat
cttgagttccaccacagctcccgtaggcccatcatcatctttcatatttt
cataggagatgctgttttctaacatgcgaccctgtgctgggtggcctctt
cctccattttgctatttgaagccctatggaaagtttgcattaggcccagg
aggcgtgggtgaacacctgccatcccatgcaggcgaaagtcatcacccac
caggtcattggggttcaaggtctgtctgtgcacagatcactgcctcacag
agatcataacgtttgggattccactgccccatctcccctggggcttctgc
acctctctgtacagtccatgtggtacctgaatctctcacacccctccatg
tgcttcttgctctagtagaacaaccaagacaatctttctggtggttccaa
actcaaaagcatagcagagaacccagtcagacctgctagtaattagtgca
gaactgctagtagttagtgcaaaagtcgcctacaaattattacttctgcc
acattccatggctaaaagcaagtcccaataaaaaaaatgcaaattcttga
caggagggaactacttatgggcataggatcctatcagcctaaaatgattt
gtctaagtatgtagtagttttatcagaaacttgtttggcactaaaatgag
aatttttttttttaaaaagcaagggagagaacaaatgactactaaattta
tttaaggtactgattaggggatcaggggaatgactcgacagttaaagggg
cttgtcaagcttgactagttgagttcatctctgggactaacatggtggag
agatcaattcccttatgttgtctgcagctctatgtatgctctctctctct
ctctctctctctctctctcactct
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
accacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccatttttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaaccgaatg
tatttttaacatcattagaaaggagtttgctctgcctttctgttgagaag
gggtaggtttgcttggcagggaatgggagaaaatagctttgaaaagaaat
ataagttttaagtagctcttgagaggaatcaaagaagaactagctagcgt
ttattgagcacctattgtgttgcaaccaacatttaattagtttacatgta
ctaatgcctgtggttcttataataattctacaaatcagatacaacaatca
cctcttttacagattaggaaactgaggcacagagattaaataccttggta
gatgcagatgtgaacccaacattgtgactccttagcccattattttaaag
acttgcatattttcagttaaatttcagtagttccttcacaaatattattc
aaatgttttctgtgtgccaagcacttgtttgaatcttgtgagatacatta
aaaaccatatggccaagattccagtgttcatgtttttttgtgatgagatt
tggtgagaatctggatataaattactcaggtgatagcatgttagagaaga
tgaatagaacagcagctgataagaaggctggagtcatactagatcacttg
agattggacatgtgttgcgtgttgttgtgtgtacatggatctttctcaat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_59374719_59375646
seq2: B6Ng01-046N09.b_45_968 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGCATACATAGAGGC  50
      |||| |||||||||||||||||||||||||||| ||||||||||||| ||
seq2  AGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGA-GAGCATACATAGA-GC  48

seq1  TGCAGAACAACATAAGGGAATTGATTCTCTCCACCATGTTAGTCCCAGAG  100
      ||||| |||||||||||||||||| |||||||||||||||||||||||||
seq2  TGCAG-ACAACATAAGGGAATTGA-TCTCTCCACCATGTTAGTCCCAGAG  96

seq1  ATGGAACTCAACTAGTCAAGCTTGACAAGCCCCTTTAACTGTCGAGTCAT  150
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-GAACTCAACTAGTCAAGCTTGACAAGCCCCTTTAACTGTCGAGTCAT  145

seq1  TCCCCTGATCCCCTAATCAGTACCTTAAATAAATTTAGTAGTCATTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGATCCCCTAATCAGTACCTTAAATAAATTTAGTAGTCATTTGTT  195

seq1  CTCTCCCTTGCTTTTT-AAAAAAAAAATTCTCATTTTAGTGCCAAACAAG  249
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCTCCCTTGCTTTTTAAAAAAAAAAATTCTCATTTTAGTGCCAAACAAG  245

seq1  TTTCTGATAAAACTACTACATACTTAGACAAATCATTTTAGGCTGATAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATAAAACTACTACATACTTAGACAAATCATTTTAGGCTGATAGG  295

seq1  ATCCTATGCCCATAAGTAGTTCCCTCCTGTCAAGAATTTGCATTTTTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATGCCCATAAGTAGTTCCCTCCTGTCAAGAATTTGCATTTTTTTT  345

seq1  ATTGGGACTTGCTTTTAGCCATGGAATGTGGCAGAAGTAATAATTTGTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGACTTGCTTTTAGCCATGGAATGTGGCAGAAGTAATAATTTGTAG  395

seq1  GCGACTTTTGCACTAACTACTAGCAGTTCTGCACTAATTACTAGCAGGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACTTTTGCACTAACTACTAGCAGTTCTGCACTAATTACTAGCAGGTC  445

seq1  TGACTGGGTTCTCTGCTATGCTTTTGAGTTTGGAACCACCAGAAAGATTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGGTTCTCTGCTATGCTTTTGAGTTTGGAACCACCAGAAAGATTG  495

seq1  TCTTGGTTGTTCTACTAGAGCAAGAAGCACATGGAGGGGTGTGAGAGATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTGTTCTACTAGAGCAAGAAGCACATGGAGGGGTGTGAGAGATT  545

seq1  CAGGTACCACATGGACTGTACAGAGAGGTGCAGAAGCCCCAGGGGAGATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACCACATGGACTGTACAGAGAGGTGCAGAAGCCCCAGGGGAGATG  595

seq1  GGGCAGTGGAATCCCAAACGTTATGATCTCTGTGAGGCAGTGATCTGTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGGAATCCCAAACGTTATGATCTCTGTGAGGCAGTGATCTGTGC  645

seq1  ACAGACAGACCTTGAACCCCAATGACCTGGTGGGTGATGACTTTCGCCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACCTTGAACCCCAATGACCTGGTGGGTGATGACTTTCGCCTG  695

seq1  CATGGGATGGCAGGTGTTCACCCACGCCTCCTGGGCCTAATGCAAACTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGATGGCAGGTGTTCACCCACGCCTCCTGGGCCTAATGCAAACTTT  745

seq1  CCATAGGGCTTCAAATAGCAAAATGGAGGAAGAGGCCACCCAGCACAGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGGCTTCAAATAGCAAAATGGAGGAAGAGGCCACCCAGCACAGGG  795

seq1  TCGCATGTTAGAAAACAGCATCTCCTATGAAAATATGAAAGATGATGATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCATGTTAGAAAACAGCATCTCCTATGAAAATATGAAAGATGATGATG  845

seq1  GGCCTACGGGAGCTGTGGTGGAACTCAAGATTTACCTAAAATTCTAAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTACGGGAGCTGTGGTGGAACTCAAGATTTACCTAAAATTCTAAAGA  895

seq1  TAGATATTATTACTATAGTATTAGAATTC  928
      |||||||||||||||||||||||||||||
seq2  TAGATATTATTACTATAGTATTAGAATTC  924

seq1: chr14_59220216_59221294
seq2: B6Ng01-046N09.g_67_1116

seq1  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAACACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAACACCTGAAAAAATG  50

seq1  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100

seq1  ACCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150

seq1  AGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTTTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTTTTGGTG  200

seq1  GGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA  250

seq1  GAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC  300

seq1  ATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTAT  350

seq1  GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCGAATG  400

seq1  TATTTTTAACATCATTAGAAAGGAGTTTGCTCTGCCTTTCTGTTGAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAACATCATTAGAAAGGAGTTTGCTCTGCCTTTCTGTTGAGAAG  450

seq1  GGGTAGGTTTGCTTGGCAGGGAATGGGAGAAAATAGCTTTGAAAAGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGTTTGCTTGGCAGGGAATGGGAGAAAATAGCTTTGAAAAGAAAT  500

seq1  ATAAGTTTTAAGTAGCTCTTGAGAGGAATCAAAGAAGAACTAGCTAGCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTTAAGTAGCTCTTGAGAGGAATCAAAGAAGAACTAGCTAGCGT  550

seq1  TTATTGAGCACCTATTGTGTTGCAACCAACATTTAATTAGTTTACATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAGCACCTATTGTGTTGCAACCAACATTTAATTAGTTTACATGTA  600

seq1  CTAATGCCTGTGGTTCTTATAATAATTCTACAAATCAGATACAACAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCCTGTGGTTCTTATAATAATTCTACAAATCAGATACAACAATCA  650

seq1  CCTCTTTTACAGATTAGGAAACTGAGGCACAGAGATTAAATACCTTGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTACAGATTAGGAAACTGAGGCACAGAGATTAAATACCTTGGTA  700

seq1  GATGCAGATGTGAACCCAACATTGTGACTCCTTAGCCCATTATTTTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGATGTGAACCCAACATTGTGACTCCTTAGCCCATTATTTTAAAG  750

seq1  ACTTGCATATTTTCAGTTAAATTTCAGTAGTTCCTTCAACAAATATTATT  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACTTGCATATTTTCAGTTAAATTTCAGTAGTTCCTTC-ACAAATATTATT  799

seq1  CAAATGTTTTCTGTGTGCCAAGCACTTGTTTGAATCTTGTGAGATAACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAAATGTTTTCTGTGTGCCAAGCACTTGTTTGAATCTTGTGAGAT-ACAT  848

seq1  TAAAAAACCATATGGCCAAGATTCCAGTGTTCATGTTTTTTTGTGATGAA  900
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  T-AAAAACCATATGGCCAAGATTCCAGTGTTCATGTTTTTTTGTGATG-A  896

seq1  GAATTGGTGAGAATCTGGATAATAAAATTACTCAGGTGATAAGCAATGTA  950
      || ||||||||||||||||||   |||||||||||||||| ||||   ||
seq2  GATTTGGTGAGAATCTGGATA--TAAATTACTCAGGTGAT-AGCATGTTA  943

seq1  GAGAAAAGATGAAATAGGACACAGCAGGCTGATAAGAAGGGCTGGAGTCA  1000
      |||  |||||| |||||   |||||| ||||||||||| |||||||||||
seq2  GAG--AAGATG-AATAG--AACAGCA-GCTGATAAGAA-GGCTGGAGTCA  986

seq1  TAACTAGAATTCACTTGAGATTGTGACAATGTGTGTGCGGGTGTGTGTGT  1050
      | ||||||  ||||||||||||| ||| |||||| |||| ||   ||| |
seq2  T-ACTAGA--TCACTTGAGATTG-GAC-ATGTGT-TGCGTGT---TGT-T  1026

seq1  GTGTGTTAACATGGGATCTTTCCCTCAAT  1079
      ||||||  |||| ||||||||  ||||||
seq2  GTGTGT--ACAT-GGATCTTT--CTCAAT  1050