BAC Information

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BAC

Clone NameB6Ng01-047E07
ChromosomeY (Build37)14 (Build37)
Map Location 1,870,346 - 1,870,57586,800,992 - 86,802,080
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047E07.bB6Ng01-047E07.g
ACCDH872180DH872181
length2891,056
definitionDH872180|Mus musculus domesticus DNA, BAC clone: B6Ng01-047E07, 5' end.DH872181|Mus musculus domesticus DNA, BAC clone: B6Ng01-047E07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,575)(86,800,992 - 86,802,080)
sequence
tttgttcagttctgagccccattttttatggatggatcacagggctccca
acggaggagctagagaaagtacccaaggagctaaagggatctgcaaccct
ataggtggaacaacattatgaactaaccagtaccccggagctcttgactc
tagctgcatatgtatcaaaagatggcctagtcggccatcactggaaagag
aggcccattggacacacaaactttatatgccccagaacaggggaacgcca
gggccaaaaagggggagtgggcgggtaggggagtggggg
gaattccaagaccttaacaaaactggctcaggatagataaatgtatgaac
caggcaaatcacatccatacagtcaagccttgtaaaaccaccccctacca
attctgtgcaatgcaaactcctttagagaaaatattggtattgcatggaa
tatggaaaaaaaaaacagatttgaggggaacgggtagagggtaacagctg
tacttccaggcttctgggtctgagtttaaataacttataggttaagagtt
tccattctctcttcaaagcattgttattccttgcaaccttgttaaggcgt
ttattgtgacatcctccttacaggttacagtgagacataatatcaatgag
tttaaaggattttttccccctttgagcaaagcattgttatttaaatgtga
gataaatgcttcttgcttctgaatctgtttgtcacatctcaagaatggaa
caagtaggagactgagactatcaacccactaaaaggcttaagcgaatcac
ttgcagtgaacaccttgcctcacaagctgtgtttccagagccaaggctcc
cagacacccacagcaccagccatgcctcacaataagtgacacccagttag
ggagccaacactttaaaagagataactaaaagcaatatctattgtagcag
acaatttatccccataccacgggtgttccttgcactgctttggactcaca
gatttccagaaaggttaatctttacagctccatcctaactgtgtgcttgg
aaatgaaatacacacagatcccatgagctagcagcatgtgacagatgaca
catcgagatagtcttcacacattcatttccaactcccatcatccacttaa
gcacaatggccctttcagtctgcacatgtgtttcggggacctttgtcatc
gcacagtctctatcatactcagtagcaaatgcttgtgataaatatctctg
agagatgtttgctgagctctatcagcgtggagttctgatagtctatatca
gctagagagacttggtactctggaaaccagtcatattagcatgtgaattt
tttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870575
seq2: B6Ng01-047E07.b_111_340

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      |||||  ||||||||||||||||||| |||||||||||||||||||||||
seq2  GGACACACAAACTTTATATGCCCCAGAACAGGGGAACGCCAGGGCCAAAA  200

seq1  AGGGGCAGTGGGTGGGTAGGGGAGTGGGGG  230
      ||||| |||||| |||||||||||||||||
seq2  AGGGGGAGTGGGCGGGTAGGGGAGTGGGGG  230

seq1: chr14_86800992_86802080
seq2: B6Ng01-047E07.g_67_1122 (reverse)

seq1  AAAAAAAAATTCACCATGCTAAATAATGACTGTGTTTTCCCAAGGAGTAA  50
      ||||||||||||| ||||||||   ||||||| ||||  |||  ||||| 
seq2  AAAAAAAAATTCA-CATGCTAA--TATGACTG-GTTT--CCA--GAGTA-  41

seq1  CACAAGTCCTCTCTAGGCTGAATAATTAGACTATCAGAAACTTCCACGGC  100
        ||||| ||||||| |||| |||  |||||||||||||   ||||||  
seq2  -CCAAGT-CTCTCTA-GCTG-ATA--TAGACTATCAGAA--CTCCACG--  81

seq1  CTGGATAGAGCTCCAGCCAAAAACATCCTCCCTCAGAGATATTTATCACC  150
      || ||||||||| ||||   |||||   || ||||||||||||||||| |
seq2  CT-GATAGAGCT-CAGC---AAACA---TCTCTCAGAGATATTTATCA-C  122

seq1  AAGCATTTGGCTACTGGAGTATGGATAGAGACTGTGCGATGAACAAAGGT  200
      |||||||| |||||| |||||| |||||||||||||||||| ||||||||
seq2  AAGCATTT-GCTACT-GAGTAT-GATAGAGACTGTGCGATG-ACAAAGGT  168

seq1  CCCCGAAACACATGTGCAGACTGAAAGGGCCATTGTGCTTAAGTGGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGAAACACATGTGCAGACTGAAAGGGCCATTGTGCTTAAGTGGATGA  218

seq1  TGGGAGTTGGAAATGGAATGTGTGAAGACTATCTCGATGTGTCATCTGTC  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGGAGTTGGAAAT-GAATGTGTGAAGACTATCTCGATGTGTCATCTGTC  267

seq1  ACATGCTGCTAGCTCATGGGATCTGTGTGTATTTCATTTCCAAGCACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTGCTAGCTCATGGGATCTGTGTGTATTTCATTTCCAAGCACACA  317

seq1  GTTAGGATGGAGCTGTAAAGATTAACCTTTCTGGAAATCTGTGAGTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGATGGAGCTGTAAAGATTAACCTTTCTGGAAATCTGTGAGTCCAA  367

seq1  AGCAGTGCAAGGAACACCCGTGGTATGGGGATAAATTGTCTGCTACAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGCAAGGAACACCCGTGGTATGGGGATAAATTGTCTGCTACAATA  417

seq1  GATATTGCTTTTAGTTATCTCTTTTAAAGTGTTGGCTCCCTAACTGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGCTTTTAGTTATCTCTTTTAAAGTGTTGGCTCCCTAACTGGGTG  467

seq1  TCACTTATTGTGAGGCATGGCTGGTGCTGTGGGTGTCTGGGAGCCTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTATTGTGAGGCATGGCTGGTGCTGTGGGTGTCTGGGAGCCTTGGC  517

seq1  TCTGGAAACACAGCTTGTGAGGCAAGGTGTTCACTGCAAGTGATTCGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAACACAGCTTGTGAGGCAAGGTGTTCACTGCAAGTGATTCGCTT  567

seq1  AAGCCTTTTAGTGGGTTGATAGTCTCAGTCTCCTACTTGTTCCATTCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTTTAGTGGGTTGATAGTCTCAGTCTCCTACTTGTTCCATTCTTG  617

seq1  AGATGTGACAAACAGATTCAGAAGCAAGAAGCATTTATCTCACATTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGACAAACAGATTCAGAAGCAAGAAGCATTTATCTCACATTTAAA  667

seq1  TAACAATGCTTTGCTCAAAGGGGGAAAAAATCCTTTAAACTCATTGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATGCTTTGCTCAAAGGGGGAAAAAATCCTTTAAACTCATTGATAT  717

seq1  TATGTCTCACTGTAACCTGTAAGGAGGATGTCACAATAAACGCCTTAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTCACTGTAACCTGTAAGGAGGATGTCACAATAAACGCCTTAACA  767

seq1  AGGTTGCAAGGAATAACAATGCTTTGAAGAGAGAATGGAAACTCTTAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCAAGGAATAACAATGCTTTGAAGAGAGAATGGAAACTCTTAACC  817

seq1  TATAAGTTATTTAAACTCAGACCCAGAAGCCTGGAAGTACAGCTGTTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTTATTTAAACTCAGACCCAGAAGCCTGGAAGTACAGCTGTTACC  867

seq1  CTCTACCCGTTCCCCTCAAATCTGTTTTTTTTTTCCATATTCCATGCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCCGTTCCCCTCAAATCTGTTTTTTTTTTCCATATTCCATGCAAT  917

seq1  ACCAATATTTTCTCTAAAGGAGTTTGCATTGCACAGAATTGGTAGGGGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATATTTTCTCTAAAGGAGTTTGCATTGCACAGAATTGGTAGGGGGT  967

seq1  GGTTTTACAAGGCTTGACTGTATGGATGTGATTTGCCTGGTTCATACATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTACAAGGCTTGACTGTATGGATGTGATTTGCCTGGTTCATACATT  1017

seq1  TATCTATCCTGAGCCAGTTTTGTTAAGGTCTTGGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCCTGAGCCAGTTTTGTTAAGGTCTTGGAATTC  1056