BAC Information

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BAC

Clone NameB6Ng01-047K16
Chromosome12 (Build37)14 (Build37)
Map Location 11,794,340 - 11,795,43586,220,476 - 86,221,031
singlet/doubletsingletsinglet
Overlap geneLOC628327
Upstream geneLOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390
Downstream geneLOC627110, LOC100043209, D12Ertd553e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047K16.bB6Ng01-047K16.g
ACCDH872467DH872468
length1,086935
definitionDH872467|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K16, 5' end.DH872468|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,794,340 - 11,795,435)(86,220,476 - 86,221,031)
sequence
gaattcagtattgccatgtttattttacaaacagaagaaattgaggggtt
gtagatgtagctcaatggttaagagtatgtattgctcttggagtgagcca
gagcttagttcccagcacccattttgagatgctcataactgcctataact
ctagttccaatacctctcatctctatgaacacccacatacatgtgtatac
ccacatatatacacagtagaagacactaaaagatagccacatcctgagcc
aaagtgcttcaaactcagtacactatcataatgcatttcttcagagccag
cacgcaatacatcctttcaacaccatggttctatttaaactgtttaagat
acagaagacatgaaggtgcaaagagggttgggatgctagtatcaaaatgt
gataatggcccaggaatgagttactgaactgctaagccttggagaacaga
gaattttcttagctctctgtaaatgttttcaggtctcataacataaaatt
cagtaggaagagtcacatttttcccagccctttaacattgctatagcacc
cagttgttcttgctccttgtcagagaaaacactgatttcttgttgagttg
ggtcattacatatgagtgtttgagatgagactatacttttcagagttttt
gacaaaacattataatcaacttctatgtaacatcaagatagtgtcctcaa
ggatattaacctaacatatcacaaagacacctatggagttgtgcaaaaat
gtgaaaaatattcaactaacaatgagtgagatgtatcccaggttgaagtg
gtataaatagaaataggttgtaactatccaatttatacatttagtcacta
gaataaaatggaatatactattcattaaaataaaatggctgtcactctct
ctctttccaagccttatatttcaatcaaataatcaatatttaaaaagaaa
accatgctcttctcctcatagcatattcaccgtgaggagaagtaacggca
agtggatgtagttgtcaccaatctcgctctcagctgaaacgaagggaggc
atagaaaccttctccactctaggatgaagggctgga
gaattctattgagtatttttgatcaatatttataaaggaaatggtctgaa
gttctctatctttgttgggtctttctgtggcttaggtatcagagtgattg
tggcttcatagaatgaactgggtagagtaccttatgtttctatttttgtg
gaatagtttgagaagaactggaattagatctttgaaagtctgatagaact
ctgcactaaacccatctggtcctgggctttttttggttcagagactatta
atgactgcttctatttctttaggggatataggactatttagatcattaac
ctgatcctgacttaacttttgtacctggtaactgtctagaaatatgtcta
tttcatccaggttttccagttttgttgagtatagccttttgtagaaggat
ctgatggtgttttggatttcttcaggatctgttgttatgtctccctttac
atttctgattttgttaattatgatgctgtcactgtgccctctagtgagtc
tggctaagggtttgtctatcttgttgattttctcaaagaaccagttcttt
gtttggttgattctttgaattgttcttcttgttttgttgatttcacccct
gagtttgattatttcctgccgtctactcctcttgggtgactttgtttcct
tttgttctggagcttttaggtgtgttgtcaagctgctagtgtgtgctctc
tctagtttctttttggaggcactcagagctatgatatttcctcttggaaa
tgctttcattgtgtcccaaaagtttgtgtatgttgttgcttcattttaat
taaactctaaaaagtcttaatttttttcttcattcctttctttgaccaag
tatcattgaggagagtgttgttcattttccacgtgaatgttggctttcta
ttatttatgtgttattgaagatcagcctttgtcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_11794340_11795435
seq2: B6Ng01-047K16.b_45_1130 (reverse)

seq1  TCCAGCCC-TCATCCTAGAGTTGAGAAGGTTTTCTATGCTTCCCTTTCTG  49
      |||||||| |||||||||||| ||||||| ||||||||| ||||||   |
seq2  TCCAGCCCTTCATCCTAGAGTGGAGAAGG-TTTCTATGCCTCCCTT--CG  47

seq1  TTTCAGCTGAGAGCGAGATTTGGTGACAACTTACATCCACTTTGCCGTTT  99
      |||||||||||||||||| ||||||||||| ||||||||| |||||| ||
seq2  TTTCAGCTGAGAGCGAGA-TTGGTGACAAC-TACATCCAC-TTGCCG-TT  93

seq1  ACTTTCTCCTCACGGTGAATATGCTATGGAGGGGAAGAGCATGGTTTTTC  149
      || |||||||||||||||||||||||| |||| |||||||||||||||  
seq2  AC-TTCTCCTCACGGTGAATATGCTAT-GAGGAGAAGAGCATGGTTTT--  139

seq1  TTTTTTAAATATTGATTATTTGATTGAAATATAAGGCTTGGAAAGAGAGA  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAATATTGATTATTTGATTGAAATATAAGGCTTGGAAAGAGAGA  189

seq1  GAGTGACAGCCATTTTATTTTAATGAATAGTATATTCCATTTTATTCTAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACAGCCATTTTATTTTAATGAATAGTATATTCCATTTTATTCTAG  239

seq1  TGACTAAATGTATAAATTGGATAGTTACAACCTATTTCTATTTATACCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAAATGTATAAATTGGATAGTTACAACCTATTTCTATTTATACCAC  289

seq1  TTCAACCTGGGATACATCTCACTCATTGTTAGTTGAATATTTTTCACATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCTGGGATACATCTCACTCATTGTTAGTTGAATATTTTTCACATT  339

seq1  TTTGCACAACTCCATAGGTGTCTTTGTGATATGTTAGGTTAATATCCTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACAACTCCATAGGTGTCTTTGTGATATGTTAGGTTAATATCCTTG  389

seq1  AGGACACTATCTTGATGTTACATAGAAGTTGATTATAATGTTTTGTCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACTATCTTGATGTTACATAGAAGTTGATTATAATGTTTTGTCAAA  439

seq1  AACTCTGAAAAGTATAGTCTCATCTCAAACACTCATATGTAATGACCCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGAAAAGTATAGTCTCATCTCAAACACTCATATGTAATGACCCAA  489

seq1  CTCAACAAGAAATCAGTGTTTTCTCTGACAAGGAGCAAGAACAACTGGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAAGAAATCAGTGTTTTCTCTGACAAGGAGCAAGAACAACTGGGT  539

seq1  GCTATAGCAATGTTAAAGGGCTGGGAAAAATGTGACTCTTCCTACTGAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGCAATGTTAAAGGGCTGGGAAAAATGTGACTCTTCCTACTGAAT  589

seq1  TTTATGTTATGAGACCTGAAAACATTTACAGAGAGCTAAGAAAATTCTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTATGAGACCTGAAAACATTTACAGAGAGCTAAGAAAATTCTCT  639

seq1  GTTCTCCAAGGCTTAGCAGTTCAGTAACTCATTCCTGGGCCATTATCACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCAAGGCTTAGCAGTTCAGTAACTCATTCCTGGGCCATTATCACA  689

seq1  TTTTGATACTAGCATCCCAACCCTCTTTGCACCTTCATGTCTTCTGTATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATACTAGCATCCCAACCCTCTTTGCACCTTCATGTCTTCTGTATC  739

seq1  TTAAACAGTTTAAATAGAACCATGGTGTTGAAAGGATGTATTGCGTGCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAGTTTAAATAGAACCATGGTGTTGAAAGGATGTATTGCGTGCTG  789

seq1  GCTCTGAAGAAATGCATTATGATAGTGTACTGAGTTTGAAGCACTTTGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAAGAAATGCATTATGATAGTGTACTGAGTTTGAAGCACTTTGGC  839

seq1  TCAGGATGTGGCTATCTTTTAGTGTCTTCTACTGTGTATATATGTGGGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGTGGCTATCTTTTAGTGTCTTCTACTGTGTATATATGTGGGTA  889

seq1  TACACATGTATGTGGGTGTTCATAGAGATGAGAGGTATTGGAACTAGAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGTATGTGGGTGTTCATAGAGATGAGAGGTATTGGAACTAGAGT  939

seq1  TATAGGCAGTTATGAGCATCTCAAAATGGGTGCTGGGAACTAAGCTCTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCAGTTATGAGCATCTCAAAATGGGTGCTGGGAACTAAGCTCTGG  989

seq1  CTCACTCCAAGAGCAATACATACTCTTAACCATTGAGCTACATCTACAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCCAAGAGCAATACATACTCTTAACCATTGAGCTACATCTACAAC  1039

seq1  CCCTCAATTTCTTCTGTTTGTAAAATAAACATGGCAATACTGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAATTTCTTCTGTTTGTAAAATAAACATGGCAATACTGAATTC  1086

seq1: chr14_86220476_86221031
seq2: B6Ng01-047K16.g_68_610 (reverse)

seq1  TGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCAC  50
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGTTCTTTGAGAAAATCAACAAGATAGACAAACCCTTAGCCAGACTCAC  50

seq1  TAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGG  100
      |||||||||||| ||||||||| ||||||||||||||||||||| |||||
seq2  TAGAGGGCACAGTGACAGCATCATAATTAACAAAATCAGAAATGTAAAGG  100

seq1  GAGACATAACAACAAACACGGAAGAAATCCAAAACACCATCAGATCCTTC  150
      |||||||||||||| |  | ||||||||||||||||||||||||||||||
seq2  GAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTC  150

seq1  TACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGAAAA  200
      |||||||||||||||||||||||||||||||||||||||||||| | | |
seq2  TACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATAG-ACA  199

seq1  AATTTCTAGACAGATACCAGGTACCAAAGTTAAACCAGGATCAATTTAAC  250
       |||||||||||| |||||||||| ||||||||  ||||||||  |||| 
seq2  TATTTCTAGACAGTTACCAGGTACAAAAGTTAAGTCAGGATCAGGTTAAT  249

seq1  GATCTAAACAGTCCCATATCCCCTAAAGAAATATAAGCAGTCATTAATGG  300
      |||||||| ||||| |||||||||||||||||| |||||||||||||| |
seq2  GATCTAAATAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATAG  299

seq1  TCTCCAAATCAAAAAAAAAAAAAAAGCCCAGGACCAGATGGGTTTAGTGC  350
      ||||  || |        ||||||||||||||||||||||||||||||||
seq2  TCTCTGAACC--------AAAAAAAGCCCAGGACCAGATGGGTTTAGTGC  341

seq1  AGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAAC  400
      ||||||||||||||| ||||   ||||||||||||||||||| | |||||
seq2  AGAGTTCTATCAGACTTTCA---AAGATCTAATTCCAGTTCTTCTCAAAC  388

seq1  TATTCCAC-AAAATAGAAGTAGAAGGTACTTTACCCATCTCATTCTATGA  449
      |||||||| |||||||||  | |||||||| ||||||  |||||||||||
seq2  TATTCCACAAAAATAGAAACATAAGGTACTCTACCCAGTTCATTCTATGA  438

seq1  AGCCACAATTTCTCTGATACCTAAAACACAGAAAGATCCAACAAAGATAG  499
      |||||||||  |||||||||||||  |||||||||| |||||||||||||
seq2  AGCCACAATCACTCTGATACCTAAGCCACAGAAAGACCCAACAAAGATAG  488

seq1  AGAACTTCAGACCAATTTCCCTTATGAATATCGATGCAAAAATACTCAAT  549
      ||||||||||||| |||||| |||| ||||| ||| ||||||||||||||
seq2  AGAACTTCAGACC-ATTTCCTTTATAAATATTGAT-CAAAAATACTCAAT  536

seq1  AAAATTC  556
      | |||||
seq2  AGAATTC  543