BAC Information

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BAC

Clone NameB6Ng01-047M17
Chromosome14 (Build37)
Map Location 93,461,632 - 93,634,630
singlet/doubletdoublet
Overlap genePcdh9, LOC668566
Upstream geneEG665377, LOC638252
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047M17.bB6Ng01-047M17.g
ACCDH872555DH872556
length1,1381,089
definitionDH872555|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M17, 5' end.DH872556|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,633,470 - 93,634,630)(93,461,632 - 93,462,734)
sequence
gaattcttattgggcgttcactcagtctcttgaaagtatttgtagggtat
gtggaatttatttttttcagaagcaattgaaacagcttttcaccatactc
aattttgtagttactgtatctccttaataatggataccaggcaattttat
ttggattttcattcaaaccatcacatttcctgctcctaccactcaccatg
tttatataactttgcagtctatgtagcataggctacatagttataaacag
atctgtggtgttttctgaaacaaaaataaatataggacttccttgtattt
tggcacaagcttccattgagtctctggaaattcctgatacaaattggttt
aaaatgcccctattaattattattctgtgactaatatatagaaaactttt
agcataataaacaaaagtttatcatgttatattttttcttcgagtttaat
gaaaaatatggaattaatactagaaaaatgtggttattcttgcacaaaaa
taaggtataaaaatgtacctctatttgcaggtcttagaagagatatcata
tgttaaaatgctcaataaagatacctcagtaatgtgcttgctttgttaaa
tatgctttcctttatcagtttttaattgcacatccagacatttaaatgta
actactctctgtctgtcatctaaaacccacagtaggatgagtagatgttg
ctaagtaacatatgcattgcctcgcagtaaacaatttcatggttagaaca
gttagtacctcctcttttatttttcttatgtttggtcctgacaacggact
tcccctagcaacatttcacatagtaagggttttgatcatgtggagtgtaa
actaagcctgactggatataaaatgttttccaatgtggtaagatcagtct
tgttgtcagtgtcctgaagactcagcacaacactggtctcgacacatttt
cacttactgtacagttctgtgccctcacagaaaggtgcttcttctgacag
tttttataaatgaattctgctttgcagctctgaagaatgtgtgatggtca
taagcaatttcttatcaatctcaagagtgactgtttttgagtactgacag
aagaccatctgcactctggttgcgagactgccgacctc
gaattcttcatatataaagtaatgtagaagtacactaacagagaggagaa
aaacaccagttctgttcctggtcaggacagacttacagcttttaagatct
tgtgagttgaaacagactcggggaagtatgcagtacaatttctcatagta
atgagcaagaagaccacaaaggtgaagctaatgtgaactttctgcatttc
cattccttcactgaacccctgtcttctagataagcaataaccacaaccct
ctggctcatgggctatgtaccttattagtcacttttataaaacaaaaatt
ggttctttttaactagcttttcacatcacagacattcttctggtgttcat
ttgtataacttatctaaagtttaacgagacactcagaataaatttgtaag
caaatccaccatattgctgttagaggtttttttttttttttttttttgct
aacttgtatgcattgctttattctacattaagaaacaaacaaaatagaac
cattcattttgctgtaattttaatcttattgaacatacaattatagttga
gtcaaatagcaggatggcaaagagagggctctatccacatttggagatgt
ttcaaaaagaattttacagcaacatggggctttttcaagttaattctttg
gtttcctttatcctttctatcatagaaaactgggttttctttattcattt
ttgtcagcccttgggtatataattttaatttctctttgaagtagcgtttc
tcaatgcctattaaaatcccattgttccttgagattagccatgtattgac
accctgtcctcctttcaccaccctcttcactgcaccagagggaaaggaag
gaaagatgttgccttcttataagcaaagctgtgccactgtctttttcatt
tagagaccctagggtatttacaacatctgaataaataagagagtaaattt
atgacaacatggtgctatttttaatatttttaaattaatttttagacatg
agtaggtcacttttggaagagtcaattcattttgttaagttctgaaatca
ttctttttattttctttagagttgagctagaaaatctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_93633470_93634630
seq2: B6Ng01-047M17.b_47_1184 (reverse)

seq1  GAGGTCGGCAGTCTCTGCCACAAGA-TGCAGAATTGTGCTC-TCTGTCAG  48
      ||||||||||||||| || || ||| ||||||    || || ||||||||
seq2  GAGGTCGGCAGTCTC-GCAACCAGAGTGCAGA----TGGTCTTCTGTCAG  45

seq1  TCACTCAAAAAACAGTCACCTCTTTGAAGATGGAATAAGAAAACTGCTTT  98
      | |||| ||||||||||| |||||   |||| | ||||| ||| |||  |
seq2  T-ACTC-AAAAACAGTCA-CTCTT--GAGATTG-ATAAG-AAATTGC--T  86

seq1  TATGAACATCACACATTCTTTCAGAGCTTGCAAAAGCAGAATTTCAATTT  148
      ||||| |||||||||||| |||||||| ||| ||||||||| ||||  ||
seq2  TATGACCATCACACATTC-TTCAGAGC-TGC-AAAGCAGAA-TTCA--TT  130

seq1  TATAAAAACTGTCAGAAGAAGCACCTTTCTGTGAGGGCACAGATACTGTT  198
      ||||||||||||||||||||||||||||||||||||||||||| |||| |
seq2  TATAAAAACTGTCAGAAGAAGCACCTTTCTGTGAGGGCACAGA-ACTG-T  178

seq1  ACAGTAAGTGAAAATGTGGTCGAGACCAGTGTTGTGCTGAGTCTTCAGGA  248
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACAGTAAGTGAAAATGT-GTCGAGACCAGTGTTGTGCTGAGTCTTCAGGA  227

seq1  CACTGACAACAAGACTGATCTGTACCACATTGGAAAACATTTTATATCCA  298
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACTGACAACAAGACTGATCT-TACCACATTGGAAAACATTTTATATCCA  276

seq1  GTCAGGCTTAGTTTTACACTCCACATGATC-AAACCCTTACTATGTGAAA  347
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  GTCAGGCTTAG-TTTACACTCCACATGATCAAAACCCTTACTATGTGAAA  325

seq1  TTGTTGCTAGGGGAAGTCCGTTGTCAGGACCAAACATAAGAAAAATAAAA  397
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGTTGCTAGGGGAAGTCCGTTGTCAGGACCAAACATAAGAAAAATAAAA  374

seq1  GAGGAGGTACTAACTGTTCTAACCATGAAATTGTTTACTGCGAGGCAATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGTACTAACTGTTCTAACCATGAAATTGTTTACTGCGAGGCAATG  424

seq1  CATATGTTACTTAGCAACATCTACTCATCCTACTGTGGGTTTTAGATGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTTACTTAGCAACATCTACTCATCCTACTGTGGGTTTTAGATGAC  474

seq1  AGACAGAGAGTAGTTACATTTAAATGTCTGGATGTGCAATTAAAAACTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGAGTAGTTACATTTAAATGTCTGGATGTGCAATTAAAAACTGA  524

seq1  TAAAGGAAAGCATATTTAACAAAGCAAGCACATTACTGAGGTATCTTTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAAGCATATTTAACAAAGCAAGCACATTACTGAGGTATCTTTAT  574

seq1  TGAGCATTTTAACATATGATATCTCTTCTAAGACCTGCAAATAGAGGTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTTTAACATATGATATCTCTTCTAAGACCTGCAAATAGAGGTAC  624

seq1  ATTTTTATACCTTATTTTTGTGCAAGAATAACCACATTTTTCTAGTATTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATACCTTATTTTTGTGCAAGAATAACCACATTTTTCTAGTATTA  674

seq1  ATTCCATATTTTTCATTAAACTCGAAGAAAAAATATAACATGATAAACTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATATTTTTCATTAAACTCGAAGAAAAAATATAACATGATAAACTT  724

seq1  TTGTTTATTATGCTAAAAGTTTTCTATATATTAGTCACAGAATAATAATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATTATGCTAAAAGTTTTCTATATATTAGTCACAGAATAATAATT  774

seq1  AATAGGGGCATTTTAAACCAATTTGTATCAGGAATTTCCAGAGACTCAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGGCATTTTAAACCAATTTGTATCAGGAATTTCCAGAGACTCAAT  824

seq1  GGAAGCTTGTGCCAAAATACAAGGAAGTCCTATATTTATTTTTGTTTCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTTGTGCCAAAATACAAGGAAGTCCTATATTTATTTTTGTTTCAG  874

seq1  AAAACACCACAGATCTGTTTATAACTATGTAGCCTATGCTACATAGACTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCACAGATCTGTTTATAACTATGTAGCCTATGCTACATAGACTG  924

seq1  CAAAGTTATATAAACATGGTGAGTGGTAGGAGCAGGAAATGTGATGGTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTATATAAACATGGTGAGTGGTAGGAGCAGGAAATGTGATGGTTT  974

seq1  GAATGAAAATCCAAATAAAATTGCCTGGTATCCATTATTAAGGAGATACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAATCCAAATAAAATTGCCTGGTATCCATTATTAAGGAGATACA  1024

seq1  GTAACTACAAAATTGAGTATGGTGAAAAGCTGTTTCAATTGCTTCTGAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTACAAAATTGAGTATGGTGAAAAGCTGTTTCAATTGCTTCTGAAA  1074

seq1  AAAATAAATTCCACATACCCTACAAATACTTTCAAGAGACTGAGTGAACG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATTCCACATACCCTACAAATACTTTCAAGAGACTGAGTGAACG  1124

seq1  CCCAATAAGAATTC  1161
      ||||||||||||||
seq2  CCCAATAAGAATTC  1138

seq1: chr14_93461632_93462734
seq2: B6Ng01-047M17.g_68_1156

seq1  GAATTCTTCATATATAAAGTAATGTAGAAGTACACTAACAGAGAGGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATATATAAAGTAATGTAGAAGTACACTAACAGAGAGGAGAA  50

seq1  AAACACCAGTTCTGTTCCTGGTCAGGACAGACTTACAGCTTTTAAGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCAGTTCTGTTCCTGGTCAGGACAGACTTACAGCTTTTAAGATCT  100

seq1  TGTGAGTTGAAACAGACTCGGGGAAGTATGCAGTACAATTTCTCATAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTGAAACAGACTCGGGGAAGTATGCAGTACAATTTCTCATAGTA  150

seq1  ATGAGCAAGAAGACCACAAAGGTGAAGCTAATGTGAACTTTCTGCATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAAGAAGACCACAAAGGTGAAGCTAATGTGAACTTTCTGCATTTC  200

seq1  CATTCCTTCACTGAACCCCTGTCTTCTAGATAAGCAATAACCACAACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTCACTGAACCCCTGTCTTCTAGATAAGCAATAACCACAACCCT  250

seq1  CTGGCTCATGGGCTATGTACCTTATTAGTCACTTTTATAAAACAAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCATGGGCTATGTACCTTATTAGTCACTTTTATAAAACAAAAATT  300

seq1  GGTTCTTTTTAACTAGCTTTTCACATCACAGACATTCTTCTGGTGTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTTTAACTAGCTTTTCACATCACAGACATTCTTCTGGTGTTCAT  350

seq1  TTGTATAACTTATCTAAAGTTTAACGAGACACTCAGAATAAATTTGTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAACTTATCTAAAGTTTAACGAGACACTCAGAATAAATTTGTAAG  400

seq1  CAAATCCACCATATTGCTGTTAGAGGTTTTTTTTTTTTTTTTTTTTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCACCATATTGCTGTTAGAGGTTTTTTTTTTTTTTTTTTTTTGCT  450

seq1  AACTTGTATGCATTGCTTTATTCTACATTAAGAAACAAACAAAATAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTATGCATTGCTTTATTCTACATTAAGAAACAAACAAAATAGAAC  500

seq1  CATTCATTTTGCTGTAATTTTAATCTTATTGAACATACAATTATAGTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTTTGCTGTAATTTTAATCTTATTGAACATACAATTATAGTTGA  550

seq1  GTCAAATAGCAGGATGGCAAAGAGAGGGCTCTATCCACATTTGGAGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATAGCAGGATGGCAAAGAGAGGGCTCTATCCACATTTGGAGATGT  600

seq1  TTCAAAAAGAATTTTACAGCAACATGGGGCTTTTTCAAGTTAATTCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAGAATTTTACAGCAACATGGGGCTTTTTCAAGTTAATTCTTTG  650

seq1  GTTTCCTTTATCCTTTCTATCATAGAAAACT-GGCTTTCTTCATTCATTT  699
      ||||||||||||||||||||||||||||||| || |||||| ||||||||
seq2  GTTTCCTTTATCCTTTCTATCATAGAAAACTGGGTTTTCTTTATTCATTT  700

seq1  TTGTCAGCCCTTGGGTATATAATTTTAA-TTCTCTTTGAAGTAGCGTTTC  748
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTGTCAGCCCTTGGGTATATAATTTTAATTTCTCTTTGAAGTAGCGTTTC  750

seq1  TCAATGCCTATTAAAATCCCATTGTTCCTTGAGATTAGCCATGTATTGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCCTATTAAAATCCCATTGTTCCTTGAGATTAGCCATGTATTGAC  800

seq1  ACCCTGTCCTCC-TTCACCACCCTCTTCACTGCACCAGAGGGGAAAGGAA  847
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  ACCCTGTCCTCCTTTCACCACCCTCTTCACTGCACCAGA-GGGAAAGGAA  849

seq1  GGAAAGATG-TGCCTTCTTAT-AGCAAAGCTGTGCCACTGTCTTTTTCAA  895
      ||||||||| ||||||||||| ||||||||||||||||||||||||||| 
seq2  GGAAAGATGTTGCCTTCTTATAAGCAAAGCTGTGCCACTGTCTTTTTCAT  899

seq1  TTAGAGACCCTAGGGTATTTACAAACATCTGAATAAAATAAGAGAGTAAA  945
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  TTAGAGACCCTAGGGTATTTAC-AACATCTGAAT-AAATAAGAGAGTAAA  947

seq1  TTTTATGACAACATGGTGCTATTTTTAAATATTTTAAATTAATTTTTTAG  995
       |||||||||||||||||||||||||||   ||||||||||| |||||||
seq2  -TTTATGACAACATGGTGCTATTTTTAATATTTTTAAATTAA-TTTTTAG  995

seq1  ACATGAAGTTAAGTTCACTTTGTGAAGAGTCAATTCATGTTGTATAAGTC  1045
      ||||| |||  || |||||||  ||||||||||||||| |||| ||||| 
seq2  ACATG-AGT--AGGTCACTTTTGGAAGAGTCAATTCATTTTGT-TAAGTT  1041

seq1  CTGAAAATCAATTTCTTTTTATTTTTCTTTTAGTAGTTTGAGCCTAGAAA  1095
      ||| ||||||  |||||||||||||   ||||| || ||||| |||||||
seq2  CTG-AAATCA--TTCTTTTTATTTT--CTTTAG-AG-TTGAG-CTAGAAA  1083

seq1  AATTCTGT  1103
      |  |||||
seq2  A--TCTGT  1089