BAC Information

Click to search

BAC

Clone NameB6Ng01-048E02
Chromosome14 (Build37)
Map Location 17,992,105 - 17,992,992
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb, Tpi-rs9
Downstream geneThrb, LOC627608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048E02.bB6Ng01-048E02.g
ACCDH872869DH872870
length8921,130
definitionDH872869|Mus musculus domesticus DNA, BAC clone: B6Ng01-048E02, 5' end.DH872870|Mus musculus domesticus DNA, BAC clone: B6Ng01-048E02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcatttttgttgctttgattatctattgagtcatagtcctggg
agaagtaggaggaaaagggaaagagaagactgagaactggcccagacagg
ctacagatagaaaggatgggaaataactcaaaagcttctctgattcagtt
cttgtccagagatcattgtccttagaaaacagagaagtggctccatctta
aattcaaagctatgggtagattagcacactcagaactacttcagaatggt
attattttgtcatttttatttctttatttcccttaaagaaaataaatgtg
aatttggcagcaaattaagggatcatctttctccttgtgaagctggtgat
ctgaatattatctttgtggggaatttgattggggctgagggagtgatctt
attactgggaccctttggccaatgatctcatgaataagggcatgcattga
cttattttctctttatatccgttggcgagctatcattcattgctattgtg
gaaatttggctaagtaatagttctctagagaaattatgggttctttggtg
tggttagagcttcctttgaatttaagccggccagagacccttccatgggt
taagaactcactatccacccttttctctaacacatggtttacttgtaagg
cttctggcaattccttcttccaagaagttaagaataacataccattattt
tttgaagggacattgatttggagaaacaataagcattatttctttttact
atgaaactcaatatatttcgaatactttgcttggctacataaaaaactgt
cataatgttcttttctggcatcagccagctggagccaaaggctggtggat
gctatctagtcatcatgccctctcacctcccgcctgtcatca
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataaagatacaatttgctaaacacatgaaactcaa
gaaaaatgaagactgaagtgtggacactatgcccctccttagaagtggga
acaaaacacccatggaaggagttacagaaacaaagtatggagctgagatg
aaagatgggaccatgtagagactgccattatccagggatccaccccataa
tcagcttccaaatgctgacaccattgcatacactagcaagattttactga
aaggacccagaatgtagctgtctcttgttgagactatgctggggcctagc
caaaacagaagtggatgctcacagtcagctattggatggatcacaggctc
ccaatggagagctagagaagtactaagagctaaaggatatcatcctatag
tgacactatgaactacagtaccctgagctctgactctagctgcattgtat
caaagatgctagcgcttcttgaagaagtccatggatcctgacttgtgccc
tgtcggaagctagctagggggagtggggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_17992105_17992992
seq2: B6Ng01-048E02.b_47_938 (reverse)

seq1  TGATGACA-GCGGGAGGTGAGAGGGCATGATGACCAGATAGCATCCACCA  49
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  TGATGACAGGCGGGAGGTGAGAGGGCATGATGACTAGATAGCATCCACCA  50

seq1  GCCTTTGGCTCAGCCTGGCTGATGCCAGAAAAAGAACA-TATGACAG-TT  97
      |||||||||||   |||||||||||||| ||||||||| |||||||| ||
seq2  GCCTTTGGCTCCAGCTGGCTGATGCCAG-AAAAGAACATTATGACAGTTT  99

seq1  TTTATGTAGCCCAGCCAAGTATTCGAAATATATTGAGTTTCATAGTAAAA  147
      ||||||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  TTTATGTAGCCAAGCAAAGTATTCGAAATATATTGAGTTTCATAGTAAAA  149

seq1  --GAATTATGCTTATTGTTTCTCCAAATCAATGTCCCTTCAAAAAATAAT  195
         ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAATGCTTATTGTTTCTCCAAATCAATGTCCCTTCAAAAAATAAT  199

seq1  GGTATGTTATTCTTAACTTCTTGGAAGAAGGAATTGCCAGAAGCCTTACA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTTATTCTTAACTTCTTGGAAGAAGGAATTGCCAGAAGCCTTACA  249

seq1  AGTAAACCATGTGTTAGAGAAAAGGGTGGATAGTGAGTTCTTAACCCATG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACCATGTGTTAGAGAAAAGGGTGGATAGTGAGTTCTTAACCCATG  299

seq1  GAAGGGTCTCTGGCCGGCTTAAATTCAAAGGAAGCTCTAACCACACCAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTCTCTGGCCGGCTTAAATTCAAAGGAAGCTCTAACCACACCAAA  349

seq1  GAACCCATAATTTCTCTAGAGAACTATTACTTAGCCAAATTTCCACAATA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCATAATTTCTCTAGAGAACTATTACTTAGCCAAATTTCCACAATA  399

seq1  GCAATGAATGATAGCTCGCCAACGGATATAAAGAGAAAATAAGTCAATGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAATGATAGCTCGCCAACGGATATAAAGAGAAAATAAGTCAATGC  449

seq1  ATGCCCTTATTCATGAGATCATTGGCCAAAGGGTCCCAGTAATAAGATCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTTATTCATGAGATCATTGGCCAAAGGGTCCCAGTAATAAGATCA  499

seq1  CTCCCTCAGCCCCAATCAAATTCCCCACAAAGATAATATTCAGATCACCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCAGCCCCAATCAAATTCCCCACAAAGATAATATTCAGATCACCA  549

seq1  GCTTCACAAGGAGAAAGATGATCCCTTAATTTGCTGCCAAATTCACATTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACAAGGAGAAAGATGATCCCTTAATTTGCTGCCAAATTCACATTT  599

seq1  ATTTTCTTTAAGGGAAATAAAGAAATAAAAATGACAAAATAATACCATTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTAAGGGAAATAAAGAAATAAAAATGACAAAATAATACCATTC  649

seq1  TGAAGTAGTTCTGAGTGTGCTAATCTACCCATAGCTTTGAATTTAAGATG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAGTTCTGAGTGTGCTAATCTACCCATAGCTTTGAATTTAAGATG  699

seq1  GAGCCACTTCTCTGTTTTCTAAGGACAATGATCTCTGGACAAGAACTGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACTTCTCTGTTTTCTAAGGACAATGATCTCTGGACAAGAACTGAA  749

seq1  TCAGAGAAGCTTTTGAGTTATTTCCCATCCTTTCTATCTGTAGCCTGTCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAGCTTTTGAGTTATTTCCCATCCTTTCTATCTGTAGCCTGTCT  799

seq1  GGGCCAGTTCTCAGTCTTCTCTTTCCCTTTTCCTCCTACTTCTCCCAGGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGTTCTCAGTCTTCTCTTTCCCTTTTCCTCCTACTTCTCCCAGGA  849

seq1  CTATGACTCAATAGATAATCAAAGCAACAAAAATGAAGAATTC  888
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACTCAATAGATAATCAAAGCAACAAAAATGAAGAATTC  892