BAC Information

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BAC

Clone NameB6Ng01-048M17
ChromosomeX (Build37)14 (Build37)
Map Location 59,672,532 - 59,673,64134,271,711 - 34,271,871
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039778, Ldoc1, LOC654353, EG627299, LOC666654, LOC385367, LOC671741, 4933402E13Rik
Downstream gene4931400O07Rik, 1700019B21Rik, LOC671878, LOC666695, EG627420
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048M17.bB6Ng01-048M17.g
ACCDH873248DH873249
length1,082808
definitionDH873248|Mus musculus domesticus DNA, BAC clone: B6Ng01-048M17, 5' end.DH873249|Mus musculus domesticus DNA, BAC clone: B6Ng01-048M17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(59,672,532 - 59,673,641)(34,271,711 - 34,271,871)
sequence
gaattcttaatgtgtacttagttttctctgtcaacatatcagcaggcatc
aattgtatgattcttttaatctgaatttccgtgtcaatctatggcagaat
ctgggagtagctattatcatatgagcaaggaagagatgatagtgtgaatc
aagcatattgttaggtaaaaattgattataaatatatgatgaacttttaa
atcaactagtctcatagttccttcacatatgggttacactgaatactaat
acaatgggtaaaatgaaataagccagtaataatcagtgacatatgattca
atctcaaaattccatttgtagtgaacaacacacaaattattctataaact
ttacttacaacatttagtgagttcagttagattttcctccattccctata
tttccatcaaatatattattcccaggagttgatattgagtgcaaacttaa
attatgttcagaccaagcaatttacttttgtttcaaagcttatatagtta
agatatgtattctttgaattatctagatcaatatttatttcagaacttat
atatacatataaatatgtaagtggcccatagcaatatatagctaatatat
atctatagtattcaacataaatgatacttttctttacaaacttaaaaaat
gattcctcaagttttctattcattttattttccaaatgcattacatatta
ctgaggtgaaagtattatttcacaaaaaaaggtaaaatctctatttgctt
cattcaatcacgcaatagtaaatacaagggacaaatgtcctataaatgat
aagagaaatgaatatttgcatgccaatagagataataaattacacatacc
taatatcatttcccgagtagagaggctagtgtttgcagccatagatagat
tgacaaagagctgaaattctttgaatatcagtcttctactgagtagcttc
tctggtagagttatttgcagaactaagtaatctcatgaaatctacagatt
tcaatgattatttgataatgcacatcagatggttagaagtctaatgtgct
agcaagatctcataaataatctgcttgatatt
gaattcagtctggcggttcctcagaaaattggacatagtactacaggagg
atccagcaatacctctcctgggcatatatccagaagatgccccaactggt
aagaaggacacatgctccactatgttcatagcagccttatttataatagc
cagaagctggaaagagcatgagtgtttctgatacaagccagagacctgca
acagtgagtctatggcagtgaccctatctgagactcctagcagctcaaga
gattgaagtggccaactcctgtagccagggggacttcagtgcagagagtt
gggagatcaacccacccataaaatctttgacccatagtttgtcttgtgta
taagttatgcagagataaacatctagcagaaattgaggggatgttgtgct
gatttgaatatgctttgcccagggactggcattataagtaagtgtggctg
tgttggaggaagtgtgtcactgttggggtgggctttgagcctcctttgct
caggctcctcctagtgtggaagagaccctccttttctttgccttccaaag
atagtctcctcctggctacactaaaattaagatgtagaaccctcagcttc
ttctacagcaccctgtctgcctggatatttgccatgcttcctgtcatgat
gataatggactgaaccttcagaatctgtaggccatgtattctatgcaatg
attcctattctagcttgttaaaaatttacttatccaggcactgtggcact
tacccacacaatcagtacgtatctgagaaacaggagaaattccttttttt
tcccattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_59672532_59673641
seq2: B6Ng01-048M17.b_45_1126

seq1  GAATTCTTAATGTGTACTTAGTTTTCTCTGTCAACATATCAGCAGGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATGTGTACTTAGTTTTCTCTGTCAACATATCAGCAGGCATC  50

seq1  AATTGTATGATTCTTTTAATCTGAATTTCCGTGTCAATCTATGGCAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTATGATTCTTTTAATCTGAATTTCCGTGTCAATCTATGGCAGAAT  100

seq1  CTGGGAGTAGCTATTATCATATGAGCAAGGAAGAGATGATAGTGTGAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTAGCTATTATCATATGAGCAAGGAAGAGATGATAGTGTGAATC  150

seq1  AAGCATATTGTTAGGTAAAAATTGATTATAAATATATGATGAACTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATTGTTAGGTAAAAATTGATTATAAATATATGATGAACTTTTAA  200

seq1  ATCAACTAGTCTCATAGTTCCTTCACATATGGGTTACACTGAATACTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTAGTCTCATAGTTCCTTCACATATGGGTTACACTGAATACTAAT  250

seq1  ACAATGGGTAAAATGAAATAAGCCAGTAATAATCAGTGACATATGATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGGTAAAATGAAATAAGCCAGTAATAATCAGTGACATATGATTCA  300

seq1  ATCTCAAAATTCCATTTGTAGTGAACAACACACAAATTATTCTATAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAAATTCCATTTGTAGTGAACAACACACAAATTATTCTATAAACT  350

seq1  TTACTTACAACATTTAGTGAGTTCAGTTAGATTTTCCTCCATTCCCTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTACAACATTTAGTGAGTTCAGTTAGATTTTCCTCCATTCCCTATA  400

seq1  TTTCCATCAAATATATTATTCCCAGGAGTTGATATTGAGTGCAAACTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCAAATATATTATTCCCAGGAGTTGATATTGAGTGCAAACTTAA  450

seq1  ATTATGTTCAGACCAAGCAATTTACTTTTGTTTCAAAGCTTATATAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTCAGACCAAGCAATTTACTTTTGTTTCAAAGCTTATATAGTTA  500

seq1  AGATATGTATTCTTTGAATTATCTAGATCAATATTTATTTCAGAACTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGTATTCTTTGAATTATCTAGATCAATATTTATTTCAGAACTTAT  550

seq1  ATATACATATAAATATGTAAGTGGCCCATAGCAATATATAGCTAATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATATAAATATGTAAGTGGCCCATAGCAATATATAGCTAATATAT  600

seq1  ATCTATAGTATTCAACATAAATGATACTTTTCTTTACAAACTTAAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAGTATTCAACATAAATGATACTTTTCTTTACAAACTTAAAAAAT  650

seq1  GATTCCTCAAGTTTTCTATTCATTTTATTTTCCAAATGCATTACATATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCAAGTTTTCTATTCATTTTATTTTCCAAATGCATTACATATTA  700

seq1  CTGAGGTGAAAGTATTATTTCACAAAAAAAGGTAAAATCTCTATTTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTGAAAGTATTATTTCACAAAAAAAGGTAAAATCTCTATTTGCTT  750

seq1  CATTCAATCAGGCAATAGTAAATACAAGGGACAAATGTCCTATAAATGAT  800
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CATTCAATCACGCAATAGTAAATACAAGGGACAAATGTCCTATAAATGAT  800

seq1  AAGAGAAATGAATATTTGCATGCCAATAGAGATAATAAATTACACATACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAATGAATATTTGCATGCCAATAGAGATAATAAATTACACATACC  850

seq1  TAATATCATTTCCCGAGTAGAGAGGCTAGGTGTTTTGCAGCCATTAAGAT  900
      |||||||||||||||||||||||||||| ||| |||||||||||  ||||
seq2  TAATATCATTTCCCGAGTAGAGAGGCTA-GTG-TTTGCAGCCAT--AGAT  896

seq1  AGGATTGACAAAGAGCCTGAAATTCTTTGAATATCAGTCTTCTACTGAGT  950
      | ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  A-GATTGACAAAGAG-CTGAAATTCTTTGAATATCAGTCTTCTACTGAGT  944

seq1  AGCTTCTCTGGTAAGAGTTATTTGCAGAAACTAAGGTAATCCTCATGAAA  1000
      |||||||||||| |||||||||||||| |||||| ||||| |||||||||
seq2  AGCTTCTCTGGT-AGAGTTATTTGCAG-AACTAA-GTAAT-CTCATGAAA  990

seq1  TCCTACAGGATTTAAAAAATGATTATTATAAAATACATGCACATTCAAGA  1050
      | ||||| |||||    ||||||||||  | |    ||||||||   |||
seq2  T-CTACA-GATTT---CAATGATTATTTGATA----ATGCACAT--CAGA  1029

seq1  GTGGTTTAAGAGTCTAATGTGCTAAGCCAGAGATCTCATTAAAATAATCT  1100
       ||| |||  ||||||||||||| |||   |||||||||  |||||||| 
seq2  -TGG-TTAGAAGTCTAATGTGCT-AGC--AAGATCTCAT--AAATAATC-  1071

seq1  TGCTTG-TATT  1110
      |||||| ||||
seq2  TGCTTGATATT  1082

seq1: chr14_34271711_34271871
seq2: B6Ng01-048M17.g_72_232 (reverse)

seq1  TCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGA  50

seq1  GCATGTGTCCTTCTTACCAGTTGGGGCATCTTCTGGATATATGCCCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTCCTTCTTACCAGTTGGGGCATCTTCTGGATATATGCCCAGGA  100

seq1  GAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAAC  150
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGGTATTGCTGGATCCTCCTGTAGTACTATGTCCAATTTTCTGAGGAAC  150

seq1  CGCCAGACTGA  161
      |||||||||||
seq2  CGCCAGACTGA  161