BAC Information

Click to search

BAC

Clone NameB6Ng01-048N09
Chromosome14 (Build37)
Map Location 94,143,235 - 94,258,418
singlet/doubletdoublet
Overlap genePcdh9
Upstream geneLOC668566
Downstream geneLOC100043356, LOC100043783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048N09.bB6Ng01-048N09.g
ACCDH873276DH873277
length1,084485
definitionDH873276|Mus musculus domesticus DNA, BAC clone: B6Ng01-048N09, 5' end.DH873277|Mus musculus domesticus DNA, BAC clone: B6Ng01-048N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,257,308 - 94,258,418)(94,143,235 - 94,143,725)
sequence
gaattctttttgacagataattgttattttacatttatgtttaactatat
agaacaaattagaatttacagattttcaattaaatttttgataaccttat
acatagtggtaagatacataaaaaggtcaaatataatatttaatttactt
atcctttttgtgttatagcaagatagtgtaaaatataaattatttttact
ttcatgtacaaatcctccatgtgacattcaatgaaatgtttataccttag
acatcctccaagtcaccaagcagatcttatttttagcatttgtaatgtaa
ataggaatttttaaccatattagtctacaaactaaaatattactttactg
atttactatatttctaaagtagtttgtaaaagcactataggacacctggt
ttatttttcagtatgatacatttgggttattagttgatgttttatataaa
actttaagaacatggaattcattcattcttttatatgtaatagacattaa
ttgctaatagcaggcagttatttacttagttattaaatgtatgcatgtaa
tattacacctcttagcaattaattaatcattttatacgtgttcaatagcc
tttagcatggaagtggttatcagtgtatcataaatatgtttgctgtttta
actaattctctgtactatcagaaacttcagtttgtattataaatattttt
gagtaacagagaaagcgatagggctagatcacaggaaaaaaaaatctttt
tttttttctttttagcgtgacccctgtcaattctgagactgaaaggcaca
tttttgttttccaacccactttttaataccattttaattacatgcaagta
ttttgggcaagcagtacataaggaacaaagcagctgtacgataggaacta
ctacaaagcacagtcttgtgatactactgatagtgtacaagggcttacgt
aatgactgacatacttgagcccagttttgtagcattttcttatattgaaa
tcattttaccagagaatatttctgtcattataaactttctgtgcatgtga
ctttataatacccaattagtattgattctatact
aaaaggctcaacaagctgtagtgccaagtgaggatgcaacagtcccactt
gagagaaagaagaaagcaatcaaaagtgtgtctgaaagaactacagggat
tgtagcgctcacaaaaaggaacctatcatgactgccctccgaaagaccca
ataagcagctgaaggagtcagatgcaaatatttccacccatccaatggac
agaagcagctgacccttgttgttgatttagggaaggctgaaagaagctga
ggagaatggtgatcctgtaggagaaccagcagtctcaattgatctggacc
cctgagatctctcaaacactggaccaccagaaagcatacaccagctgata
tgaggcccccaacacacatacagtagaggatttccaggtctttgttcatt
cagatatgatgtctctaaccctcacgagactggaggccccagagagttta
gaggtcaggtgaggtgggggtgggggtatccatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94257308_94258418
seq2: B6Ng01-048N09.b_45_1128 (reverse)

seq1  AGTATTAAGAATCAAATAACATAATTTGGGTATTATAAAGGTTCACATGC  50
      |||||  |||||| ||||   ||| |||||||||||||||  ||||||| 
seq2  AGTAT--AGAATC-AATA--CTAA-TTGGGTATTATAAAG--TCACATG-  41

seq1  CACAGGAAAGTTTTAATAAATTGAACAGAAATATTCTCTGTTAAAATGAA  100
      |||| ||||||||  ||||  || |||||||||||||||| |||||||| 
seq2  CACA-GAAAGTTT--ATAA--TG-ACAGAAATATTCTCTGGTAAAATGA-  84

seq1  TTTCCAATATAAGAAAATGCTTACAAAACTGGGCTCAAGTATGTCAGTCA  150
       || |||||||||||||||| |||||||||||||||||||||||||||||
seq2  -TTTCAATATAAGAAAATGC-TACAAAACTGGGCTCAAGTATGTCAGTCA  132

seq1  TTACGGTAAGCCCTTTGTAACAACTATCAGTAGTAATCACAAGACTTGTG  200
      |||| |||||||| |||||   |||||||||||| |||||||||| ||| 
seq2  TTAC-GTAAGCCC-TTGTA--CACTATCAGTAGT-ATCACAAGAC-TGT-  175

seq1  GCTTTGTTAGTAGTTCCTTATCGTACAGCTGCTTTGTTCCTTATTGTACT  250
      |||||| |||||||||| ||||||||||||||||||||||||| ||||||
seq2  GCTTTG-TAGTAGTTCC-TATCGTACAGCTGCTTTGTTCCTTA-TGTACT  222

seq1  GCTTGCCCAAAATACTTGCATGTAATTAAAATGGTATTAAAAAGTGGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCCAAAATACTTGCATGTAATTAAAATGGTATTAAAAAGTGGGTT  272

seq1  GGAAAACAAAAATGTGCC-TTCAGTCTCAGAATTGACAGGGGTCACGCTA  349
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGAAAACAAAAATGTGCCTTTCAGTCTCAGAATTGACAGGGGTCACGCTA  322

seq1  AAAAGAAAAAAAAAAAGATTTTTTTTTCCTGTGATCTAGCCCTATCGCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAAAAAAAGATTTTTTTTTCCTGTGATCTAGCCCTATCGCTT  372

seq1  TCTCTGTTACTCAAAAATATTTATAATACAAACTGAAGTTTCTGATAGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTACTCAAAAATATTTATAATACAAACTGAAGTTTCTGATAGTA  422

seq1  CAGAGAATTAGTTAAAACAGCAAACATATTTATGATACACTGATAACCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAATTAGTTAAAACAGCAAACATATTTATGATACACTGATAACCAC  472

seq1  TTCCATGCTAAAGGCTATTGAACACGTATAAAATGATTAATTAATTGCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGCTAAAGGCTATTGAACACGTATAAAATGATTAATTAATTGCTA  522

seq1  AGAGGTGTAATATTACATGCATACATTTAATAACTAAGTAAATAACTGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGTAATATTACATGCATACATTTAATAACTAAGTAAATAACTGCC  572

seq1  TGCTATTAGCAATTAATGTCTATTACATATAAAAGAATGAATGAATTCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTAGCAATTAATGTCTATTACATATAAAAGAATGAATGAATTCCA  622

seq1  TGTTCTTAAAGTTTTATATAAAACATCAACTAATAACCCAAATGTATCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAAAGTTTTATATAAAACATCAACTAATAACCCAAATGTATCAT  672

seq1  ACTGAAAAATAAACCAGGTGTCCTATAGTGCTTTTACAAACTACTTTAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAATAAACCAGGTGTCCTATAGTGCTTTTACAAACTACTTTAGA  722

seq1  AATATAGTAAATCAGTAAAGTAATATTTTAGTTTGTAGACTAATATGGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGTAAATCAGTAAAGTAATATTTTAGTTTGTAGACTAATATGGTT  772

seq1  AAAAATTCCTATTTACATTACAAATGCTAAAAATAAGATCTGCTTGGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCCTATTTACATTACAAATGCTAAAAATAAGATCTGCTTGGTGA  822

seq1  CTTGGAGGATGTCTAAGGTATAAACATTTCATTGAATGTCACATGGAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGGATGTCTAAGGTATAAACATTTCATTGAATGTCACATGGAGGA  872

seq1  TTTGTACATGAAAGTAAAAATAATTTATATTTTACACTATCTTGCTATAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACATGAAAGTAAAAATAATTTATATTTTACACTATCTTGCTATAA  922

seq1  CACAAAAAGGATAAGTAAATTAAATATTATATTTGACCTTTTTATGTATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAGGATAAGTAAATTAAATATTATATTTGACCTTTTTATGTATC  972

seq1  TTACCACTATGTATAAGGTTATCAAAAATTTAATTGAAAATCTGTAAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACTATGTATAAGGTTATCAAAAATTTAATTGAAAATCTGTAAATT  1022

seq1  CTAATTTGTTCTATATAGTTAAACATAAATGTAAAATAACAATTATCTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTGTTCTATATAGTTAAACATAAATGTAAAATAACAATTATCTGT  1072

seq1  CAAAAAGAATTC  1111
      ||||||||||||
seq2  CAAAAAGAATTC  1084

seq1: chr14_94143235_94143725
seq2: B6Ng01-048N09.g_69_559

seq1  GAATTCAAAAGGCTCAACAAGCTGTAGTGCCAAGTGAGGATGCAACAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGGCTCAACAAGCTGTAGTGCCAAGTGAGGATGCAACAGTC  50

seq1  CCACTTGAGAGAAAGAAGAAAGCAATCAAAAGTGTGTCTGAAAGAACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGAGAGAAAGAAGAAAGCAATCAAAAGTGTGTCTGAAAGAACTAC  100

seq1  AGGGATTGTAGCGCTCACAAAAAGGAACCTATCATGACTGCCCTCCGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTGTAGCGCTCACAAAAAGGAACCTATCATGACTGCCCTCCGAAA  150

seq1  GACCCAATAAGCAGCTGAAGGAGTCAGATGCAAATATTTCCACCCATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAATAAGCAGCTGAAGGAGTCAGATGCAAATATTTCCACCCATCCA  200

seq1  ATGGACAGAAGCAGCTGACCCTTGTTGTTGATTTAGGGAAGGCTGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAGAAGCAGCTGACCCTTGTTGTTGATTTAGGGAAGGCTGAAAGA  250

seq1  AGCTGAGGAGAATGGTGATCCTGTAGGAGAACCAGCAGTCTCAATTGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGAGAATGGTGATCCTGTAGGAGAACCAGCAGTCTCAATTGATC  300

seq1  TGGACCCCTGAGATCTCTCAAACACTGGACCACCAGAAAGCATACACCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCCTGAGATCTCTCAAACACTGGACCACCAGAAAGCATACACCAG  350

seq1  CTGATATGAGGCCCCCAACACACATACAGTAGAGGATTTCCAGGTCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATGAGGCCCCCAACACACATACAGTAGAGGATTTCCAGGTCTTTG  400

seq1  TTCATTCAGATATGATGTCTCTAACCCTCACGAGACTGGAGGCCCCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCAGATATGATGTCTCTAACCCTCACGAGACTGGAGGCCCCAGAG  450

seq1  AGTTTAGAGGTCAGGTGAGGTGGGGGTGGGGGTATCCATGT  491
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGAGGTCAGGTGAGGTGGGGGTGGGGGTATCCATGT  491