BAC Information

Click to search

BAC

Clone NameB6Ng01-048P04
Chromosome14 (Build37)
Map Location 17,246,135 - 17,373,891
singlet/doubletdoublet
Overlap geneTop2b, Rarb
Upstream geneLrrc3b, LOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1
Downstream geneTpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048P04.bB6Ng01-048P04.g
ACCDH873355DH873356
length1,069627
definitionDH873355|Mus musculus domesticus DNA, BAC clone: B6Ng01-048P04, 5' end.DH873356|Mus musculus domesticus DNA, BAC clone: B6Ng01-048P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,246,135 - 17,247,226)(17,373,261 - 17,373,891)
sequence
gaattctttgatttacggttaagttattatggtttacggaaggaatggct
tgtaggaatgctgggagcagaatctacaaagcttaataatcaagcccgtt
tcattttagagaagatacaggggaaaattactataggtaaggcataacca
ttaaagatttgaacattagttaaaatggaaaaaaatctttattaatagaa
gacatttttttatcagtagaatataagcaaatacaaattgatctcttttc
ttgatcctaattttatttttccctcacatagagaataggtcaaagaaaga
tttgattcaaatgttagtccagagaggttatgaatctgacccagtgaaag
cgtggaaagaagcacaagaaaaggtaatcacctgcagaaagcagacactc
agagaagctctgaaaccaaacaatccccaccccaaagtctgaatttagaa
cggataaaggcgctaagctgtttggtgactgaaggcttctgctaacccac
agagcagacacagtttaggagttcacagtgcatacctaccacaaagcacc
catctccaccagggcttttagaaatggctccatgctgagaatgtggctca
gtgtccttgcaagagtctgccatgaagaggtggtttatgtaaagtacatg
catactctttgagagacagactggtggccctcaaaatcattccattgtcc
agtctgtgatgacagtgtggcatctgcttggtctagttgtgggtggggtc
cggaagatgagagacaaacgtgctttgtcgtcactaacaccaagcatgtg
ctctgcctgtgtttaaacttttggtccgaaatttaaacactataattaag
taattaagtggtccatttagacaatacctgtatttattcatgaatggaaa
aatgaaagcttaggagtccctagagttaatttctaggatttgtgatgaaa
aaaggcattttaaaaggcagtacaacatagagatgagactttttatagag
atgagttaaaaacagcattattaatattagatactaaatagatgtaaccc
acacacgttaatgatagca
gaattcctgatgtgagagctattatcctgtccattttaacgccccacaca
ccccaatgagcgcttacaaacctggttcaaatagaccaggatgcactggt
ttttttaattaccaattcttgattttccgatttaaagcctagagtcatct
gtccacagagcagttgctttctcagaattcgtacagaacatcatgtggaa
ggcacagtgactctaaagattaagaaactacccaagagacattaaaaagt
gtcttgtaggctagagagaccactcagcacttagaacttgattctcttgt
agaaggccaggcttctgacattaaactgtaatacagaacaattgtgataa
aaactgcatggtactggtagagtgacagacaggtagatcaatggaataga
attgaagacccagaaatgaatccacgcacctatggtcacttgatctttga
caagtgagctaaaaccatccagtggaaaagagacaacattttcaacaatg
gtgctggcacaactggcagttatcatgtagaagaatgcaaattgatccat
tcttatctcttgtacaagctcaaggctaagtggatcaaagacctccacat
aaaaccagagacactgaaattatagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_17246135_17247226
seq2: B6Ng01-048P04.b_48_1116

seq1  GAATTCTTTGATTTACGGTTAAGTTATTATGGTTTACGGAAGGAATGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGATTTACGGTTAAGTTATTATGGTTTACGGAAGGAATGGCT  50

seq1  TGTAGGAATGCTGGGAGCAGAATCTACAAAGCTTAATAATCAAGCCCGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAATGCTGGGAGCAGAATCTACAAAGCTTAATAATCAAGCCCGTT  100

seq1  TCATTTTAGAGAAGATACAGGGGAAAATTACTATAGGTAAGGCATAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAGAGAAGATACAGGGGAAAATTACTATAGGTAAGGCATAACCA  150

seq1  TTAAAGATTTGAACATTAGTTAAAATGGAAAAAAATCTTTATTAATAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATTTGAACATTAGTTAAAATGGAAAAAAATCTTTATTAATAGAA  200

seq1  GACATTTTTTTATCAGTAGAATATAAGCAAATACAAATTGATCTCTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTTTTATCAGTAGAATATAAGCAAATACAAATTGATCTCTTTTC  250

seq1  TTGATCCTAATTTTATTTTTCCCTCACATAGAGAATAGGTCAAAGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCTAATTTTATTTTTCCCTCACATAGAGAATAGGTCAAAGAAAGA  300

seq1  TTTGATTCAAATGTTAGTCCAGAGAGGTTATGAATCTGACCCAGTGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCAAATGTTAGTCCAGAGAGGTTATGAATCTGACCCAGTGAAAG  350

seq1  CGTGGAAAGAAGCACAAGAAAAGGTAATCACCTGCAGAAAGCAGACACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAAAGAAGCACAAGAAAAGGTAATCACCTGCAGAAAGCAGACACTC  400

seq1  AGAGAAGCTCTGAAACCAAACAATCCCCACCCCAAAGTCTGAATTTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCTCTGAAACCAAACAATCCCCACCCCAAAGTCTGAATTTAGAA  450

seq1  CGGATAAAGGCGCTAAGCTGTTTGGTGACTGAAGGCTTCTGCTAACCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATAAAGGCGCTAAGCTGTTTGGTGACTGAAGGCTTCTGCTAACCCAC  500

seq1  AGAGCAGACACAGTTTAGGAGTTCACAGTGCATACCTACCACAAAGCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGACACAGTTTAGGAGTTCACAGTGCATACCTACCACAAAGCACC  550

seq1  CATCTCCACCAGGGCTTTTAGAAATGGCTCCATGCTGAGAATGTGGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCACCAGGGCTTTTAGAAATGGCTCCATGCTGAGAATGTGGCTCA  600

seq1  GTGTCCTTGCAAGAGTCTGCCATGAAGAGGTGGTTTATGTAAAGTACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTGCAAGAGTCTGCCATGAAGAGGTGGTTTATGTAAAGTACATG  650

seq1  CATACTCTTTGAGAGACAGACTGGTGGCCCTCAAAATCATTCCATTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCTTTGAGAGACAGACTGGTGGCCCTCAAAATCATTCCATTGTCC  700

seq1  AGTCTGTGATGACAGTGTGGCATCTGCTTGGTCTAGTTGTGGGTGGGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTGATGACAGTGTGGCATCTGCTTGGTCTAGTTGTGGGTGGGGTC  750

seq1  CGGAAGATGAGAGACAAACGTGCTTTGTCGTCACTAACACCAAGCATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGATGAGAGACAAACGTGCTTTGTCGTCACTAACACCAAGCATGTG  800

seq1  CTCTGCCTGTGTTTAGACTTTTGGTCCGAAATTTAAACACTATAATTAAG  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTGTGTTTAAACTTTTGGTCCGAAATTTAAACACTATAATTAAG  850

seq1  TAATTAAGTTGTCCATTTTAGACAATACTTGTATTTATTCAATGAATGAA  900
      ||||||||| ||||| |||||||||||| ||||||||||| ||||||| |
seq2  TAATTAAGTGGTCCA-TTTAGACAATACCTGTATTTATTC-ATGAATGGA  898

seq1  ATATTGAAAGCTTAAGAGTTCCCTAGAGTTAATTTCTTAGTATTTGTGAT  950
      | | |||||||||| ||| ||||||||||||||||| ||| |||||||||
seq2  AAAATGAAAGCTTAGGAG-TCCCTAGAGTTAATTTC-TAGGATTTGTGAT  946

seq1  GATAAAAAGGCAATTTTAAAAGGCAGTACAACATAGAGATTGAGAACTTT  1000
      || |||||||| ||||||||||||||||||||||||||| |||| |||||
seq2  GA-AAAAAGGC-ATTTTAAAAGGCAGTACAACATAGAGA-TGAG-ACTTT  992

seq1  TTTATATAGAGATTGAGTTAAAAAACAGCAATAATTAATATTTTTAGATA  1050
      |   |||||||| |||||| ||||||||| || |||||||   |||||||
seq2  T---TATAGAGA-TGAGTT-AAAAACAGC-ATTATTAATA---TTAGATA  1033

seq1  CTAAAATAGATTTGTATACACACACACATATATATGATAGCA  1092
      || |||||||  |||| || ||||||| | || |||||||||
seq2  CT-AAATAGA--TGTA-ACCCACACACGT-TA-ATGATAGCA  1069

seq1: chr14_17373261_17373891
seq2: B6Ng01-048P04.g_70_696 (reverse)

seq1  CTCTATTAATTTCAGTGTCTCTGGTTTTATGTGGAGGTCTTTGATCCACT  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTA-TAATTTCAGTGTCTCTGGTTTTATGTGGAGGTCTTTGATCCACT  49

seq1  TAGCCTTGAGCTTTGTACAAGGAGATAAGAATGGATCAATTTGCATTCTT  100
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  TAGCCTTGAGC-TTGTACAA-GAGATAAGAATGGATCAATTTGCATTCTT  97

seq1  CTACATGATAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGTTGTC  150
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTACATGATAACTGCCAGTTGTGCCAGCACCA-TTGTTGAAAATGTTGTC  146

seq1  TCTTTTCCACTGGATGGTTTTAGCTCACTTGTCAAAGATCAAGTGACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCACTGGATGGTTTTAGCTCACTTGTCAAAGATCAAGTGACCAT  196

seq1  AGGTGCGTGGATTCATTTCTGGGTCTTCAATTCTATTCCATTGATCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCGTGGATTCATTTCTGGGTCTTCAATTCTATTCCATTGATCTACC  246

seq1  TGTCTGTCACTCTACCAGTACCATGCAGTTTTTATCACAATTGTTCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCACTCTACCAGTACCATGCAGTTTTTATCACAATTGTTCTGTA  296

seq1  TTACAGTTTAATGTCAGAAGCCTGGCCTTCTACAAGAGAATCAAGTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTTAATGTCAGAAGCCTGGCCTTCTACAAGAGAATCAAGTTCTA  346

seq1  AGTGCTGAGTGGTCTCTCTAGCCTACAAGACACTTTTTAATGTCTCTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGAGTGGTCTCTCTAGCCTACAAGACACTTTTTAATGTCTCTTGG  396

seq1  GTAGTTTCTTAATCTTTAGAGTCACTGTGCCTTCCACATGATGTTCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTCTTAATCTTTAGAGTCACTGTGCCTTCCACATGATGTTCTGTA  446

seq1  CGAATTCTGAGAAAGCAACTGCTCTGTGGACAGATGACTCTAGGCTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTCTGAGAAAGCAACTGCTCTGTGGACAGATGACTCTAGGCTTTAA  496

seq1  ATCGGAAAATCAAGAATTGGTAATTAAAAAAACCAGTGCATCCTGGTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGAAAATCAAGAATTGGTAATTAAAAAAACCAGTGCATCCTGGTCTA  546

seq1  TTTGAACCAGGTTTGTAAGCGCTCATTGGGGTGTGTGGGGCGTTAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACCAGGTTTGTAAGCGCTCATTGGGGTGTGTGGGGCGTTAAAATG  596

seq1  GACAGGATAATAGCTCTCACATCAGGAATTC  631
      |||||||||||||||||||||||||||||||
seq2  GACAGGATAATAGCTCTCACATCAGGAATTC  627