BAC Information

Click to search

BAC

Clone NameB6Ng01-049D22
Chromosome14 (Build37)
Map Location 93,219,107 - 93,347,365
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665377, LOC638252
Downstream genePcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049D22.bB6Ng01-049D22.g
ACCDH873563DH873564
length1,1391,074
definitionDH873563|Mus musculus domesticus DNA, BAC clone: B6Ng01-049D22, 5' end.DH873564|Mus musculus domesticus DNA, BAC clone: B6Ng01-049D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,219,107 - 93,220,265)(93,346,278 - 93,347,365)
sequence
gaattcagctgctgtttggctttttctccttcccatttaacggaaagggt
tcttaaatcttctccctagtggagtttccttacacctgctgtttcactgg
taaaagcaagcaacgtcgctacttgtacatacttaggccagttctggata
agtggcgcaatgttcggaaactattctgagacagattatgaataaccaaa
cttttctcgaggtatttggttatgtgttaagctttggtgagtgaattgca
ttgaagtacaaacttggtttcatattccctcttactgctttccctgacat
agtaggagcagcttgagtgacccattgacctgtcagagaaactcccctct
cctgaaaagcctcagtagcagctagcttactcagagtacgaagggggata
aggatgaaggcctgaccacaaacaccaggacagaagcagaggcattgtgc
tgtgactaatcctgtacttgatctgaaatgtccttgatatagtgacctct
gaacaaaatagtggcttcttcagcattttcccagctgccatcatgactta
ttttacagagctcatgcagatctggaggctctggtttaaccatgatgctt
ggagcacactcgtcccagcctcagaacctccttaactggaatggctgcct
aagaatacgtgccttctgcttttaccttgacatgggaaactcatgacagc
cagggtatttccaagaaaaacttcaacaactccaaatatctgtcacaaaa
ttctggataaatttcagatggtcacacctacagatattggaccagatgca
ctaaagtctttaaccatgcagagaagagcactttaatagtccatgatagc
tggggcaggtaggtcccatacctttacagacaggcaagcctaagcagaaa
ctatggtaccaaaaggaaagccgttgtaagcagtctctctctctgtcctt
ggagcagtagaaaacttccttccagctcatgacccactgctgctgtagta
tctcccagtttcatgcatgcttataaatattaattggcactgttctttta
ttaaaaccatagaagtgcatctctttggaataaaattatggaaacaatgc
aggagatacaccggaataaacatgcttagtttctatacc
gaattctcacctgaggaataccaaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaaaaaaatacctggggtagattccacaagaattgatcacctct
ctttatagaaagttgtgcacaaaggattaatttcaccttcctgaactcca
cttcatttattcccctgatcaatttctgtccaggctttaatgttttacaa
agtttcacagagtagcatttgagtttttatctgttttcactctagaccat
ctggcttagtatgaatattttcttgtttgtttctaggtaaggcaggtggg
atccatggtgatgggttacttgaaaatgcagaaacatttaagacaaatac
atcatcaaaagtccacttcaacatgggtgacatctggaacacactgtaca
acttgttagcatctcaacaggttcaagctgcttttccagctagctcagtt
ggtccaatcatctggctatctggggctggtcctcttctaggtaaatcagc
tgatcactgcatctgtcagacagcagcttggcttctctgagtgttcttca
acagttcttactgattatgtatgcttggagagagatgatcttagtgaatc
ctgtcaccttcagggatgtctggaagctattgagctgttatccccgaact
taaccagcttccctataaaatagaatgtgcagtaaaacggatttcaatca
cctcctcccccccccccgaaatattgtgctttactgagatttcctcaaag
atggattttttaatctagagggaattgctatacaactcagagacaaaaat
ctgaatgcacctatttaaaaaatttgaagaataataatactaatatgtct
atggctgcctatcatccacataaatactgatcccatgtttattgggatgc
ttctacataaaaataatctggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_93219107_93220265
seq2: B6Ng01-049D22.b_41_1179

seq1  GAATTCAGCTGCTGTTTGGCTTTTTCTCCTTCCCATTTAACGGAAAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGCTGTTTGGCTTTTTCTCCTTCCCATTTAACGGAAAGGGT  50

seq1  TCTTAAATCTTCTCCCTAGTGGAGTTTCCTTACACCTGCTGTTTCACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATCTTCTCCCTAGTGGAGTTTCCTTACACCTGCTGTTTCACTGG  100

seq1  TAAAAGCAAGCAACGTCGCTACTTGTACATACTTAGGCCAGTTCTGGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCAAGCAACGTCGCTACTTGTACATACTTAGGCCAGTTCTGGATA  150

seq1  AGTGGCGCAATGTTCGGAAACTATTCTGAGACAGATTATGAATAACCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCGCAATGTTCGGAAACTATTCTGAGACAGATTATGAATAACCAAA  200

seq1  CTTTTCTCGAGGTATTTGGTTATGTGTTAAGCTTTGGTGAGTGAATTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCGAGGTATTTGGTTATGTGTTAAGCTTTGGTGAGTGAATTGCA  250

seq1  TTGAAGTACAAACTTGGTTTCATATTCCCTCTTACTGCTTTCCCTGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTACAAACTTGGTTTCATATTCCCTCTTACTGCTTTCCCTGACAT  300

seq1  AGTAGGAGCAGCTTGAGTGACCCATTGACCTGTCAGAGAAACTCCCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAGCAGCTTGAGTGACCCATTGACCTGTCAGAGAAACTCCCCTCT  350

seq1  CCTGAAAAGCCTCAGTAGCAGCTAGCTTACTCAGAGTACGAAGGGGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAGCCTCAGTAGCAGCTAGCTTACTCAGAGTACGAAGGGGGATA  400

seq1  AGGATGAAGGCCTGACCACAAACACCAGGACAGAAGCAGAGGCATTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAAGGCCTGACCACAAACACCAGGACAGAAGCAGAGGCATTGTGC  450

seq1  TGTGACTAATCCTGTACTTGATCTGAAATGTCCTTGATATAGTGACCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTAATCCTGTACTTGATCTGAAATGTCCTTGATATAGTGACCTCT  500

seq1  GAACAAAATAGTGGCTTCTTCAGCATTTTCCCAGCTGCCATCATGACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAATAGTGGCTTCTTCAGCATTTTCCCAGCTGCCATCATGACTTA  550

seq1  TTTTACAGAGCTCATGCAGATCTGGAGGCTCTGGTTTAACCATGATGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGAGCTCATGCAGATCTGGAGGCTCTGGTTTAACCATGATGCTT  600

seq1  GGAGCACACTCGTCCCAGCCTCAGAACCTCCTTAACTGGAATGGCTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACACTCGTCCCAGCCTCAGAACCTCCTTAACTGGAATGGCTGCCT  650

seq1  AAGAATACGTGCCTTCTGCTTTTACCTTGACATGGGAAACTCATGACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATACGTGCCTTCTGCTTTTACCTTGACATGGGAAACTCATGACAGC  700

seq1  CAGGGTATTTCCAAGAAAAACTTCAACAACTCCAAATATCTGTCACAAAA  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGGGTATTTCCAAGAAAAACTTCAACAACTCCAAATATCTGTCAC-AAA  749

seq1  ATTCTGGATAAATTTCAGATGGTCACACCTACAGATATTGGACCAGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGATAAATTTCAGATGGTCACACCTACAGATATTGGACCAGATGC  799

seq1  ACTAAAGTCTTTAACCATGCAGAGAAGGAGCACTTTAATAGTCCATGATA  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACTAAAGTCTTTAACCATGCAGAGAA-GAGCACTTTAATAGTCCATGATA  848

seq1  GCTGGGGCAGGTAGGTCCCATACCTTTACAGACAGGCAAGCCTAAGCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCAGGTAGGTCCCATACCTTTACAGACAGGCAAGCCTAAGCAGA  898

seq1  AACTATGGTTACCAAAAGGAAAGCCGTTTTGTAAGCAGTTCTCCTCTCTC  950
      |||||||| |||||||||||||||||  |||||||||| ||| |||||||
seq2  AACTATGG-TACCAAAAGGAAAGCCG--TTGTAAGCAG-TCT-CTCTCTC  943

seq1  TGTCCTTGGAGCAGTAGAAAAACCTTCCTTCCAGCTCATGACCCACTGCT  1000
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  TGTCCTTGGAGCAGTAGAAAA--CTTCCTTCCAGCTCATGACCCACTGCT  991

seq1  GCTGTAGTATTCTCCCAGTTTCATGCCATGCTTTATTAAATATTTTAATT  1050
      ||||||||| ||||||||||||||| |||||||   ||||||||   | |
seq2  GCTGTAGTA-TCTCCCAGTTTCATG-CATGCTT--ATAAATATT---AAT  1034

seq1  TGGCAACTGTTCTTTTATTAAAACAATAGAAAGTGCA--TCTTTTGAATT  1098
      |||| ||||||||||||||||||| |||| |||||||  ||||| |||| 
seq2  TGGC-ACTGTTCTTTTATTAAAACCATAG-AAGTGCATCTCTTTGGAATA  1082

seq1  AAATTATGGAAACAATGCAGGAGATAACACTGATATAATCAATGCTTTAG  1148
      ||||||||||||||||||||||||| |||| |  |||| | |||| ||||
seq2  AAATTATGGAAACAATGCAGGAGAT-ACACCGGAATAAAC-ATGC-TTAG  1129

seq1  TTTCTAATACC  1159
      ||||| |||||
seq2  TTTCT-ATACC  1139

seq1: chr14_93346278_93347365
seq2: B6Ng01-049D22.g_67_1140 (reverse)

seq1  GAGCCAGATTATTCTTAATGT-GAAGCATCCCAATAAACATGGGAATCAT  49
      ||||||||||||| || |||| |||||||||||||||||||||| |||| 
seq2  GAGCCAGATTATT-TTTATGTAGAAGCATCCCAATAAACATGGG-ATCA-  47

seq1  GTATTTATGTGAATGATAGGCAGACCATAGACATAAAATAGATAATATTT  99
      ||||||||||| ||||||||||| ||||||||||  | ||| || || ||
seq2  GTATTTATGTGGATGATAGGCAG-CCATAGACAT--ATTAG-TATTA-TT  92

seq1  ATTCTTCAAATATTTTAAATAGTGTGCCATTCAGATTTTTGTCTCTGAGT  149
      ||||||||||| |||||||||| ||| |||||||||||||||||||||||
seq2  ATTCTTCAAATTTTTTAAATAG-GTG-CATTCAGATTTTTGTCTCTGAGT  140

seq1  TGTATAGCAATTCCCTCCTAGATTAAAAAAATCCATCTTTGAGGAAATCT  199
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  TGTATAGCAATTCCCT-CTAGATT-AAAAAATCCATCTTTGAGGAAATCT  188

seq1  CAGTAAAGCACAATATATTCGGGGGGGGGGGAGGAGGTGATTGAAATCCG  249
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAGTAAAGCACAATAT-TTCGGGGGGGGGGGAGGAGGTGATTGAAATCCG  237

seq1  TTTTACTGCACATTCTATTTTATAGGGAAGCTGGTTAAGTTCGGGGAATA  299
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  TTTTACTGCACATTCTATTTTATAGGGAAGCTGGTTAAGTTCGGGGA--T  285

seq1  AACAGCTCAATAGCTTCCAGACATCCCTGAAGGTGACAGGATTCACTAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTCAATAGCTTCCAGACATCCCTGAAGGTGACAGGATTCACTAAG  335

seq1  ATCATCTCTCTCCAAGCATACATAATCAGTAAGAACTGTTGAAGAACACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTCTCTCCAAGCATACATAATCAGTAAGAACTGTTGAAGAACACT  385

seq1  CAGAGAAGCCAAGCTGCTGTCTGACAGATGCAGTGATCAGCTGATTTACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGCCAAGCTGCTGTCTGACAGATGCAGTGATCAGCTGATTTACC  435

seq1  TAGAAGAGGACCAGCCCCAGATAGCCAGATGATTGGACCAACTGAGCTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGGACCAGCCCCAGATAGCCAGATGATTGGACCAACTGAGCTAG  485

seq1  CTGGAAAAGCAGCTTGAACCTGTTGAGATGCTAACAAGTTGTACAGTGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAAGCAGCTTGAACCTGTTGAGATGCTAACAAGTTGTACAGTGTG  535

seq1  TTCCAGATGTCACCCATGTTGAAGTGGACTTTTGATGATGTATTTGTCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATGTCACCCATGTTGAAGTGGACTTTTGATGATGTATTTGTCTT  585

seq1  AAATGTTTCTGCATTTTCAAGTAACCCATCACCATGGATCCCACCTGCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTCTGCATTTTCAAGTAACCCATCACCATGGATCCCACCTGCCT  635

seq1  TACCTAGAAACAAACAAGAAAATATTCATACTAAGCCAGATGGTCTAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAGAAACAAACAAGAAAATATTCATACTAAGCCAGATGGTCTAGAG  685

seq1  TGAAAACAGATAAAAACTCAAATGCTACTCTGTGAAACTTTGTAAAACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAGATAAAAACTCAAATGCTACTCTGTGAAACTTTGTAAAACAT  735

seq1  TAAAGCCTGGACAGAAATTGATCAGGGGAATAAATGAAGTGGAGTTCAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCTGGACAGAAATTGATCAGGGGAATAAATGAAGTGGAGTTCAGG  785

seq1  AAGGTGAAATTAATCCTTTGTGCACAACTTTCTATAAAGAGAGGTGATCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAAATTAATCCTTTGTGCACAACTTTCTATAAAGAGAGGTGATCA  835

seq1  ATTCTTGTGGAATCTACCCCAGGTATTTTTTTGCAATCCCACCAACAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGTGGAATCTACCCCAGGTATTTTTTTGCAATCCCACCAACAATG  885

seq1  GAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTG  935

seq1  AATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTT  985

seq1  GTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAG  1035

seq1  GTGCTTCTCTGCCATTTGGTATTCCTCAGGTGAGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTCTGCCATTTGGTATTCCTCAGGTGAGAATTC  1074