BAC Information

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BAC

Clone NameB6Ng01-049K21
Chromosome14 (Build37)
Map Location 80,590,298 - 80,700,254
singlet/doubletdoublet
Overlap genenone
Upstream gene1300010F03Rik, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049K21.bB6Ng01-049K21.g
ACCDH873872DH873873
length1,056300
definitionDH873872|Mus musculus domesticus DNA, BAC clone: B6Ng01-049K21, 5' end.DH873873|Mus musculus domesticus DNA, BAC clone: B6Ng01-049K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,699,196 - 80,700,254)(80,590,298 - 80,590,597)
sequence
gaattccaaaagctaacaaacactgatttttgttagacataatccctatt
atgtatagaatggaatggaatctggcattctacaccatgcttagacttct
acctatgcttgcagaatatcagatgcgctcattcatgggaagttttgcta
caggttcagtgtgtctaaggagctcctgaaaattcaacatcaactacaaa
gcataatgcataaattagtccatggataaagagattgactattaaactca
agtgtggcctagactgagagtatagagaagaggtgcaaataagcacagaa
agaaaagacccaaaaggaaggagaacacaatacatttaacaccaatcctc
atgttatattcacccagaaattgtatgcttcttgatatgaatggtgagac
ctcatttttccctcatttgcagagatctaaatgaaatttgagcttcttaa
taagtggatgtttagctaacacctttccaagacaaataacctctcaagca
gactgtaaactatttccctcattagccacctccacatcatcacaatcgtc
atgccctccattaggagaaaagaaagctaagtttcttttgtttccaatgc
atcaatggcagcctgaagcagtgttgccttgtgctactctttgaaattat
cagcgctagttatggcaatcattttaagaaaagagcggcattgttcttaa
ttattgttcagtcttttgcccatgcgacatgacatagcataagtctttat
cagtaaccaccaccatccctgaaaagaaattatcagagtttaatagaact
ctttcagaagtgatgaaattgcttcttaaagacttagcatgctaaatggt
ttgctcaagatcatccaaacactgtgatccttgaaaaggcttagacttat
gattcctaggccacttttgaaaacattagccgaggtcctccatcactcct
gtcaggatttagcgtgcctgcttcagcttgtggggtgctttcttactggg
ggtcatggagctcagttccccgatatcattttttaggaacagaattgttt
aatggt
tacatttcttcatcactactcagctttctttattttctagttctttcatt
aatctacaaaataattgtcagaaatgaccatgtcttatgaataggtattt
ggttcatagctcagtattagaatgtccatactcagtaaatgctttgggat
caatccaaatgaggagcaaggagtggagatatagtttagggatggaaata
ctttttaaaaaaatgtatataacccccagcatctgcaaaaattacacaga
agaggaaacgagagaggttgtggggaagaaggaggagaaggtgaaggtgg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80699196_80700254
seq2: B6Ng01-049K21.b_45_1100 (reverse)

seq1  ACCATTTAAACAA-TCTGTT-CTTAAAAATGATATCGTGGAACTGAGCT-  47
      |||| |||||||| |||||| || ||||||||||||| ||||||||||| 
seq2  ACCA-TTAAACAATTCTGTTCCTAAAAAATGATATCGGGGAACTGAGCTC  49

seq1  CATGACACCCAGTAGGAAAGCACACCACAAAGCTGAAGGCAGGCACGCTA  97
      |||||| ||||||| |||||||| |||| |||||||| ||||||||||||
seq2  CATGACCCCCAGTAAGAAAGCACCCCAC-AAGCTGAA-GCAGGCACGCTA  97

seq1  AATCCTGACAGGAGTGATGGAGGACCTCGGCTAATGTTTTCAAAAGTGGC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGACAGGAGTGATGGAGGACCTCGGCTAATGTTTTCAAAAGTGGC  147

seq1  CTAGGAATCAATAAGTCTAAGCCTTTTCAAGGATCACAGTGTTTTGGATG  197
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  CTAGGAATC-ATAAGTCTAAGCCTTTTCAAGGATCACAGTG-TTTGGATG  195

seq1  ATCTTGAGCAAACCATTTAGCATGCTAAGTCTTTAAGAAGCAATTTCATC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAGCAAACCATTTAGCATGCTAAGTCTTTAAGAAGCAATTTCATC  245

seq1  ACTTCTGAAAGAGTTCTATTAAACTCTGATAATTTCTTTTTCAGGGATGG  297
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTTCTGAAAGAGTTCTATTAAACTCTGATAATTTC-TTTTCAGGGATGG  294

seq1  TGGTGGTTACTGATAAAGACTTATGCTATGTCATGTCGCATGGGCAAAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTTACTGATAAAGACTTATGCTATGTCATGTCGCATGGGCAAAAG  344

seq1  ACTGAACAATAATTAAGAACAATGCCGCTCTTTTCTTAAAATGATTGCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACAATAATTAAGAACAATGCCGCTCTTTTCTTAAAATGATTGCCA  394

seq1  TAACTAGCGCTGATAATTTCAAAGAGTAGCACAAGGCAACACTGCTTCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGCGCTGATAATTTCAAAGAGTAGCACAAGGCAACACTGCTTCAG  444

seq1  GCTGCCATTGATGCATTGGAAACAAAAGAAACTTAGCTTTCTTTTCTCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATTGATGCATTGGAAACAAAAGAAACTTAGCTTTCTTTTCTCCT  494

seq1  AATGGAGGGCATGACGATTGTGATGATGTGGAGGTGGCTAATGAGGGAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGGCATGACGATTGTGATGATGTGGAGGTGGCTAATGAGGGAAA  544

seq1  TAGTTTACAGTCTGCTTGAGAGGTTATTTGTCTTGGAAAGGTGTTAGCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTACAGTCTGCTTGAGAGGTTATTTGTCTTGGAAAGGTGTTAGCTA  594

seq1  AACATCCACTTATTAAGAAGCTCAAATTTCATTTAGATCTCTGCAAATGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCACTTATTAAGAAGCTCAAATTTCATTTAGATCTCTGCAAATGA  644

seq1  GGGAAAAATGAGGTCTCACCATTCATATCAAGAAGCATACAATTTCTGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAATGAGGTCTCACCATTCATATCAAGAAGCATACAATTTCTGGG  694

seq1  TGAATATAACATGAGGATTGGTGTTAAATGTATTGTGTTCTCCTTCCTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATAACATGAGGATTGGTGTTAAATGTATTGTGTTCTCCTTCCTTT  744

seq1  TGGGTCTTTTCTTTCTGTGCTTATTTGCACCTCTTCTCTATACTCTCAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTTTTCTTTCTGTGCTTATTTGCACCTCTTCTCTATACTCTCAGT  794

seq1  CTAGGCCACACTTGAGTTTAATAGTCAATCTCTTTATCCATGGACTAATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCACACTTGAGTTTAATAGTCAATCTCTTTATCCATGGACTAATT  844

seq1  TATGCATTATGCTTTGTAGTTGATGTTGAATTTTCAGGAGCTCCTTAGAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATTATGCTTTGTAGTTGATGTTGAATTTTCAGGAGCTCCTTAGAC  894

seq1  ACACTGAACCTGTAGCAAAACTTCCCATGAATGAGCGCATCTGATATTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAACCTGTAGCAAAACTTCCCATGAATGAGCGCATCTGATATTCT  944

seq1  GCAAGCATAGGTAGAAGTCTAAGCATGGTGTAGAATGCCAGATTCCATTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATAGGTAGAAGTCTAAGCATGGTGTAGAATGCCAGATTCCATTC  994

seq1  CATTCTATACATAATAGGGATTATGTCTAACAAAAATCAGTGTTTGTTAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTATACATAATAGGGATTATGTCTAACAAAAATCAGTGTTTGTTAG  1044

seq1  CTTTTGGAATTC  1059
      ||||||||||||
seq2  CTTTTGGAATTC  1056

seq1: chr14_80590298_80590597
seq2: B6Ng01-049K21.g_74_373

seq1  TACATTTCTTCATCACTACTCAGCTTTCTTTATTTTCTAGTTCTTTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCTTCATCACTACTCAGCTTTCTTTATTTTCTAGTTCTTTCATT  50

seq1  AATCTACAAAATAATTGTCAGAAATGACCATGTCTTATGAATAGGTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACAAAATAATTGTCAGAAATGACCATGTCTTATGAATAGGTATTT  100

seq1  GGTTCATAGCTCAGTATTAGAATGTCCATACTCAGTAAATGCTTTGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATAGCTCAGTATTAGAATGTCCATACTCAGTAAATGCTTTGGGAT  150

seq1  CAATCCAAATGAGGAGCAAGGAGTGGAGATATAGTTTAGGGATGGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAAATGAGGAGCAAGGAGTGGAGATATAGTTTAGGGATGGAAATA  200

seq1  CTTTTTAAAAAAATGTATATAACCCCCAGCATCTGCAAAAATTACACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAAAAATGTATATAACCCCCAGCATCTGCAAAAATTACACAGA  250

seq1  AGAGGAAACGAGAGAGGTTGTGGGGAAGAAGGAGGAGAAGGTGAAGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAACGAGAGAGGTTGTGGGGAAGAAGGAGGAGAAGGTGAAGGTGG  300